Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006492.1

Orthogroup ID

OG0007418

Physical Location & Seq

Genomic Coordinates Forward (+)

144332 .. 144951

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006492.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggcggccaagcttccattggttctcttcctctcctccctcttcatccatgcagctctagctgcttttgtatgtgaggatttgccaaatgatgtttgcgcattttcggtgtcatctgccgggaaaagatgtttaatcgagacaatggcaaagaacgatggaagcgtagagtaccagtgcaggacatcagagattgtggttgagggtttggccgagtacatggagacagatgagtgtgtgaatgcttgcggtgttgatagaaagtccgtcggaatttcctccgatgcccttcttgagcctcagtttatggggaagctttgctctcccaactgttaccagaagtgccccaacattgttgaactttacttcaacttggctgccggagagggtaagttacctaattcacaacaaattaaatataaaacattcccatccttaggacccaaactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAR1

Protein Analysis

150

Amino Acids

16.27

Weight (kDa)

4.99

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54040 AT3G54040
fragaria_vesca	FvH4_6g12390 FvH4_6g12390
malus_domestica	MD04G1143000.v1.1 MD04G1143100.v1.1 MD12G1157300.v1.1
prunus_persica	Prupe.6G267800_v2.0.a1
pyrus_communis	pycom12g14960
rosa_chinensis	RchiOBHm_Chr3g0464221 RchiOBHm_Chr3g0464231
rosa_laevigata	RLG00000024715
rosa_multiflora	Rmu_sc0006492.1_g000025 Rmu_sc0007811.1_g000010 Rmu_sc0007811.1_g000011
rosa_roxburghii	Rroxscaffold_6G00415930
rosa_rugosa	Rorug03G0070900 Rorug06G0012300
rosa_samantha	Rh3BG132600 Rh3BG132700 Rh3CG134900 Rh3CG135000 Rh3DG134000 Rh3DG134100
rosa_wichuraiana	Rw3G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	100
AciI	CCGC	2 cut(s)	5, 249
AcoI	YGGCCR	2 cut(s)	6, 210
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	2 cut(s)	173, 218
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	359, 370
AluBI	AGCT	4 cut(s)	13, 56, 62, 316
AluI	AGCT	4 cut(s)	13, 56, 62, 316
Alw26I	GTCTC	2 cut(s)	134, 218
AoxI	GGCC	2 cut(s)	6, 210
ApeKI	GCWGC	3 cut(s)	53, 62, 377
ApoI	RAATTY	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	440
AxyI	CCTNAGG	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	49, 65, 364
BccI	CCATC	2 cut(s)	152, 439
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	134, 218
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	4 cut(s)	6, 54, 63, 378
BlsI	GCNGC	4 cut(s)	7, 55, 64, 379
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	1 cut(s)	175
Bse21I	CCTNAGG	1 cut(s)	436
BseGI	GGATG	2 cut(s)	45, 431
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	347
BseXI	GCAGC	3 cut(s)	49, 65, 364
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	8, 212
BsiSI	CCGG	2 cut(s)	120, 381
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	2 cut(s)	134, 218
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	8, 212
Bsp1286I	GDGCHC	1 cut(s)	347
BspACI	CCGC	2 cut(s)	5, 249
BspANI	GGCC	2 cut(s)	8, 212
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	32, 47
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	300, 436
BstF5I	GGATG	2 cut(s)	45, 431
BstHHI	GCGC	1 cut(s)	101
BstMAI	GTCTC	2 cut(s)	134, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 62
BstSCI	CCNGG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	347
BstV1I	GCAGC	3 cut(s)	49, 65, 364
Bsu36I	CCTNAGG	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	8, 212
BtsCI	GGATG	2 cut(s)	45, 431
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	172, 217
CviAII	CATG	2 cut(s)	50, 220
CviJI	RGCY	8 cut(s)	8, 13, 56, 62, 212, 298, 316, 377
CviKI_1	RGCY	8 cut(s)	8, 13, 56, 62, 212, 298, 316, 377
CviQI	GTAC	2 cut(s)	172, 217
DdeI	CTNAG	2 cut(s)	300, 436
EaeI	YGGCCR	2 cut(s)	6, 210
Eam1104I	CTCTTC	2 cut(s)	32, 47
EarI	CTCTTC	2 cut(s)	32, 47
Eco47I	GGWCC	1 cut(s)	440
Eco81I	CCTNAGG	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	440
FaeI	CATG	2 cut(s)	53, 223
FaiI	YATR	5 cut(s)	51, 73, 221, 308, 420
FatI	CATG	2 cut(s)	49, 219
Fnu4HI	GCNGC	4 cut(s)	6, 54, 63, 378
FokI	GGATG	2 cut(s)	32, 418
Fsp4HI	GCNGC	4 cut(s)	6, 54, 63, 378
FspBI	CTAG	1 cut(s)	59
FspI	TGCGCA	1 cut(s)	100
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	4 cut(s)	6, 54, 63, 378
HaeIII	GGCC	2 cut(s)	8, 212
HapII	CCGG	2 cut(s)	120, 381
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	53, 223
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HindIII	AAGCTT	2 cut(s)	11, 314
HpaII	CCGG	2 cut(s)	120, 381
Hpy188I	TCNGA	3 cut(s)	190, 272, 283
Hpy188III	TCNNGA	2 cut(s)	139, 293
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	2 cut(s)	53, 180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 62
HpyF3I	CTNAG	2 cut(s)	300, 436
Hsp92II	CATG	2 cut(s)	53, 223
HspAI	GCGC	1 cut(s)	99
LpnPI	CCDG	5 cut(s)	133, 166, 188, 350, 394
Lsp1109I	GCAGC	3 cut(s)	49, 65, 364
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	332, 393
MboII	GAAGA	2 cut(s)	19, 34
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	3 cut(s)	273, 400, 411
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	8 cut(s)	41, 46, 50, 70, 196, 289, 309, 379
MseI	TTAA	2 cut(s)	134, 414
MspI	CCGG	2 cut(s)	120, 381
MspR9I	CCNGG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	59, 62
NciI	CCSGG	1 cut(s)	121
NlaIII	CATG	2 cut(s)	53, 223
NlaIV	GGNNCC	1 cut(s)	442
NmeAIII	GCCGAG	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	7, 55, 64, 379
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	440
PspPPI	RGGWCCY	1 cut(s)	440
RsaI	GTAC	2 cut(s)	173, 218
RsaNI	GTAC	2 cut(s)	172, 217
SaqAI	TTAA	2 cut(s)	134, 414
SatI	GCNGC	4 cut(s)	6, 54, 63, 378
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	5 cut(s)	15, 58, 64, 318, 400
SfaNI	GCATC	1 cut(s)	274
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	273, 400, 411
SsiI	CCGC	2 cut(s)	5, 249
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	273, 400, 411
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	134, 414
Tru9I	TTAA	2 cut(s)	134, 414
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	3 cut(s)	53, 62, 377
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.