RLG00000024715

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0007418
Physical Location & Seq
Reverse (-)
38509983 .. 38510999
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024715

Sequence Viewer

Length: 555 bp
ATGGCGGCCAAGCTTCCATTGGTTCTCTTCCTCTCCTCCCTCTTCATCCATGCAGCTCTAGCTGCTTTTGTATGTGAGGATTTGCCAAATGATGTTTGCGCCTTTTCGGTGTCATCCGCCGGGAAAAGATGTTTAATCGAGACAATGGCAAAGAACGATGGTAGCGTAGAGTACCAGTGCAAGACATCAGAGGTTGTGGTTGAGGGTTTGGCCGAGTACATGGAGACAGATGAGTGTGTGAATGCTTGCGGTGTTGATAGAAAGTCCGTCGGAATTTCCTCCGATGCCCTTCTTGAGCCTCAGTTTATGGGCAAGCTTTGCTCTCCCAACTGTTACCAGAAGTGCCCCAACATTGTTGAACTTTACTTCAACTTGGCTGCCGGAGAGGGAGTGTTCTTGCCTGATCTGTGTGAGAGACAACGATCCAACCCTCGCCGTGCCATGATTGAACTGATGAGCTCCGGCGAAGCAGCCCCTGGTCCTATTTCATCAGAAGACATACATGCCGCCCCTGGCCCCGCTTCTTCCCCTGTTCCTTCTCCTGCTCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

185

Amino Acids

19.58

Weight (kDa)

4.6

Isoelectric Point (pI)

64.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 24 - 177 1.2e-73 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 5, 117, 249, 507, 519
AclWI GGATC 1 cut(s) 417
AcoI YGGCCR 2 cut(s) 6, 210
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 2 cut(s) 173, 218
AgsI TTSAA 3 cut(s) 359, 370, 449
AjnI CCWGG 2 cut(s) 475, 511
AluBI AGCT 5 cut(s) 13, 56, 62, 316, 459
AluI AGCT 5 cut(s) 13, 56, 62, 316, 459
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 3 cut(s) 134, 218, 409
AlwI GGATC 1 cut(s) 417
AlwNI CAGNNNCTG 1 cut(s) 476
AoxI GGCC 3 cut(s) 6, 210, 514
ApeKI GCWGC 4 cut(s) 53, 62, 377, 470
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 479, 515
AsuC2I CCSGG 1 cut(s) 121
AvaII GGWCC 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 4 cut(s) 49, 65, 364, 482
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 2 cut(s) 477, 513
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 3 cut(s) 134, 218, 409
BfaI CTAG 1 cut(s) 59
BisI GCNGC 6 cut(s) 6, 54, 63, 378, 471, 507
BlsI GCNGC 6 cut(s) 7, 55, 64, 379, 472, 508
Bme1390I CCNGG 3 cut(s) 121, 477, 513
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 479, 515
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 3 cut(s) 121, 477, 513
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 475, 511
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bse1I ACTGG 1 cut(s) 175
BseBI CCWGG 2 cut(s) 477, 513
BseDI CCNNGG 2 cut(s) 475, 511
BseGI GGATG 2 cut(s) 45, 113
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 347
BseXI GCAGC 4 cut(s) 49, 65, 364, 482
BshFI GGCC 3 cut(s) 8, 212, 516
BsiHKAI GWGCWC 1 cut(s) 461
BsiSI CCGG 3 cut(s) 120, 381, 462
BsmAI GTCTC 3 cut(s) 134, 218, 409
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 3 cut(s) 8, 212, 516
Bsp1286I GDGCHC 2 cut(s) 347, 461
Bsp143I GATC 2 cut(s) 403, 422
BspACI CCGC 5 cut(s) 5, 117, 249, 507, 519
BspANI GGCC 3 cut(s) 8, 212, 516
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 1 cut(s) 417
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 475, 511
BssMI GATC 2 cut(s) 403, 422
Bst2UI CCWGG 2 cut(s) 477, 513
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 2 cut(s) 32, 47
BstAPI GCANNNNNTGC 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 247, 314
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 45, 113
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 406, 425
BstMAI GTCTC 3 cut(s) 134, 218, 409
BstMBI GATC 2 cut(s) 403, 422
BstMWI GCNNNNNNNGC 3 cut(s) 59, 62, 318
BstNI CCWGG 2 cut(s) 477, 513
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 3 cut(s) 119, 475, 511
BstSLI GKGCMC 1 cut(s) 347
BstV1I GCAGC 4 cut(s) 49, 65, 364, 482
BstV2I GAAGAC 1 cut(s) 501
BsuRI GGCC 3 cut(s) 8, 212, 516
BtsCI GGATG 2 cut(s) 45, 113
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 247, 314
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 479, 515
Csp6I GTAC 2 cut(s) 172, 217
CviAII CATG 4 cut(s) 50, 220, 442, 503
CviQI GTAC 2 cut(s) 172, 217
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 405, 424
DpnII GATC 2 cut(s) 403, 422
EaeI YGGCCR 2 cut(s) 6, 210
Eam1104I CTCTTC 2 cut(s) 32, 47
EarI CTCTTC 2 cut(s) 32, 47
EciI GGCGGA 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 459
EcoICRI GAGCTC 1 cut(s) 459
EcoRII CCWGG 2 cut(s) 475, 511
EcoT38I GRGCYC 1 cut(s) 461
FaeI CATG 4 cut(s) 53, 223, 445, 506
FaiI YATR 7 cut(s) 51, 73, 221, 308, 443, 500, 504
FatI CATG 4 cut(s) 49, 219, 441, 502
FauI CCCGC 1 cut(s) 526
Fnu4HI GCNGC 6 cut(s) 6, 54, 63, 378, 471, 507
FokI GGATG 2 cut(s) 32, 100
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 6 cut(s) 6, 54, 63, 378, 471, 507
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 100
GluI GCNGC 6 cut(s) 6, 54, 63, 378, 471, 507
HaeIII GGCC 3 cut(s) 8, 212, 516
HapII CCGG 3 cut(s) 120, 381, 462
HhaI GCGC 1 cut(s) 101
Hin1II CATG 4 cut(s) 53, 223, 445, 506
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HindIII AAGCTT 2 cut(s) 11, 314
HpaII CCGG 3 cut(s) 120, 381, 462
Hpy188I TCNGA 4 cut(s) 190, 272, 283, 493
Hpy188III TCNNGA 2 cut(s) 139, 293
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 299, 546
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 53, 180
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 62, 318
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 4 cut(s) 53, 223, 445, 506
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 403, 422
LmnI GCTCC 2 cut(s) 464, 550
Lsp1109I GCAGC 4 cut(s) 49, 65, 364, 482
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 332
MalI GATC 2 cut(s) 405, 424
MboI GATC 2 cut(s) 403, 422
MboII GAAGA 4 cut(s) 19, 34, 506, 516
MhlI GDGCHC 2 cut(s) 347, 461
MluCI AATT 1 cut(s) 273
MmeI TCCRAC 2 cut(s) 250, 450
MseI TTAA 1 cut(s) 134
MspI CCGG 3 cut(s) 120, 381, 462
MspR9I CCNGG 3 cut(s) 121, 477, 513
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 2 cut(s) 477, 513
MwoI GCNNNNNNNGC 3 cut(s) 59, 62, 318
NciI CCSGG 1 cut(s) 121
NdeII GATC 2 cut(s) 403, 422
NlaIII CATG 4 cut(s) 53, 223, 445, 506
NlaIV GGNNCC 1 cut(s) 517
NmeAIII GCCGAG 1 cut(s) 238
NspI RCATGY 1 cut(s) 506
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 1 cut(s) 247
PkrI GCNGC 6 cut(s) 7, 55, 64, 379, 472, 508
Psp124BI GAGCTC 1 cut(s) 461
Psp6I CCWGG 2 cut(s) 475, 511
PspGI CCWGG 2 cut(s) 475, 511
PspN4I GGNNCC 1 cut(s) 517
PspPI GGNCC 2 cut(s) 479, 515
PstNI CAGNNNCTG 1 cut(s) 476
RsaI GTAC 2 cut(s) 173, 218
RsaNI GTAC 2 cut(s) 172, 217
SacI GAGCTC 1 cut(s) 461
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 6 cut(s) 6, 54, 63, 378, 471, 507
Sau3AI GATC 2 cut(s) 403, 422
Sau96I GGNCC 2 cut(s) 479, 515
ScrFI CCNGG 3 cut(s) 121, 477, 513
SduI GDGCHC 2 cut(s) 347, 461
SetI ASST 6 cut(s) 15, 58, 64, 195, 318, 461
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 273
SsiI CCGC 5 cut(s) 5, 117, 249, 507, 519
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 1 cut(s) 461
StyD4I CCNGG 3 cut(s) 119, 475, 511
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 273
TatI WGTACW 1 cut(s) 216
TauI GCSGC 2 cut(s) 8, 509
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 182
TseI GCWGC 4 cut(s) 53, 62, 377, 470
TspDTI ATGAA 2 cut(s) 34, 477
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 273
XceI RCATGY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.