Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008034

Physical Location & Seq

Genomic Coordinates Forward (+)

20114488 .. 20118745

Gene Structure 4258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAAGAAGCGCTTAACCACTTCCACTTGTTCTTCTTCTCCATCTTCCTCTGTTTCTTCTTCTACTACTACTTCCTCTCCTATTCAGTCGGAGGCTCCAAGGCCTAAACGAGCCAAAAGGGCTAAGAAATCTTCTCCTTCTGGTGATAAATCTCATAACCCGACAAGCCCTGCTTCTACCCGACGCAGCTCTATCTACAGAGGAGTCACTAGACATAGATGGACTGGGAGATTCGAGGCTCATCTTTGGGACAAAAGCTCTTGGAATTCGATTCAGAACAAGAAAGGCAAACAAGTTTATCTGGGAGCATATGACAGTGAAGAAGCAGCAGCACATACGTACGATCTGGCTGCTCTCAAGTACTGGGGACCCGACACCATCTTGAATTTTCCGGCAGAGACGTACACAAAGGAATTGGAAGAAATGCAGAGAGTGACAAAGGAAGAATATTTGGCTTCTCTCCGCCGCCAGAGCAGTGGTTTCTCCAGAGGCGTCTCTAAATATCGCGGCGTCGCTAGGCATCACCACAACGGAAGATGGGAGGCTCGGATCGGAAGAGTGTTTGGGAACAAGTACTTGTACCTCGGCACCTATAATACGCAGGAGGAAGCTGCTGCAGCATATGACATGGCTGCGATTGAGTATCGAGGCGCAAACGCGGTTACTAATTTCGACATTAGTAATTACATTGACCGGTTAAAGAAGAAAGGTGTTTTCCCGTTCCCTGTGAACCAAGCTAACCATCAAGAGGGTATTCTTGTTGAAGCCAAACAAGAAGTTGAAACGAGAGAAGCGAAGGAAGAGCCTAGAGAAGAAGTGAAACAACAGTACGTGGAAGAACCACCGCAAGAAGAAGAAGAGAAGGAAGAAGAGAAAGCAGAGCAACAAGAAGCAGAGATTGTAGGATATTCAGAAGAAGCAGCAGTGGTCAATTGCTGCATAGACTCTTCAACCATAATGGAAATGGATCGTTGTGGGGACAACAATGAGCTGGCTTGGAACTTCTGTATGATGGATACAGGGTTTTCTCCGTTTTTGACTGATCAGAATCTCGCGAATGAGAATCCCATAGAGTATCCGGAGCTATTCAATGAGTTAGCATTTGAGGACAACATCGACTTCATGTTCGATGATGGGAAGCACGAGTGCTTGAACTTGGAAAATCTGGATTGTTGCGTGGTGGGAAGAGAGAGCCCACCCTCTTCTTCTTCACCATTGTCTTGCTTATCTACTGACTCTGCTTCATCAACAACAACAACAACAACCTCGGTTTCTTGTAACTATTTGTTTCAGGGCTTGTTCGTTGGTTCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

438

Amino Acids

49.3

Weight (kDa)

5.17

Isoelectric Point (pI)

65.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	25 - 76	1.2e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320
fragaria_vesca	FvH4_7g04950 FvH4_7g04950 FvH4_7g04950
malus_domestica	MD02G1265300.v1.1 MD07G1054100.v1.1
prunus_persica	Prupe.2G060200_v2.0.a1
pyrus_communis	pycom02g22670 pycom07g04190
rosa_chinensis	RchiOBHm_Chr1g0331141
rosa_laevigata	RLG00000029750
rosa_multiflora	Rmu_sc0006123.1_g000003
rosa_roxburghii	Rroxscaffold_4G00319410
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400
rosa_wichuraiana	Rw1G009290 Rw3G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	587
AccII	CGCG	3 cut(s)	507, 659, 1055
AccIII	TCCGGA	1 cut(s)	1078
AciI	CCGC	5 cut(s)	463, 466, 507, 659, 845
AclWI	GGATC	2 cut(s)	557, 975
AcsI	RAATTY	2 cut(s)	265, 385
AcyI	GRCGYC	2 cut(s)	492, 510
AfaI	GTAC	6 cut(s)	341, 362, 404, 575, 581, 830
AfeI	AGCGCT	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	748
AgeI	ACCGGT	1 cut(s)	693
AgsI	TTSAA	6 cut(s)	385, 764, 782, 951, 1090, 1153
AluBI	AGCT	6 cut(s)	189, 258, 611, 737, 991, 1084
AluI	AGCT	6 cut(s)	189, 258, 611, 737, 991, 1084
Alw26I	GTCTC	2 cut(s)	392, 499
AlwI	GGATC	2 cut(s)	557, 975
Aor13HI	TCCGGA	1 cut(s)	1078
Aor51HI	AGCGCT	1 cut(s)	11
AoxI	GGCC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	265, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	1109, 1141
AsiGI	ACCGGT	1 cut(s)	693
AspLEI	GCGC	2 cut(s)	12, 653
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	155, 515, 1203
AvaII	GGWCC	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	1196
BauI	CACGAG	1 cut(s)	1142
BccI	CCATC	7 cut(s)	49, 213, 386, 531, 750, 1006, 1127
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciVI	GTATCC	2 cut(s)	1009, 1086
BclI	TGATCA	1 cut(s)	1042
BcoDI	GTCTC	2 cut(s)	392, 499
BfaI	CTAG	3 cut(s)	210, 516, 807
BfmI	CTRYAG	2 cut(s)	196, 615
BfoI	RGCGCY	1 cut(s)	13
BfuI	GTATCC	2 cut(s)	1009, 1086
BglI	GCCNNNNNGGC	1 cut(s)	119
BmcAI	AGTACT	2 cut(s)	362, 575
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	4 cut(s)	96, 369, 370, 589
BmrI	ACTGGG	2 cut(s)	234, 373
BmsI	GCATC	1 cut(s)	529
BmuI	ACTGGG	2 cut(s)	234, 373
BpmI	CTGGAG	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	341
BsaAI	YACGTR	2 cut(s)	339, 832
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaHI	GRCGYC	2 cut(s)	492, 510
BsaJI	CCNNGG	3 cut(s)	98, 583, 1266
BsaWI	WCCGGW	2 cut(s)	693, 1078
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	748
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	2 cut(s)	229, 368
Bse8I	GATNNNNATC	1 cut(s)	1047
BseAI	TCCGGA	1 cut(s)	1078
BseDI	CCNNGG	3 cut(s)	98, 583, 1266
BseJI	GATNNNNATC	1 cut(s)	1047
BseLI	CCNNNNNNNGG	1 cut(s)	748
BseNI	ACTGG	2 cut(s)	229, 368
BseRI	GAGGAG	1 cut(s)	216
Bsh1236I	CGCG	3 cut(s)	507, 659, 1055
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	587
BshTI	ACCGGT	1 cut(s)	693
BsiSI	CCGG	3 cut(s)	392, 694, 1079
BsiWI	CGTACG	1 cut(s)	339
BslFI	GGGAC	3 cut(s)	263, 381, 992
BslI	CCNNNNNNNGG	1 cut(s)	748
BsmAI	GTCTC	2 cut(s)	392, 499
BsmBI	CGTCTC	2 cut(s)	392, 499
BsmFI	GGGAC	3 cut(s)	263, 381, 992
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	1196
Bsp13I	TCCGGA	1 cut(s)	1078
Bsp143I	GATC	4 cut(s)	343, 549, 967, 1042
Bsp68I	TCGCGA	1 cut(s)	1055
BspACI	CCGC	5 cut(s)	463, 466, 507, 659, 845
BspANI	GGCC	1 cut(s)	103
BspEI	TCCGGA	1 cut(s)	1078
BspFNI	CGCG	3 cut(s)	507, 659, 1055
BspLI	GGNNCC	4 cut(s)	96, 369, 370, 589
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	2 cut(s)	557, 975
BspQI	GCTCTTC	1 cut(s)	795
BspT107I	GGYRCC	1 cut(s)	587
BsrFI	RCCGGY	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	229, 368
BssAI	RCCGGY	1 cut(s)	693
BssECI	CCNNGG	3 cut(s)	98, 583, 1266
BssMI	GATC	4 cut(s)	343, 549, 967, 1042
BssNI	GRCGYC	2 cut(s)	492, 510
BssSI	CACGAG	1 cut(s)	1142
BssT1I	CCWWGG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	1142
Bst4CI	ACNGT	2 cut(s)	317, 828
Bst6I	CTCTTC	7 cut(s)	550, 795, 852, 864, 952, 1180, 1207
BstACI	GRCGYC	2 cut(s)	492, 510
BstBAI	YACGTR	2 cut(s)	339, 832
BstC8I	GCNNGC	1 cut(s)	993
BstDEI	CTNAG	1 cut(s)	123
BstFNI	CGCG	3 cut(s)	507, 659, 1055
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	12, 653
BstKTI	GATC	4 cut(s)	346, 552, 970, 1045
BstMAI	GTCTC	2 cut(s)	392, 499
BstMBI	GATC	4 cut(s)	343, 549, 967, 1042
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 471, 617
BstSFI	CTRYAG	2 cut(s)	196, 615
BstSNI	TACGTA	1 cut(s)	339
BstUI	CGCG	3 cut(s)	507, 659, 1055
BstXI	CCANNNNNNTGG	1 cut(s)	476
BsuI	GTATCC	2 cut(s)	1009, 1086
BsuRI	GGCC	1 cut(s)	103
BtsI	GCAGTG	2 cut(s)	481, 930
BtsIMutI	CAGTG	3 cut(s)	322, 481, 930
BtuMI	TCGCGA	1 cut(s)	1055
Cac8I	GCNNGC	1 cut(s)	993
CfoI	GCGC	2 cut(s)	12, 653
Cfr10I	RCCGGY	1 cut(s)	693
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	3 cut(s)	192, 481, 499
Csp6I	GTAC	6 cut(s)	340, 361, 403, 574, 580, 829
CspAI	ACCGGT	1 cut(s)	693
CviAII	CATG	2 cut(s)	628, 1123
CviQI	GTAC	6 cut(s)	340, 361, 403, 574, 580, 829
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	4 cut(s)	345, 551, 969, 1044
DpnII	GATC	4 cut(s)	343, 549, 967, 1042
Eam1104I	CTCTTC	7 cut(s)	550, 795, 852, 864, 952, 1180, 1207
EarI	CTCTTC	7 cut(s)	550, 795, 852, 864, 952, 1180, 1207
EciI	GGCGGA	1 cut(s)	452
Eco105I	TACGTA	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	1196
Eco47I	GGWCC	1 cut(s)	368
Eco47III	AGCGCT	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	1196
ErhI	CCWWGG	1 cut(s)	98
Esp3I	CGTCTC	2 cut(s)	392, 499
FaeI	CATG	2 cut(s)	631, 1126
FalI	AAGNNNNNCTT	3 cut(s)	28, 157, 189
FaqI	GGGAC	3 cut(s)	263, 381, 992
FatI	CATG	2 cut(s)	627, 1122
FauNDI	CATATG	2 cut(s)	310, 622
FbaI	TGATCA	1 cut(s)	1042
FriOI	GRGCYC	1 cut(s)	1196
FspBI	CTAG	3 cut(s)	210, 516, 807
GlaI	GCGC	2 cut(s)	11, 652
GsuI	CTGGAG	1 cut(s)	469
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	3 cut(s)	392, 694, 1079
HgaI	GACGC	3 cut(s)	192, 481, 499
HhaI	GCGC	2 cut(s)	12, 653
Hin1I	GRCGYC	2 cut(s)	492, 510
Hin1II	CATG	2 cut(s)	631, 1126
Hin6I	GCGC	2 cut(s)	10, 651
HinP1I	GCGC	2 cut(s)	10, 651
HinfI	GANTC	7 cut(s)	204, 231, 271, 944, 1048, 1063, 1235
HpaII	CCGG	3 cut(s)	392, 694, 1079
HphI	GGTGA	3 cut(s)	155, 515, 1203
Hpy166II	GTNNAC	2 cut(s)	405, 730
Hpy188I	TCNGA	7 cut(s)	91, 276, 549, 554, 913, 1047, 1312
Hpy188III	TCNNGA	6 cut(s)	382, 486, 746, 1054, 1079, 1166
Hpy8I	GTNNAC	2 cut(s)	405, 730
Hpy99I	CGWCG	2 cut(s)	186, 515
HpyAV	CCTTC	3 cut(s)	147, 790, 856
HpyCH4III	ACNGT	2 cut(s)	317, 828
HpyCH4IV	ACGT	3 cut(s)	338, 401, 831
HpyCH4V	TGCA	3 cut(s)	427, 617, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 471, 617
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	3 cut(s)	338, 401, 831
Hsp92I	GRCGYC	2 cut(s)	492, 510
Hsp92II	CATG	2 cut(s)	631, 1126
HspAI	GCGC	2 cut(s)	10, 651
KflI	GGGWCCC	1 cut(s)	368
Kpn2I	TCCGGA	1 cut(s)	1078
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	4 cut(s)	343, 549, 967, 1042
LguI	GCTCTTC	1 cut(s)	795
LmnI	GCTCC	3 cut(s)	100, 305, 1081
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	3 cut(s)	210, 516, 807
MaeII	ACGT	3 cut(s)	338, 401, 831
MaeIII	GTNAC	4 cut(s)	205, 433, 661, 1277
MalI	GATC	4 cut(s)	345, 551, 969, 1044
MboI	GATC	4 cut(s)	343, 549, 967, 1042
MfeI	CAATTG	1 cut(s)	931
MhlI	GDGCHC	1 cut(s)	1196
MluCI	AATT	6 cut(s)	265, 385, 413, 667, 682, 931
MlyI	GAGTC	3 cut(s)	213, 938, 1229
MmeI	TCCRAC	1 cut(s)	69
MroI	TCCGGA	1 cut(s)	1078
MseI	TTAA	2 cut(s)	14, 698
MspI	CCGG	3 cut(s)	392, 694, 1079
MunI	CAATTG	1 cut(s)	931
MvnI	CGCG	3 cut(s)	507, 659, 1055
MwoI	GCNNNNNNNGC	3 cut(s)	119, 471, 617
NdeI	CATATG	2 cut(s)	310, 622
NdeII	GATC	4 cut(s)	343, 549, 967, 1042
NlaIII	CATG	2 cut(s)	631, 1126
NlaIV	GGNNCC	4 cut(s)	96, 369, 370, 589
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	2 cut(s)	205, 433
NruI	TCGCGA	1 cut(s)	1055
PceI	AGGCCT	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	795
PcsI	WCGNNNNNNNCGW	1 cut(s)	791
PfeI	GAWTC	4 cut(s)	231, 271, 1048, 1063
Pfl23II	CGTACG	1 cut(s)	339
PinAI	ACCGGT	1 cut(s)	693
PleI	GAGTC	3 cut(s)	212, 938, 1229
PpsI	GAGTC	3 cut(s)	212, 938, 1229
Ppu21I	YACGTR	2 cut(s)	339, 832
PpuMI	RGGWCCY	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	368
PspLI	CGTACG	1 cut(s)	339
PspN4I	GGNNCC	4 cut(s)	96, 369, 370, 589
PspPI	GGNCC	1 cut(s)	368
PspPPI	RGGWCCY	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	619
RruI	TCGCGA	1 cut(s)	1055
RsaI	GTAC	6 cut(s)	341, 362, 404, 575, 581, 830
RsaNI	GTAC	6 cut(s)	340, 361, 403, 574, 580, 829
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	2 cut(s)	14, 698
Sau3AI	GATC	4 cut(s)	343, 549, 967, 1042
Sau96I	GGNCC	1 cut(s)	368
ScaI	AGTACT	2 cut(s)	362, 575
SchI	GAGTC	3 cut(s)	213, 938, 1229
SduI	GDGCHC	1 cut(s)	1196
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	2 cut(s)	196, 615
SinI	GGWCC	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SnaBI	TACGTA	1 cut(s)	339
Sse9I	AATT	6 cut(s)	265, 385, 413, 667, 682, 931
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	5 cut(s)	463, 466, 507, 659, 845
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	3 cut(s)	210, 516, 807
StuI	AGGCCT	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	317, 828
TaiI	ACGT	3 cut(s)	341, 404, 834
TaqI	TCGA	6 cut(s)	234, 269, 646, 672, 1116, 1128
TasI	AATT	6 cut(s)	265, 385, 413, 667, 682, 931
TatI	WGTACW	2 cut(s)	360, 573
TauI	GCSGC	2 cut(s)	468, 510
TfiI	GAWTC	4 cut(s)	231, 271, 1048, 1063
Tru1I	TTAA	2 cut(s)	14, 698
Tru9I	TTAA	2 cut(s)	14, 698
TscAI	CASTG	3 cut(s)	322, 481, 930
TseFI	GTSAC	2 cut(s)	205, 433
Tsp45I	GTSAC	2 cut(s)	205, 433
TspDTI	ATGAA	3 cut(s)	17, 1111, 1233
TspGWI	ACGGA	2 cut(s)	546, 1020
TspRI	CASTG	3 cut(s)	322, 481, 930
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	2 cut(s)	265, 385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XspI	CTAG	3 cut(s)	210, 516, 807
ZrmI	AGTACT	2 cut(s)	362, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.