Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008034

Physical Location & Seq

Genomic Coordinates Forward (+)

48487547 .. 48491944

Gene Structure 4398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029750

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAAGAGGTCTCCTAGTTATTCCTGCTCTTCTTCCTCATCTTCTTCATCTTCCTCATGTGCTGGCCCTGAAATTCCAACCAACCAGAAACAATCAGACAAACCCAAACCCAAACGCAGTAGAAAAACCCACAAGAACTCTGCAGAGAAATGCCCAGACACTGGTAGAAGAAGCTCAATTTACAGAGGGGTCACCAGTATTTTCCTTGCAATTCTGATCCTTCTCTCTGTGATTTTCTGTGATTTTATTTTTCCTGTTCTGGTCAAGAATAAACAAATATTTGATGAGGATGCTGCTGCTCATACATATGATCTTGCTGCCCTTAAGTATTGGGGTCCTGAAACCATCCTCAATTTCCCGCTGGAGACATACACCAAGGAACTTGATGAAATGCAGAAGGTGTCCAAGGAAGAATACTTGGCTTCATTGCGCCGCCGAAGCAGTGGGTTTTCTAGAGGCGTTTCAAAGTATCGTGGGGTGGCTAGGCATCACCATAATGGGCGATGGGAGGCGCGAATTGGGAGAGTTTTCGGAAACAAGTATTTGTACTTGGGAACTTACAACACACAAGAAGAGGCAGCAGCAGCATATGATGTGGCAGCTATAGAGTACAGAGGAGTAAATGCAGTGACCAATTTTGATATCAGCAACTACATTGACAAACTCAAGAGTGTAGAACCACAAGATCCACCTCCCAATGTAGCACAAGAACAAGTGGAAGTAAAACAAGAAGTACATCAATTTCAACCACAGCCACAGGAACAACAAGAGCAACAACAGGAACAAATATTGGTCTCCCCCAACCTTCAGTATCCACATGTTGTGCCTTGCATAGAAAGTAGTACCACTACAATGCAGGATGTCATGGATCCTAAAAATGATCACCAGTTCCAGTTCAATTGGAACTTTTTGGAAAATCTTGTTCCAGTTCCTGACATCCCACTGGATAATGAGCCCTCGGAGTTGCCGGACTTGTTTGGGGACTTGGGCTTTGAGGAAAATTTTGATTTGATGTTTGGAGGTGCAAGTGATGTCAATTTGAGTGGCTTATTGGACACTGAAGCTTGTGGGGTTCAAGCTGCTGTGCCAGGAAACTTGGACGATAATGGGTCTTCTCCTCCTTCTCCTTCTCCATCTTCAACTACTACATCGGTTTCTTGTAACTACTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

392

Amino Acids

43.59

Weight (kDa)

5.09

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	155 - 206	3.1e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320
fragaria_vesca	FvH4_7g04950 FvH4_7g04950 FvH4_7g04950
malus_domestica	MD02G1265300.v1.1 MD07G1054100.v1.1
prunus_persica	Prupe.2G060200_v2.0.a1
pyrus_communis	pycom02g22670 pycom07g04190
rosa_chinensis	RchiOBHm_Chr1g0331141
rosa_laevigata	RLG00000029750
rosa_multiflora	Rmu_sc0006123.1_g000003
rosa_roxburghii	Rroxscaffold_4G00319410
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400
rosa_wichuraiana	Rw1G009290 Rw3G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccII	CGCG	1 cut(s)	514
AciI	CCGC	2 cut(s)	359, 433
AclWI	GGATC	4 cut(s)	211, 680, 863, 876
AcsI	RAATTY	2 cut(s)	72, 1000
AcuI	CTGAAG	2 cut(s)	791, 1080
AfaI	GTAC	4 cut(s)	548, 611, 735, 844
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflII	CTTAAG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	817
AgsI	TTSAA	5 cut(s)	465, 746, 898, 1076, 1140
AjnI	CCWGG	1 cut(s)	1087
AluBI	AGCT	4 cut(s)	174, 602, 1064, 1079
AluI	AGCT	4 cut(s)	174, 602, 1064, 1079
Alw26I	GTCTC	3 cut(s)	15, 359, 799
AlwI	GGATC	4 cut(s)	211, 680, 863, 876
AlwNI	CAGNNNCTG	2 cut(s)	161, 932
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	8 cut(s)	293, 296, 317, 578, 581, 584, 599, 1079
ApoI	RAATTY	2 cut(s)	72, 1000
ArsI	GACNNNNNNTTYG	2 cut(s)	974, 1006
AspLEI	GCGC	2 cut(s)	432, 514
AspS9I	GGNCC	2 cut(s)	65, 335
AsuHPI	GGTGA	3 cut(s)	184, 482, 875
AvaII	GGWCC	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	957
BbsI	GAAGAC	1 cut(s)	1104
BbvI	GCAGC	8 cut(s)	280, 283, 304, 590, 593, 596, 611, 1066
BccI	CCATC	3 cut(s)	353, 498, 1141
BciT130I	CCWGG	1 cut(s)	1089
BciVI	GTATCC	1 cut(s)	822
BclI	TGATCA	1 cut(s)	880
BcoDI	GTCTC	3 cut(s)	15, 359, 799
BfaI	CTAG	3 cut(s)	15, 453, 483
BfmI	CTRYAG	2 cut(s)	141, 603
BfrI	CTTAAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	822
BisI	GCNGC	9 cut(s)	294, 297, 318, 433, 579, 582, 585, 600, 1080
BlsI	GCNGC	9 cut(s)	295, 298, 319, 434, 580, 583, 586, 601, 1081
Bme1390I	CCNGG	1 cut(s)	1089
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	65, 335
BmiI	GGNNCC	2 cut(s)	336, 870
BmrFI	CCNGG	1 cut(s)	1089
BmsI	GCATC	2 cut(s)	280, 496
BpiI	GAAGAC	1 cut(s)	1104
BpmI	CTGGAG	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	650
BsaI	GGTCTC	2 cut(s)	15, 799
BsaJI	CCNNGG	3 cut(s)	375, 405, 957
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	6 cut(s)	166, 195, 886, 892, 926, 948
Bse3DI	GCAATG	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	1089
BseDI	CCNNGG	3 cut(s)	375, 405, 957
BseGI	GGATG	4 cut(s)	295, 345, 865, 936
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	425
BseNI	ACTGG	6 cut(s)	166, 195, 886, 892, 926, 948
BseRI	GAGGAG	2 cut(s)	630, 1107
BseXI	GCAGC	8 cut(s)	280, 283, 304, 590, 593, 596, 611, 1066
Bsh1236I	CGCG	1 cut(s)	514
BshFI	GGCC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	968
BslFI	GGGAC	1 cut(s)	995
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	3 cut(s)	15, 359, 799
BsmFI	GGGAC	1 cut(s)	995
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	2 cut(s)	15, 799
Bsp1286I	GDGCHC	1 cut(s)	957
Bsp143I	GATC	5 cut(s)	216, 310, 685, 868, 880
BspACI	CCGC	2 cut(s)	359, 433
BspANI	GGCC	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	336, 870
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	4 cut(s)	211, 680, 863, 876
BspQI	GCTCTTC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	323
BspTNI	GGTCTC	2 cut(s)	15, 799
BsrDI	GCAATG	1 cut(s)	425
BsrI	ACTGG	6 cut(s)	166, 195, 886, 892, 926, 948
BssECI	CCNNGG	3 cut(s)	375, 405, 957
BssMI	GATC	5 cut(s)	216, 310, 685, 868, 880
BssT1I	CCWWGG	2 cut(s)	375, 405
Bst2UI	CCWGG	1 cut(s)	1089
Bst6I	CTCTTC	2 cut(s)	34, 567
BstAFI	CTTAAG	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	64
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	4 cut(s)	295, 345, 865, 936
BstFNI	CGCG	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	432, 514
BstKTI	GATC	5 cut(s)	219, 313, 688, 871, 883
BstMAI	GTCTC	3 cut(s)	15, 359, 799
BstMBI	GATC	5 cut(s)	216, 310, 685, 868, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	438, 584
BstNI	CCWGG	1 cut(s)	1089
BstNSI	RCATGY	1 cut(s)	821
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	1087
BstSFI	CTRYAG	2 cut(s)	141, 603
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	8 cut(s)	280, 283, 304, 590, 593, 596, 611, 1066
BstV2I	GAAGAC	1 cut(s)	1104
BstX2I	RGATCY	2 cut(s)	685, 868
BstYI	RGATCY	2 cut(s)	685, 868
BsuI	GTATCC	1 cut(s)	822
BsuRI	GGCC	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	517
BtsCI	GGATG	4 cut(s)	295, 345, 865, 936
BtsI	GCAGTG	2 cut(s)	448, 633
BtsIMutI	CAGTG	5 cut(s)	159, 448, 633, 941, 1056
Cac8I	GCNNGC	1 cut(s)	64
CaiI	CAGNNNCTG	2 cut(s)	161, 932
CfoI	GCGC	2 cut(s)	432, 514
Cfr13I	GGNCC	2 cut(s)	65, 335
Csp6I	GTAC	4 cut(s)	547, 610, 734, 843
CspCI	CAANNNNNGTGG	2 cut(s)	1024, 1059
CviAII	CATG	3 cut(s)	57, 818, 865
CviQI	GTAC	4 cut(s)	547, 610, 734, 843
DpnI	GATC	5 cut(s)	218, 312, 687, 870, 882
DpnII	GATC	5 cut(s)	216, 310, 685, 868, 880
Eam1104I	CTCTTC	2 cut(s)	34, 567
EarI	CTCTTC	2 cut(s)	34, 567
Eco130I	CCWWGG	2 cut(s)	375, 405
Eco24I	GRGCYC	1 cut(s)	957
Eco31I	GGTCTC	2 cut(s)	15, 799
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	335
Eco57I	CTGAAG	2 cut(s)	791, 1080
Eco91I	GGTNACC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	1087
EcoRV	GATATC	1 cut(s)	643
EcoT14I	CCWWGG	2 cut(s)	375, 405
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	2 cut(s)	375, 405
FaeI	CATG	3 cut(s)	60, 821, 868
FaqI	GGGAC	1 cut(s)	995
FatI	CATG	3 cut(s)	56, 817, 864
FauI	CCCGC	1 cut(s)	366
FauNDI	CATATG	2 cut(s)	307, 589
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	9 cut(s)	294, 297, 318, 433, 579, 582, 585, 600, 1080
FokI	GGATG	4 cut(s)	302, 332, 872, 923
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	9 cut(s)	294, 297, 318, 433, 579, 582, 585, 600, 1080
FspBI	CTAG	3 cut(s)	15, 453, 483
GlaI	GCGC	2 cut(s)	431, 513
GluI	GCNGC	9 cut(s)	294, 297, 318, 433, 579, 582, 585, 600, 1080
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	968
HhaI	GCGC	2 cut(s)	432, 514
Hin1II	CATG	3 cut(s)	60, 821, 868
Hin6I	GCGC	2 cut(s)	430, 512
HinP1I	GCGC	2 cut(s)	430, 512
HindIII	AAGCTT	1 cut(s)	1062
HpaII	CCGG	1 cut(s)	968
HphI	GGTGA	3 cut(s)	184, 482, 875
Hpy188I	TCNGA	4 cut(s)	97, 216, 533, 961
Hpy188III	TCNNGA	5 cut(s)	265, 338, 453, 667, 932
HpyAV	CCTTC	5 cut(s)	230, 391, 815, 1131, 1137
HpyCH4V	TGCA	7 cut(s)	143, 209, 394, 626, 831, 856, 1025
HpyF10VI	GCNNNNNNNGC	2 cut(s)	438, 584
Hsp92II	CATG	3 cut(s)	60, 821, 868
HspAI	GCGC	2 cut(s)	430, 512
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	5 cut(s)	216, 310, 685, 868, 880
LguI	GCTCTTC	1 cut(s)	34
Lsp1109I	GCAGC	8 cut(s)	280, 283, 304, 590, 593, 596, 611, 1066
LweI	GCATC	2 cut(s)	280, 496
MaeI	CTAG	3 cut(s)	15, 453, 483
MaeIII	GTNAC	3 cut(s)	190, 628, 1160
MalI	GATC	5 cut(s)	218, 312, 687, 870, 882
MboI	GATC	5 cut(s)	216, 310, 685, 868, 880
MfeI	CAATTG	1 cut(s)	898
MflI	RGATCY	2 cut(s)	685, 868
MhlI	GDGCHC	1 cut(s)	957
MmeI	TCCRAC	1 cut(s)	101
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	3 cut(s)	306, 495, 851
MspA1I	CMGCKG	1 cut(s)	361
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	1 cut(s)	968
MspR9I	CCNGG	1 cut(s)	1089
MunI	CAATTG	1 cut(s)	898
MvaI	CCWGG	1 cut(s)	1089
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	2 cut(s)	438, 584
NdeI	CATATG	2 cut(s)	307, 589
NdeII	GATC	5 cut(s)	216, 310, 685, 868, 880
NlaIII	CATG	3 cut(s)	60, 821, 868
NlaIV	GGNNCC	2 cut(s)	336, 870
NmuCI	GTSAC	2 cut(s)	190, 628
NspI	RCATGY	1 cut(s)	821
PciI	ACATGT	1 cut(s)	817
PciSI	GCTCTTC	1 cut(s)	34
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	9 cut(s)	295, 298, 319, 434, 580, 583, 586, 601, 1081
PpuMI	RGGWCCY	1 cut(s)	335
PscI	ACATGT	1 cut(s)	817
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	1087
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	1087
PspN4I	GGNNCC	2 cut(s)	336, 870
PspPI	GGNCC	2 cut(s)	65, 335
PspPPI	RGGWCCY	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	2 cut(s)	161, 932
PsuI	RGATCY	2 cut(s)	685, 868
RsaI	GTAC	4 cut(s)	548, 611, 735, 844
RsaNI	GTAC	4 cut(s)	547, 610, 734, 843
RseI	CAYNNNNRTG	3 cut(s)	306, 495, 851
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	9 cut(s)	294, 297, 318, 433, 579, 582, 585, 600, 1080
Sau3AI	GATC	5 cut(s)	216, 310, 685, 868, 880
Sau96I	GGNCC	2 cut(s)	65, 335
ScrFI	CCNGG	1 cut(s)	1089
SduI	GDGCHC	1 cut(s)	957
SetI	ASST	9 cut(s)	11, 176, 402, 604, 694, 807, 1024, 1066, 1081
SfaNI	GCATC	2 cut(s)	280, 496
SfcI	CTRYAG	2 cut(s)	141, 603
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	3 cut(s)	306, 495, 851
SmlI	CTYRAG	2 cut(s)	323, 665
SmoI	CTYRAG	2 cut(s)	323, 665
SsiI	CCGC	2 cut(s)	359, 433
SspI	AATATT	2 cut(s)	279, 789
SspMI	CTAG	3 cut(s)	15, 453, 483
StyD4I	CCNGG	1 cut(s)	1087
StyI	CCWWGG	2 cut(s)	375, 405
TatI	WGTACW	3 cut(s)	546, 609, 733
TauI	GCSGC	1 cut(s)	435
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	5 cut(s)	166, 448, 633, 948, 1063
TseFI	GTSAC	2 cut(s)	190, 628
TseI	GCWGC	8 cut(s)	293, 296, 317, 578, 581, 584, 599, 1079
Tsp45I	GTSAC	2 cut(s)	190, 628
TspDTI	ATGAA	4 cut(s)	17, 36, 402, 414
TspRI	CASTG	5 cut(s)	166, 448, 633, 948, 1063
Van91I	CCANNNNNTGG	1 cut(s)	161
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	2 cut(s)	72, 1000
XbaI	TCTAGA	1 cut(s)	452
XceI	RCATGY	1 cut(s)	821
XspI	CTAG	3 cut(s)	15, 453, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.