Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006123.1

Orthogroup ID

OG0008034

Physical Location & Seq

Genomic Coordinates Reverse (-)

3856 .. 8691

Gene Structure 4836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006123.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgaagaggtctcctagttattcttgctcttcttcctcttcttcttcatcttcctcatgtgctggccctgaaattccaaccaccctgaaacaatcagacaaccccaaacccaaacgcagtagaaaaacccacaagaactctgcagagaaatgcccagactcaggcggaagaagctcaatttacagaggggtcaccaggcatagatggactggaaggtatgaagctcatctctgggataagacttcatggaatgacattcagaaaaagaaaggacggcaaggggcctatgatagtgaggatgctgctgctcatacatatgatcttgctgcccttaagtattggggtcctgaaaccatcctcaacttcccgctggagacatacaccaaggaacttgatgaaatgcagaaggtgtccaaggaagaatacttggcttcattgcgccgccggagcagtgggttttctagaggcgtttcaaagtatcgtggggtggctaggcatcaccataatgggcgatgggaggcgcgaattgggagagttttcggaaacaagtatttgtacctgggaacttacaacacacaagaagaggcagcagccgcatatgatgtggcagctatagagtacagaggagtaaatgcagtgaccaattttgatatcagcaactacattgacaagctcaagagtgtagaaccacaagatccacctcccaatgtagcacaagaacaattggaagtaaaacaagaagtacatcaatttcaaccacagccacaggaacaacaagagcaacaacaggaacaaatattggtctcccccaaccttcagtatccacatgttgtgccttgcatagaaagtagtaccactacaatgcaggatgtcatggatcctacaaatgatcaccagttccagttcaattggaactttttggaaaatcttgttccagttcctgacatcccactggataatgagccctcggagttgccggacttgtttggggacttgggctttgaggaaaattttgatttgatgtttggaggtgcaagtgatgtcaatttgagtggcttattggacactgaagcttgtggggttcaagctgctgtgccaggaaacttggacgataatgggtcttctcctccttctccttctccatcttcaactactacatcggtttcttgtaactactctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

394

Amino Acids

44.03

Weight (kDa)

5.3

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320
fragaria_vesca	FvH4_7g04950 FvH4_7g04950 FvH4_7g04950
malus_domestica	MD02G1265300.v1.1 MD07G1054100.v1.1
prunus_persica	Prupe.2G060200_v2.0.a1
pyrus_communis	pycom02g22670 pycom07g04190
rosa_chinensis	RchiOBHm_Chr1g0331141
rosa_laevigata	RLG00000029750
rosa_multiflora	Rmu_sc0006123.1_g000003
rosa_roxburghii	Rroxscaffold_4G00319410
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400
rosa_wichuraiana	Rw1G009290 Rw3G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	523
AciI	CCGC	4 cut(s)	165, 368, 442, 594
AclWI	GGATC	3 cut(s)	689, 872, 885
AcsI	RAATTY	2 cut(s)	72, 1009
AcuI	CTGAAG	2 cut(s)	800, 1089
AfaI	GTAC	4 cut(s)	557, 620, 744, 853
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	5 cut(s)	474, 755, 907, 1085, 1149
AjnI	CCWGG	3 cut(s)	194, 558, 1096
AluBI	AGCT	6 cut(s)	174, 224, 611, 673, 1073, 1088
AluI	AGCT	6 cut(s)	174, 224, 611, 673, 1073, 1088
Alw26I	GTCTC	3 cut(s)	15, 368, 808
AlwI	GGATC	3 cut(s)	689, 872, 885
AlwNI	CAGNNNCTG	1 cut(s)	941
AoxI	GGCC	2 cut(s)	64, 282
ApeKI	GCWGC	7 cut(s)	302, 305, 326, 587, 590, 608, 1088
ApoI	RAATTY	2 cut(s)	72, 1009
ArsI	GACNNNNNNTTYG	2 cut(s)	983, 1015
AspLEI	GCGC	2 cut(s)	441, 523
AspS9I	GGNCC	3 cut(s)	65, 282, 344
AsuHPI	GGTGA	3 cut(s)	184, 491, 884
AvaII	GGWCC	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	877
BanII	GRGCYC	1 cut(s)	966
BbsI	GAAGAC	1 cut(s)	1113
BbvI	GCAGC	7 cut(s)	289, 292, 313, 599, 602, 620, 1075
BccI	CCATC	4 cut(s)	198, 362, 507, 1150
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	3 cut(s)	196, 560, 1098
BciVI	GTATCC	1 cut(s)	831
BclI	TGATCA	1 cut(s)	889
BcoDI	GTCTC	3 cut(s)	15, 368, 808
BfaI	CTAG	3 cut(s)	15, 462, 492
BfmI	CTRYAG	2 cut(s)	141, 612
BfrI	CTTAAG	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	831
BisI	GCNGC	9 cut(s)	303, 306, 327, 442, 588, 591, 594, 609, 1089
BlsI	GCNGC	9 cut(s)	304, 307, 328, 443, 589, 592, 595, 610, 1090
Bme1390I	CCNGG	3 cut(s)	196, 560, 1098
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	65, 282, 344
BmiI	GGNNCC	3 cut(s)	283, 345, 879
BmrFI	CCNGG	3 cut(s)	196, 560, 1098
BmsI	GCATC	2 cut(s)	289, 505
BpiI	GAAGAC	1 cut(s)	1113
BpmI	CTGGAG	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	659
BsaI	GGTCTC	2 cut(s)	15, 808
BsaJI	CCNNGG	4 cut(s)	384, 414, 559, 966
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	5 cut(s)	214, 895, 901, 935, 957
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	3 cut(s)	196, 560, 1098
BseDI	CCNNGG	4 cut(s)	384, 414, 559, 966
BseGI	GGATG	4 cut(s)	304, 354, 874, 945
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	5 cut(s)	214, 895, 901, 935, 957
BseRI	GAGGAG	2 cut(s)	639, 1116
BseXI	GCAGC	7 cut(s)	289, 292, 313, 599, 602, 620, 1075
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	2 cut(s)	66, 284
BsiSI	CCGG	2 cut(s)	445, 977
BslFI	GGGAC	1 cut(s)	1004
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	3 cut(s)	15, 368, 808
BsmFI	GGGAC	1 cut(s)	1004
BsnI	GGCC	2 cut(s)	66, 284
Bso31I	GGTCTC	2 cut(s)	15, 808
Bsp1286I	GDGCHC	1 cut(s)	966
Bsp143I	GATC	4 cut(s)	319, 694, 877, 889
BspACI	CCGC	4 cut(s)	165, 368, 442, 594
BspANI	GGCC	2 cut(s)	66, 284
BspCNI	CTCAG	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	523
BspLI	GGNNCC	3 cut(s)	283, 345, 879
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	3 cut(s)	689, 872, 885
BspQI	GCTCTTC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	332
BspTNI	GGTCTC	2 cut(s)	15, 808
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	5 cut(s)	214, 895, 901, 935, 957
BssECI	CCNNGG	4 cut(s)	384, 414, 559, 966
BssMI	GATC	4 cut(s)	319, 694, 877, 889
BssT1I	CCWWGG	2 cut(s)	384, 414
Bst2UI	CCWGG	3 cut(s)	196, 560, 1098
Bst6I	CTCTTC	3 cut(s)	34, 43, 576
BstAFI	CTTAAG	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	160
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	4 cut(s)	304, 354, 874, 945
BstFNI	CGCG	1 cut(s)	523
BstHHI	GCGC	2 cut(s)	441, 523
BstKTI	GATC	4 cut(s)	322, 697, 880, 892
BstMAI	GTCTC	3 cut(s)	15, 368, 808
BstMBI	GATC	4 cut(s)	319, 694, 877, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 447, 593
BstNI	CCWGG	3 cut(s)	196, 560, 1098
BstNSI	RCATGY	1 cut(s)	830
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	3 cut(s)	194, 558, 1096
BstSFI	CTRYAG	2 cut(s)	141, 612
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	7 cut(s)	289, 292, 313, 599, 602, 620, 1075
BstV2I	GAAGAC	1 cut(s)	1113
BstX2I	RGATCY	2 cut(s)	694, 877
BstYI	RGATCY	2 cut(s)	694, 877
BsuI	GTATCC	1 cut(s)	831
BsuRI	GGCC	2 cut(s)	66, 284
BtgZI	GCGATG	1 cut(s)	526
BtsCI	GGATG	4 cut(s)	304, 354, 874, 945
BtsI	GCAGTG	2 cut(s)	457, 642
BtsIMutI	CAGTG	4 cut(s)	457, 642, 950, 1065
Cac8I	GCNNGC	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	941
CfoI	GCGC	2 cut(s)	441, 523
Cfr13I	GGNCC	3 cut(s)	65, 282, 344
Csp6I	GTAC	4 cut(s)	556, 619, 743, 852
CspCI	CAANNNNNGTGG	2 cut(s)	1033, 1068
CviAII	CATG	4 cut(s)	57, 246, 827, 874
CviQI	GTAC	4 cut(s)	556, 619, 743, 852
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	4 cut(s)	321, 696, 879, 891
DpnII	GATC	4 cut(s)	319, 694, 877, 889
Eam1104I	CTCTTC	3 cut(s)	34, 43, 576
EarI	CTCTTC	3 cut(s)	34, 43, 576
EciI	GGCGGA	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	384, 414
Eco24I	GRGCYC	1 cut(s)	966
Eco31I	GGTCTC	2 cut(s)	15, 808
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	2 cut(s)	800, 1089
Eco91I	GGTNACC	1 cut(s)	190
EcoO109I	RGGNCCY	2 cut(s)	282, 344
EcoO65I	GGTNACC	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	194, 558, 1096
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	384, 414
EcoT38I	GRGCYC	1 cut(s)	966
ErhI	CCWWGG	2 cut(s)	384, 414
FaeI	CATG	4 cut(s)	60, 249, 830, 877
FaqI	GGGAC	1 cut(s)	1004
FatI	CATG	4 cut(s)	56, 245, 826, 873
FauI	CCCGC	1 cut(s)	375
FauNDI	CATATG	2 cut(s)	316, 598
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	9 cut(s)	303, 306, 327, 442, 588, 591, 594, 609, 1089
FokI	GGATG	4 cut(s)	311, 341, 881, 932
FriOI	GRGCYC	1 cut(s)	966
Fsp4HI	GCNGC	9 cut(s)	303, 306, 327, 442, 588, 591, 594, 609, 1089
FspBI	CTAG	3 cut(s)	15, 462, 492
GlaI	GCGC	2 cut(s)	440, 522
GluI	GCNGC	9 cut(s)	303, 306, 327, 442, 588, 591, 594, 609, 1089
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	66, 284
HapII	CCGG	2 cut(s)	445, 977
HhaI	GCGC	2 cut(s)	441, 523
Hin1II	CATG	4 cut(s)	60, 249, 830, 877
Hin6I	GCGC	2 cut(s)	439, 521
HinP1I	GCGC	2 cut(s)	439, 521
HindIII	AAGCTT	1 cut(s)	1071
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	445, 977
HphI	GGTGA	3 cut(s)	184, 491, 884
Hpy188I	TCNGA	4 cut(s)	97, 261, 542, 970
Hpy188III	TCNNGA	4 cut(s)	347, 462, 676, 941
HpyAV	CCTTC	5 cut(s)	207, 400, 824, 1140, 1146
HpyCH4V	TGCA	6 cut(s)	143, 403, 635, 840, 865, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 447, 593
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	60, 249, 830, 877
HspAI	GCGC	2 cut(s)	439, 521
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	4 cut(s)	319, 694, 877, 889
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	447
Lsp1109I	GCAGC	7 cut(s)	289, 292, 313, 599, 602, 620, 1075
LweI	GCATC	2 cut(s)	289, 505
MaeI	CTAG	3 cut(s)	15, 462, 492
MaeIII	GTNAC	3 cut(s)	190, 637, 1169
MalI	GATC	4 cut(s)	321, 696, 879, 891
MboI	GATC	4 cut(s)	319, 694, 877, 889
MfeI	CAATTG	2 cut(s)	722, 907
MflI	RGATCY	2 cut(s)	694, 877
MhlI	GDGCHC	1 cut(s)	966
MluCI	AATT	9 cut(s)	72, 177, 525, 643, 722, 749, 907, 1009, 1045
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	101
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	3 cut(s)	315, 504, 860
MspA1I	CMGCKG	1 cut(s)	370
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	2 cut(s)	445, 977
MspR9I	CCNGG	3 cut(s)	196, 560, 1098
MunI	CAATTG	2 cut(s)	722, 907
MvaI	CCWGG	3 cut(s)	196, 560, 1098
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	3 cut(s)	171, 447, 593
NdeI	CATATG	2 cut(s)	316, 598
NdeII	GATC	4 cut(s)	319, 694, 877, 889
NlaIII	CATG	4 cut(s)	60, 249, 830, 877
NlaIV	GGNNCC	3 cut(s)	283, 345, 879
NmuCI	GTSAC	2 cut(s)	190, 637
NspI	RCATGY	1 cut(s)	830
PciI	ACATGT	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	34
PkrI	GCNGC	9 cut(s)	304, 307, 328, 443, 589, 592, 595, 610, 1090
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	344
PscI	ACATGT	1 cut(s)	826
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	3 cut(s)	194, 558, 1096
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	3 cut(s)	194, 558, 1096
PspN4I	GGNNCC	3 cut(s)	283, 345, 879
PspPI	GGNCC	3 cut(s)	65, 282, 344
PspPPI	RGGWCCY	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	941
PsuI	RGATCY	2 cut(s)	694, 877
RsaI	GTAC	4 cut(s)	557, 620, 744, 853
RsaNI	GTAC	4 cut(s)	556, 619, 743, 852
RseI	CAYNNNNRTG	3 cut(s)	315, 504, 860
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	9 cut(s)	303, 306, 327, 442, 588, 591, 594, 609, 1089
Sau3AI	GATC	4 cut(s)	319, 694, 877, 889
Sau96I	GGNCC	3 cut(s)	65, 282, 344
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	196, 560, 1098
SduI	GDGCHC	1 cut(s)	966
SfaNI	GCATC	2 cut(s)	289, 505
SfcI	CTRYAG	2 cut(s)	141, 612
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	3 cut(s)	315, 504, 860
SmlI	CTYRAG	2 cut(s)	332, 674
SmoI	CTYRAG	2 cut(s)	332, 674
Sse9I	AATT	9 cut(s)	72, 177, 525, 643, 722, 749, 907, 1009, 1045
SsiI	CCGC	4 cut(s)	165, 368, 442, 594
SspI	AATATT	1 cut(s)	798
SspMI	CTAG	3 cut(s)	15, 462, 492
StyD4I	CCNGG	3 cut(s)	194, 558, 1096
StyI	CCWWGG	2 cut(s)	384, 414
TasI	AATT	9 cut(s)	72, 177, 525, 643, 722, 749, 907, 1009, 1045
TatI	WGTACW	2 cut(s)	618, 742
TauI	GCSGC	2 cut(s)	444, 596
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	4 cut(s)	457, 642, 957, 1072
TseFI	GTSAC	2 cut(s)	190, 637
TseI	GCWGC	7 cut(s)	302, 305, 326, 587, 590, 608, 1088
Tsp45I	GTSAC	2 cut(s)	190, 637
TspDTI	ATGAA	6 cut(s)	17, 36, 234, 234, 411, 423
TspRI	CASTG	4 cut(s)	457, 642, 957, 1072
Vha464I	CTTAAG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	2 cut(s)	72, 1009
XbaI	TCTAGA	1 cut(s)	461
XceI	RCATGY	1 cut(s)	830
XspI	CTAG	3 cut(s)	15, 462, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.