MD02G1265300.v1.1

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
31954554 .. 31959766
5213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1265300.v1.1.491

Sequence Viewer

Length: 1296 bp
ATGCCACTCCTCCTTCCTCGTCTTATGCTTCTCCAGAATATCCGGATGAAGAGGTCCTCTAGTTTCTCTTGCTCTTCTCTTACTTCTTCTTCTTCTTCGTCTTCGTGCGCTGGGCCGGAGATTCCGAAACACAACGTCCAGGCAGAGATTCAGAAACCGAAACCAAAACGCGTTCGAAAGAACCGAAAAACCGCAGAAGCAGCAGCAGCAGAAGACAACACCCCAAAGTCAGGATCAGGAGGCAGAAGAAGCTCCATTTACAGAGGGGTCACCAGGCACAGATGGACCGGCCGGTTTGAAGCTCATCTGTGGGACAAGAGTTCATGGAACAACATCCAGAACAAGAAGGGACGACAAGGGGCCTATGATAGCGAAGAGGATGCTGCTCATACGTACGATCTAGCTGCCCTTAAATATTGGGGGCCTGCTACAATACTCAATTTCCCGCTAGAAACATACACAAAGGAAATTGAAGAAATGCAAAAGGCTACCAGGGAAGAATACCTAGCATCATTGCGCCGGCTGAGCAATGGATTTTCGAGAGGAGTTTCAAAGTACCGTGGGGTGGCGAGGCATCATCACAATGGGAGATGGGAGGCGAGAATCGGAAGAGTTTTCGGAAACAAGTATTTATACCTCGGAACTTATAATACACAAGAGGAGGCAGCAGCTGCATATGATGTGGCGGCAATAGAGTACAGAGGAACAAATGCAGTGACCAATTTTGATATCAGCAACTACATTGACAGAGTCAAGAAGAAAATCCACCCTCTGGATCGTCAGGAATCAGAGGGTCAACCGCCTTCCAAGCGCTCGAACATTGGACCACCCAAACAAGAAGAAGTCGTCGAACGCAAAGTGAACCAATTGCAACCGCAGCAGCAGCAGCAACAAGAACAACAAGAACGAACGATCTCGCCGCAACTTCATTGCCCTCATCTGCTGCATTGCATCGAAAGCAGTACAATGGAGCAAGTAATGGATCCTGGTCATGCGAAGGAGCACCATTTTAGTTGGAACTTTTTGGACACCGAAATGATGACTCAGCAGCTTGCGGTTCCTGATGACATCCCTCTTGACAACAAGTCGTTGGACTTGCCGGACTCGTTCGAGGACTTGGGGTTCGAAGAGAATTTTGACCTGATATTTGGTGCAGCTGGTGATGGCAGTTTAGGTGGCTTGATGGAATCTGCGGGGTGTGGGGTGGATCAGGTGGGTGTAGACGTCCCAAGAAACTTGGAGGACAATGGGTCTACTTTTTCTTCATCATCAACAACTACCTCTCTTTCTTTTTAA

Protein Analysis

432

Amino Acids

48.44

Weight (kDa)

6.72

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 87 - 141 3.5e-08 AP2 domain
AP2 PF00847 184 - 235 2.8e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AatII GACGTC 1 cut(s) 1227
AccB7I CCANNNNNTGG 1 cut(s) 772
AccI GTMKAC 2 cut(s) 1221, 1253
AccII CGCG 1 cut(s) 171
AccIII TCCGGA 1 cut(s) 42
AciI CCGC 8 cut(s) 192, 446, 686, 800, 875, 920, 1055, 1193
AclWI GGATC 5 cut(s) 241, 783, 977, 990, 1215
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 1132
AcyI GRCGYC 1 cut(s) 1224
AfaI GTAC 4 cut(s) 395, 557, 698, 964
AfeI AGCGCT 1 cut(s) 812
AfiI CCNNNNNNNGG 3 cut(s) 230, 565, 772
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 3 cut(s) 299, 473, 552
AhdI GACNNNNNGTC 2 cut(s) 1084, 1249
AjnI CCWGG 4 cut(s) 138, 272, 491, 985
AloI GAACNNNNNNTCC 2 cut(s) 1106, 1138
AluBI AGCT 6 cut(s) 252, 302, 404, 671, 1051, 1157
AluI AGCT 6 cut(s) 252, 302, 404, 671, 1051, 1157
Alw21I GWGCWC 1 cut(s) 1005
AlwI GGATC 5 cut(s) 241, 783, 977, 990, 1215
AlwNI CAGNNNCTG 1 cut(s) 671
Aor13HI TCCGGA 1 cut(s) 42
Aor51HI AGCGCT 1 cut(s) 812
AoxI GGCC 4 cut(s) 113, 289, 360, 422
ApoI RAATTY 1 cut(s) 1132
ArsI GACNNNNNNTTYG 4 cut(s) 1106, 1130, 1138, 1162
AspLEI GCGC 3 cut(s) 110, 519, 813
AspS9I GGNCC 6 cut(s) 54, 113, 285, 360, 422, 824
AsuHPI GGTGA 2 cut(s) 262, 1172
AsuII TTCGAA 2 cut(s) 175, 1125
AvaII GGWCC 3 cut(s) 54, 285, 824
BamHI GGATCC 1 cut(s) 982
BbsI GAAGAC 2 cut(s) 93, 219
Bbv12I GWGCWC 1 cut(s) 1005
BccI CCATC 4 cut(s) 276, 585, 1157, 1177
BcgI CGANNNNNNTGC 4 cut(s) 362, 386, 396, 420
BciT130I CCWGG 4 cut(s) 140, 274, 493, 987
BfaI CTAG 4 cut(s) 60, 401, 449, 506
BfoI RGCGCY 1 cut(s) 814
BlpI GCTNAGC 1 cut(s) 524
Bme1390I CCNGG 4 cut(s) 140, 274, 493, 987
Bme18I GGWCC 3 cut(s) 54, 285, 824
BmeRI GACNNNNNGTC 2 cut(s) 1084, 1249
BmgT120I GGNCC 6 cut(s) 54, 113, 285, 360, 422, 824
BmiI GGNNCC 4 cut(s) 361, 423, 984, 1059
BmrFI CCNGG 4 cut(s) 140, 274, 493, 987
BmsI GCATC 4 cut(s) 370, 518, 583, 960
BpiI GAAGAC 2 cut(s) 93, 219
BpmI CTGGAG 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 524
Bpu14I TTCGAA 2 cut(s) 175, 1125
BsaAI YACGTR 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 1224
BsaJI CCNNGG 3 cut(s) 492, 559, 637
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 565, 772
Bse118I RCCGGY 3 cut(s) 287, 291, 519
Bse3DI GCAATG 4 cut(s) 512, 535, 928, 946
BseAI TCCGGA 1 cut(s) 42
BseBI CCWGG 4 cut(s) 140, 274, 493, 987
BseDI CCNNGG 3 cut(s) 492, 559, 637
BseGI GGATG 4 cut(s) 51, 333, 385, 1068
BseLI CCNNNNNNNGG 3 cut(s) 230, 565, 772
BseMI GCAATG 4 cut(s) 512, 535, 928, 946
BseMII CTCAG 2 cut(s) 515, 1058
BseRI GAGGAG 2 cut(s) 558, 674
BseX3I CGGCCG 1 cut(s) 289
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 1173
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 4 cut(s) 115, 291, 362, 424
BsiEI CGRYCG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 1005
BsiSI CCGG 6 cut(s) 43, 116, 288, 292, 520, 1100
BsiWI CGTACG 1 cut(s) 393
BslFI GGGAC 3 cut(s) 326, 363, 1211
BslI CCNNNNNNNGG 3 cut(s) 230, 565, 772
BsmFI GGGAC 3 cut(s) 326, 363, 1211
BsnI GGCC 4 cut(s) 115, 291, 362, 424
Bsp119I TTCGAA 2 cut(s) 175, 1125
Bsp1286I GDGCHC 1 cut(s) 1005
Bsp13I TCCGGA 1 cut(s) 42
Bsp143I GATC 6 cut(s) 233, 397, 775, 912, 982, 1207
Bsp1720I GCTNAGC 1 cut(s) 524
BspACI CCGC 8 cut(s) 192, 446, 686, 800, 875, 920, 1055, 1193
BspANI GGCC 4 cut(s) 115, 291, 362, 424
BspCNI CTCAG 2 cut(s) 516, 1057
BspEI TCCGGA 1 cut(s) 42
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 4 cut(s) 361, 423, 984, 1059
BspPI GGATC 5 cut(s) 241, 783, 977, 990, 1215
BspQI GCTCTTC 1 cut(s) 79
BspT104I TTCGAA 2 cut(s) 175, 1125
BsrDI GCAATG 4 cut(s) 512, 535, 928, 946
BsrFI RCCGGY 3 cut(s) 287, 291, 519
BssAI RCCGGY 3 cut(s) 287, 291, 519
BssECI CCNNGG 3 cut(s) 492, 559, 637
BssMI GATC 6 cut(s) 233, 397, 775, 912, 982, 1207
BssNI GRCGYC 1 cut(s) 1224
Bst2UI CCWGG 4 cut(s) 140, 274, 493, 987
Bst4CI ACNGT 1 cut(s) 560
Bst6I CTCTTC 5 cut(s) 44, 79, 369, 604, 1122
BstACI GRCGYC 1 cut(s) 1224
BstAPI GCANNNNNTGC 1 cut(s) 671
BstBAI YACGTR 1 cut(s) 393
BstBI TTCGAA 2 cut(s) 175, 1125
BstC8I GCNNGC 3 cut(s) 426, 521, 1053
BstDEI CTNAG 2 cut(s) 524, 1044
BstDSI CCRYGG 1 cut(s) 559
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 4 cut(s) 51, 333, 385, 1068
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 814
BstHHI GCGC 3 cut(s) 110, 519, 813
BstKTI GATC 6 cut(s) 236, 400, 778, 915, 985, 1210
BstMBI GATC 6 cut(s) 233, 397, 775, 912, 982, 1207
BstMCI CGRYCG 1 cut(s) 292
BstNI CCWGG 4 cut(s) 140, 274, 493, 987
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 4 cut(s) 138, 272, 491, 985
BstSNI TACGTA 1 cut(s) 393
BstUI CGCG 1 cut(s) 171
BstV2I GAAGAC 2 cut(s) 93, 219
BstX2I RGATCY 1 cut(s) 982
BstYI RGATCY 1 cut(s) 982
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 4 cut(s) 115, 291, 362, 424
BtgI CCRYGG 1 cut(s) 559
BtsCI GGATG 4 cut(s) 51, 333, 385, 1068
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 1 cut(s) 720
Cac8I GCNNGC 3 cut(s) 426, 521, 1053
CaiI CAGNNNCTG 1 cut(s) 671
CfoI GCGC 3 cut(s) 110, 519, 813
Cfr10I RCCGGY 3 cut(s) 287, 291, 519
Cfr13I GGNCC 6 cut(s) 54, 113, 285, 360, 422, 824
Csp6I GTAC 4 cut(s) 394, 556, 697, 963
CviAII CATG 2 cut(s) 324, 992
CviQI GTAC 4 cut(s) 394, 556, 697, 963
DdeI CTNAG 2 cut(s) 524, 1044
DpnI GATC 6 cut(s) 235, 399, 777, 914, 984, 1209
DpnII GATC 6 cut(s) 233, 397, 775, 912, 982, 1207
DriI GACNNNNNGTC 2 cut(s) 1084, 1249
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
Eam1104I CTCTTC 5 cut(s) 44, 79, 369, 604, 1122
Eam1105I GACNNNNNGTC 2 cut(s) 1084, 1249
EarI CTCTTC 5 cut(s) 44, 79, 369, 604, 1122
EclXI CGGCCG 1 cut(s) 289
Eco105I TACGTA 1 cut(s) 393
Eco32I GATATC 1 cut(s) 730
Eco47I GGWCC 3 cut(s) 54, 285, 824
Eco47III AGCGCT 1 cut(s) 812
Eco52I CGGCCG 1 cut(s) 289
Eco91I GGTNACC 1 cut(s) 268
EcoO109I RGGNCCY 3 cut(s) 54, 360, 422
EcoO65I GGTNACC 1 cut(s) 268
EcoRII CCWGG 4 cut(s) 138, 272, 491, 985
EcoRV GATATC 1 cut(s) 730
FaeI CATG 2 cut(s) 327, 995
FaqI GGGAC 3 cut(s) 326, 363, 1211
FatI CATG 2 cut(s) 323, 991
FauI CCCGC 2 cut(s) 453, 1186
FauNDI CATATG 1 cut(s) 676
FblI GTMKAC 2 cut(s) 1221, 1253
FokI GGATG 4 cut(s) 58, 320, 392, 1055
FspBI CTAG 4 cut(s) 60, 401, 449, 506
GlaI GCGC 3 cut(s) 109, 518, 812
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 17
HaeII RGCGCY 1 cut(s) 814
HaeIII GGCC 4 cut(s) 115, 291, 362, 424
HapII CCGG 6 cut(s) 43, 116, 288, 292, 520, 1100
HhaI GCGC 3 cut(s) 110, 519, 813
Hin1I GRCGYC 1 cut(s) 1224
Hin1II CATG 2 cut(s) 327, 995
Hin6I GCGC 3 cut(s) 108, 517, 811
HinP1I GCGC 3 cut(s) 108, 517, 811
HincII GTYRAC 1 cut(s) 797
HindII GTYRAC 1 cut(s) 797
HinfI GANTC 8 cut(s) 121, 148, 603, 750, 785, 1042, 1103, 1187
HpaII CCGG 6 cut(s) 43, 116, 288, 292, 520, 1100
HphI GGTGA 2 cut(s) 262, 1172
Hpy166II GTNNAC 4 cut(s) 797, 862, 1222, 1254
Hpy188I TCNGA 6 cut(s) 126, 153, 608, 620, 641, 790
Hpy8I GTNNAC 4 cut(s) 797, 862, 1222, 1254
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 4 cut(s) 23, 340, 813, 991
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4IV ACGT 3 cut(s) 135, 392, 1224
HpyCH4V TGCA 7 cut(s) 481, 674, 713, 871, 946, 951, 1154
HpyF3I CTNAG 2 cut(s) 524, 1044
HpySE526I ACGT 3 cut(s) 135, 392, 1224
Hsp92I GRCGYC 1 cut(s) 1224
Hsp92II CATG 2 cut(s) 327, 995
HspAI GCGC 3 cut(s) 108, 517, 811
Kpn2I TCCGGA 1 cut(s) 42
KroI GCCGGC 1 cut(s) 519
KroNI GCCGGC 1 cut(s) 521
Kzo9I GATC 6 cut(s) 233, 397, 775, 912, 982, 1207
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 3 cut(s) 257, 970, 1000
LweI GCATC 4 cut(s) 370, 518, 583, 960
MaeI CTAG 4 cut(s) 60, 401, 449, 506
MaeII ACGT 3 cut(s) 135, 392, 1224
MaeIII GTNAC 2 cut(s) 268, 715
MalI GATC 6 cut(s) 235, 399, 777, 914, 984, 1209
MboI GATC 6 cut(s) 233, 397, 775, 912, 982, 1207
MfeI CAATTG 1 cut(s) 866
MflI RGATCY 1 cut(s) 982
MhlI GDGCHC 1 cut(s) 1005
MluCI AATT 5 cut(s) 439, 468, 721, 866, 1132
MluI ACGCGT 1 cut(s) 169
MlyI GAGTC 3 cut(s) 759, 1036, 1097
MmeI TCCRAC 2 cut(s) 995, 1071
MroI TCCGGA 1 cut(s) 42
MroNI GCCGGC 1 cut(s) 519
MseI TTAA 2 cut(s) 411, 1294
MslI CAYNNNNRTG 2 cut(s) 582, 1034
MspA1I CMGCKG 2 cut(s) 671, 1157
MspI CCGG 6 cut(s) 43, 116, 288, 292, 520, 1100
MspR9I CCNGG 4 cut(s) 140, 274, 493, 987
MunI CAATTG 1 cut(s) 866
MvaI CCWGG 4 cut(s) 140, 274, 493, 987
MvnI CGCG 1 cut(s) 171
NaeI GCCGGC 1 cut(s) 521
NdeI CATATG 1 cut(s) 676
NdeII GATC 6 cut(s) 233, 397, 775, 912, 982, 1207
NgoMIV GCCGGC 1 cut(s) 519
NlaIII CATG 2 cut(s) 327, 995
NlaIV GGNNCC 4 cut(s) 361, 423, 984, 1059
NmuCI GTSAC 2 cut(s) 268, 715
NspV TTCGAA 2 cut(s) 175, 1125
PciSI GCTCTTC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 521
PfeI GAWTC 5 cut(s) 121, 148, 603, 785, 1187
Pfl23II CGTACG 1 cut(s) 393
PflFI GACNNNGTC 1 cut(s) 749
PflMI CCANNNNNTGG 1 cut(s) 772
PleI GAGTC 3 cut(s) 758, 1036, 1097
PpsI GAGTC 3 cut(s) 758, 1036, 1097
Ppu21I YACGTR 1 cut(s) 393
PpuMI RGGWCCY 1 cut(s) 54
PsiI TTATAA 1 cut(s) 648
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 4 cut(s) 138, 272, 491, 985
PspEI GGTNACC 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 4 cut(s) 138, 272, 491, 985
PspLI CGTACG 1 cut(s) 393
PspN4I GGNNCC 4 cut(s) 361, 423, 984, 1059
PspPI GGNCC 6 cut(s) 54, 113, 285, 360, 422, 824
PspPPI RGGWCCY 1 cut(s) 54
PsrI GAACNNNNNNTAC 2 cut(s) 634, 666
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 1 cut(s) 982
PsyI GACNNNGTC 1 cut(s) 749
PvuII CAGCTG 2 cut(s) 671, 1157
RsaI GTAC 4 cut(s) 395, 557, 698, 964
RsaNI GTAC 4 cut(s) 394, 556, 697, 963
RseI CAYNNNNRTG 2 cut(s) 582, 1034
SapI GCTCTTC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 411, 1294
Sau3AI GATC 6 cut(s) 233, 397, 775, 912, 982, 1207
Sau96I GGNCC 6 cut(s) 54, 113, 285, 360, 422, 824
SchI GAGTC 3 cut(s) 759, 1036, 1097
ScrFI CCNGG 4 cut(s) 140, 274, 493, 987
SduI GDGCHC 1 cut(s) 1005
SfaNI GCATC 4 cut(s) 370, 518, 583, 960
SfuI TTCGAA 2 cut(s) 175, 1125
SinI GGWCC 3 cut(s) 54, 285, 824
SmiMI CAYNNNNRTG 2 cut(s) 582, 1034
SnaBI TACGTA 1 cut(s) 393
Sse9I AATT 5 cut(s) 439, 468, 721, 866, 1132
SsiI CCGC 8 cut(s) 192, 446, 686, 800, 875, 920, 1055, 1193
SspI AATATT 1 cut(s) 416
SspMI CTAG 4 cut(s) 60, 401, 449, 506
StyD4I CCNGG 4 cut(s) 138, 272, 491, 985
TaaI ACNGT 1 cut(s) 560
TaiI ACGT 3 cut(s) 138, 395, 1227
TaqI TCGA 7 cut(s) 175, 539, 815, 849, 954, 1110, 1125
TasI AATT 5 cut(s) 439, 468, 721, 866, 1132
TatI WGTACW 2 cut(s) 696, 962
TauI GCSGC 2 cut(s) 689, 922
TfiI GAWTC 5 cut(s) 121, 148, 603, 785, 1187
Tru1I TTAA 2 cut(s) 411, 1294
Tru9I TTAA 2 cut(s) 411, 1294
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 2 cut(s) 268, 715
Tsp45I GTSAC 2 cut(s) 268, 715
TspDTI ATGAA 4 cut(s) 62, 312, 917, 1254
TspRI CASTG 1 cut(s) 720
Tth111I GACNNNGTC 1 cut(s) 749
Van91I CCANNNNNTGG 1 cut(s) 772
VpaK11BI GGWCC 3 cut(s) 54, 285, 824
XapI RAATTY 1 cut(s) 1132
XmiI GTMKAC 2 cut(s) 1221, 1253
XspI CTAG 4 cut(s) 60, 401, 449, 506
ZraI GACGTC 1 cut(s) 1225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.