Prupe.2G060200_v2.0.a1

transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
7609098 .. 7614809
5712 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G060200.1

Sequence Viewer

Length: 1200 bp
ATGAAGAGGTCACCTAGTTCTTGTTGCTCTTCTTCTTCCTCTTCTTCATCTTCATTTGCAGGGCCTGAAACTCCCCATCTGAACCAGGCAGAGAATCAGAAGCCCAAGGCCAAGCGGATTAGAAAAAACCAGAGCAACCCAACAGAGAAATGCCAAAATGGCACCAACCCAAACACAGGAGGGGGCAGAAGAAGCTCCATTTACAGAGGGGTCACCAGGCATAGATGGACTGGAAGATTTGAAGCTCATCTCTGGGATAAGAGCTCATGGAACAACATTCAGAACAAAAAAGGACGACAAGTTTATTTGGGGGCCTACGATAGTGAGGAGGCTGCTGCTCATACCTACGATCTTGCTGCCCTTAAGTATTGGGGCCCCGGGACAACCCTGAATTTCCCGATAGAAACGTACACAAAGGAGCTTGAAGAAATGCAGAAGGCCTCCCGGGAAGAATACCTAGCCTCATTGCGTCGCCGGAGCAGTGGATTTTCTAGAGGCGTTTCGAAGTACCGCGGCGTGGCTAGGCATCATCATAATGGAAGATGGGAGGCCAGAATTGGAAGAGTTTTTGGAAACAAGTATTTATACCTTGGAACTTATAATACACAAGAGGAGGCAGCAGCAGCATATGACATGGCAGCAATAGAGTACAGAGGAGCAAATGCAGTGACCAATTTTGATATCAACAACTACATTGACAAATTCAAGAAAGAGTCGGAAGAAACTCCTCCCAAATGCTTCGATGCTGGACTACCGGAAGATGAAAAAGTAAAGCACAAAGTGCAACAACTACAACCACAACAGCAGCAACAACAAGAACAACAAGAAGAACAAATTGTCTCAACCCAACCTCAGTATCCACATCTTCTGCATTGCATAGAAAGTAATACAATGGACCAAGTCATGGATGCTGCAGATGAACACAAGTTCACTTGGAACTTTTTGGACACAGGATTGATGGCTCAACTTCCAGTTCCTGACATCCCTCTGGATAACAAGCCCTTAGAGTTACCAGACCTGTTTGAGGACTTGGGCTTTGAAGAAAATTTTGACTTGATATTTGGGGCAGCAGGTGATGCTGATTTGGGTGGCTTAATGGAATCTGCAGGTTGTGGGGTTGATGTGGGTGTCCCAAGAAACTTGGAGGATAATGGGCCATCTTCTTCCCCTTCTTCAACAACCACCTCTATTTCTTTTTAA

Protein Analysis

400

Amino Acids

44.75

Weight (kDa)

5.83

Isoelectric Point (pI)

58.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
AarI CACCTGC 1 cut(s) 1061
Acc36I ACCTGC 2 cut(s) 1061, 1097
AccB1I GGYRCC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 904
AccII CGCG 1 cut(s) 513
AciI CCGC 3 cut(s) 115, 511, 513
AcsI RAATTY 3 cut(s) 391, 701, 1045
AdeI CACNNNGTG 1 cut(s) 781
AfaI GTAC 3 cut(s) 410, 509, 650
AfiI CCNNNNNNNGG 4 cut(s) 176, 517, 904, 1024
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 5 cut(s) 242, 425, 706, 1040, 1176
AjnI CCWGG 2 cut(s) 84, 215
AluBI AGCT 4 cut(s) 195, 245, 264, 421
AluI AGCT 4 cut(s) 195, 245, 264, 421
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 844
AlwNI CAGNNNCTG 2 cut(s) 65, 977
Ama87I CYCGRG 2 cut(s) 377, 444
AoxI GGCC 7 cut(s) 62, 108, 312, 373, 438, 549, 1154
ApaI GGGCCC 1 cut(s) 377
ApoI RAATTY 3 cut(s) 391, 701, 1045
ArsI GACNNNNNNTTYG 4 cut(s) 1019, 1043, 1051, 1075
AspS9I GGNCC 6 cut(s) 62, 312, 373, 374, 895, 1154
AsuC2I CCSGG 4 cut(s) 378, 379, 445, 446
AsuHPI GGTGA 3 cut(s) 3, 205, 1085
AsuII TTCGAA 1 cut(s) 503
AvaI CYCGRG 2 cut(s) 377, 444
AvaII GGWCC 1 cut(s) 895
BaeGI GKGCMC 1 cut(s) 377
BaeI ACNNNNGTAYC 2 cut(s) 839, 872
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 2 cut(s) 266, 377
Bbv12I GWGCWC 1 cut(s) 266
BccI CCATC 5 cut(s) 84, 219, 537, 952, 1165
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 2 cut(s) 86, 217
BciVI GTATCC 1 cut(s) 867
BcnI CCSGG 4 cut(s) 378, 379, 445, 446
BcoDI GTCTC 1 cut(s) 844
BfaI CTAG 4 cut(s) 15, 458, 492, 522
BfmI CTRYAG 2 cut(s) 912, 1104
BfrI CTTAAG 1 cut(s) 362
BfuAI ACCTGC 2 cut(s) 1061, 1097
BfuI GTATCC 1 cut(s) 867
BglI GCCNNNNNGGC 1 cut(s) 159
Bme1390I CCNGG 6 cut(s) 86, 217, 378, 379, 445, 446
Bme18I GGWCC 1 cut(s) 895
BmeT110I CYCGRG 2 cut(s) 377, 444
BmgT120I GGNCC 6 cut(s) 62, 312, 373, 374, 895, 1154
BmiI GGNNCC 5 cut(s) 163, 313, 374, 375, 376
BmrFI CCNGG 6 cut(s) 86, 217, 378, 379, 445, 446
BmsI GCATC 4 cut(s) 535, 733, 898, 1066
Bpu14I TTCGAA 1 cut(s) 503
BpuMI CCSGG 4 cut(s) 378, 379, 445, 446
BsaJI CCNNGG 6 cut(s) 105, 376, 377, 444, 511, 589
BsaWI WCCGGW 1 cut(s) 754
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 517, 904, 1024
Bse1I ACTGG 2 cut(s) 235, 971
Bse3DI GCAATG 2 cut(s) 464, 871
BseBI CCWGG 2 cut(s) 86, 217
BseDI CCNNGG 6 cut(s) 105, 376, 377, 444, 511, 589
BseGI GGATG 2 cut(s) 913, 981
BseLI CCNNNNNNNGG 4 cut(s) 176, 517, 904, 1024
BseMI GCAATG 2 cut(s) 464, 871
BseMII CTCAG 1 cut(s) 866
BseNI ACTGG 2 cut(s) 235, 971
BseRI GAGGAG 4 cut(s) 341, 626, 669, 717
BseSI GKGCMC 1 cut(s) 377
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 7 cut(s) 64, 110, 314, 375, 440, 551, 1156
BshNI GGYRCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 266
BsiHKCI CYCGRG 2 cut(s) 377, 444
BsiSI CCGG 4 cut(s) 378, 445, 475, 755
BslFI GGGAC 2 cut(s) 394, 1115
BslI CCNNNNNNNGG 4 cut(s) 176, 517, 904, 1024
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 2 cut(s) 394, 1115
BsnI GGCC 7 cut(s) 64, 110, 314, 375, 440, 551, 1156
BsoBI CYCGRG 2 cut(s) 377, 444
Bsp119I TTCGAA 1 cut(s) 503
Bsp120I GGGCCC 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 266, 377
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 3 cut(s) 115, 511, 513
BspANI GGCC 7 cut(s) 64, 110, 314, 375, 440, 551, 1156
BspCNI CTCAG 1 cut(s) 865
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 5 cut(s) 163, 313, 374, 375, 376
BspMAI CTGCAG 2 cut(s) 916, 1108
BspMI ACCTGC 2 cut(s) 1061, 1097
BspQI GCTCTTC 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 161
BspTI CTTAAG 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 464, 871
BsrI ACTGG 2 cut(s) 235, 971
BssECI CCNNGG 6 cut(s) 105, 376, 377, 444, 511, 589
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 2 cut(s) 105, 589
Bst2UI CCWGG 2 cut(s) 86, 217
Bst6I CTCTTC 3 cut(s) 34, 46, 556
BstAFI CTTAAG 1 cut(s) 362
BstAPI GCANNNNNTGC 2 cut(s) 781, 1076
BstBI TTCGAA 1 cut(s) 503
BstDEI CTNAG 2 cut(s) 852, 1003
BstDSI CCRYGG 1 cut(s) 511
BstEII GGTNACC 2 cut(s) 9, 211
BstENI CCTNNNNNAGG 1 cut(s) 1022
BstF5I GGATG 2 cut(s) 913, 981
BstFNI CGCG 1 cut(s) 513
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 5 cut(s) 159, 192, 623, 781, 1076
BstNI CCWGG 2 cut(s) 86, 217
BstPI GGTNACC 2 cut(s) 9, 211
BstSCI CCNGG 6 cut(s) 84, 215, 376, 377, 443, 444
BstSFI CTRYAG 2 cut(s) 912, 1104
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 1 cut(s) 513
BsuI GTATCC 1 cut(s) 867
BsuRI GGCC 7 cut(s) 64, 110, 314, 375, 440, 551, 1156
BtgI CCRYGG 1 cut(s) 511
BtsCI GGATG 2 cut(s) 913, 981
BtsI GCAGTG 2 cut(s) 487, 672
BtsIMutI CAGTG 2 cut(s) 487, 672
BveI ACCTGC 2 cut(s) 1061, 1097
CaiI CAGNNNCTG 2 cut(s) 65, 977
Cfr13I GGNCC 6 cut(s) 62, 312, 373, 374, 895, 1154
Cfr42I CCGCGG 1 cut(s) 514
Cfr9I CCCGGG 2 cut(s) 377, 444
CseI GACGC 1 cut(s) 458
Csp6I GTAC 3 cut(s) 409, 508, 649
CviAII CATG 3 cut(s) 267, 634, 904
CviQI GTAC 3 cut(s) 409, 508, 649
DdeI CTNAG 2 cut(s) 852, 1003
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DraIII CACNNNGTG 1 cut(s) 781
Eam1104I CTCTTC 3 cut(s) 34, 46, 556
EarI CTCTTC 3 cut(s) 34, 46, 556
Ecl136II GAGCTC 1 cut(s) 264
Eco130I CCWWGG 2 cut(s) 105, 589
Eco147I AGGCCT 1 cut(s) 440
Eco24I GRGCYC 2 cut(s) 266, 377
Eco32I GATATC 1 cut(s) 682
Eco47I GGWCC 1 cut(s) 895
Eco53kI GAGCTC 1 cut(s) 264
Eco88I CYCGRG 2 cut(s) 377, 444
Eco91I GGTNACC 2 cut(s) 9, 211
EcoICRI GAGCTC 1 cut(s) 264
EcoNI CCTNNNNNAGG 1 cut(s) 1022
EcoO109I RGGNCCY 4 cut(s) 62, 312, 373, 374
EcoO65I GGTNACC 2 cut(s) 9, 211
EcoRII CCWGG 2 cut(s) 84, 215
EcoRV GATATC 1 cut(s) 682
EcoT14I CCWWGG 2 cut(s) 105, 589
EcoT38I GRGCYC 2 cut(s) 266, 377
ErhI CCWWGG 2 cut(s) 105, 589
FaeI CATG 3 cut(s) 270, 637, 907
FaqI GGGAC 2 cut(s) 394, 1115
FatI CATG 3 cut(s) 266, 633, 903
FauNDI CATATG 1 cut(s) 628
FokI GGATG 2 cut(s) 920, 968
FriOI GRGCYC 2 cut(s) 266, 377
FspBI CTAG 4 cut(s) 15, 458, 492, 522
HaeIII GGCC 7 cut(s) 64, 110, 314, 375, 440, 551, 1156
HapII CCGG 4 cut(s) 378, 445, 475, 755
HgaI GACGC 1 cut(s) 458
Hin1II CATG 3 cut(s) 270, 637, 907
HinfI GANTC 3 cut(s) 94, 713, 1100
HpaII CCGG 4 cut(s) 378, 445, 475, 755
HphI GGTGA 3 cut(s) 3, 205, 1085
Hpy166II GTNNAC 2 cut(s) 411, 930
Hpy188I TCNGA 4 cut(s) 81, 99, 282, 718
Hpy188III TCNNGA 5 cut(s) 397, 492, 706, 977, 989
Hpy8I GTNNAC 2 cut(s) 411, 930
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 2 cut(s) 430, 1179
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 8 cut(s) 59, 433, 665, 784, 871, 876, 914, 1106
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 192, 623, 781, 1076
HpyF3I CTNAG 2 cut(s) 852, 1003
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 3 cut(s) 270, 637, 907
KspI CCGCGG 1 cut(s) 514
Kzo9I GATC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 34
LmnI GCTCC 4 cut(s) 200, 418, 477, 656
LweI GCATC 4 cut(s) 535, 733, 898, 1066
MaeI CTAG 4 cut(s) 15, 458, 492, 522
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 4 cut(s) 9, 211, 667, 1008
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 266, 377
MluCI AATT 6 cut(s) 391, 555, 673, 701, 834, 1045
MlyI GAGTC 1 cut(s) 722
MmeI TCCRAC 1 cut(s) 696
MseI TTAA 3 cut(s) 363, 1094, 1198
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 513
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 4 cut(s) 378, 445, 475, 755
MspR9I CCNGG 6 cut(s) 86, 217, 378, 379, 445, 446
MvaI CCWGG 2 cut(s) 86, 217
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 5 cut(s) 159, 192, 623, 781, 1076
NciI CCSGG 4 cut(s) 378, 379, 445, 446
NdeI CATATG 1 cut(s) 628
NdeII GATC 1 cut(s) 349
NlaIII CATG 3 cut(s) 270, 637, 907
NlaIV GGNNCC 5 cut(s) 163, 313, 374, 375, 376
NmuCI GTSAC 3 cut(s) 9, 211, 667
NspV TTCGAA 1 cut(s) 503
PaqCI CACCTGC 1 cut(s) 1061
PceI AGGCCT 1 cut(s) 440
PciSI GCTCTTC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 94, 1100
PflFI GACNNNGTC 1 cut(s) 899
PflMI CCANNNNNTGG 1 cut(s) 904
PleI GAGTC 1 cut(s) 721
PpsI GAGTC 1 cut(s) 721
PsiI TTATAA 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 84, 215
PspEI GGTNACC 2 cut(s) 9, 211
PspGI CCWGG 2 cut(s) 84, 215
PspN4I GGNNCC 5 cut(s) 163, 313, 374, 375, 376
PspOMI GGGCCC 1 cut(s) 373
PspPI GGNCC 6 cut(s) 62, 312, 373, 374, 895, 1154
PsrI GAACNNNNNNTAC 2 cut(s) 586, 618
PstI CTGCAG 2 cut(s) 916, 1108
PstNI CAGNNNCTG 2 cut(s) 65, 977
PsyI GACNNNGTC 1 cut(s) 899
RsaI GTAC 3 cut(s) 410, 509, 650
RsaNI GTAC 3 cut(s) 409, 508, 649
RseI CAYNNNNRTG 1 cut(s) 534
SacI GAGCTC 1 cut(s) 266
SacII CCGCGG 1 cut(s) 514
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 3 cut(s) 363, 1094, 1198
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 6 cut(s) 62, 312, 373, 374, 895, 1154
SchI GAGTC 1 cut(s) 722
ScrFI CCNGG 6 cut(s) 86, 217, 378, 379, 445, 446
SduI GDGCHC 2 cut(s) 266, 377
SfaNI GCATC 4 cut(s) 535, 733, 898, 1066
SfcI CTRYAG 2 cut(s) 912, 1104
Sfr303I CCGCGG 1 cut(s) 514
SfuI TTCGAA 1 cut(s) 503
SgrBI CCGCGG 1 cut(s) 514
SinI GGWCC 1 cut(s) 895
SmaI CCCGGG 2 cut(s) 379, 446
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 6 cut(s) 391, 555, 673, 701, 834, 1045
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 3 cut(s) 115, 511, 513
SspMI CTAG 4 cut(s) 15, 458, 492, 522
SstI GAGCTC 1 cut(s) 266
StuI AGGCCT 1 cut(s) 440
StyD4I CCNGG 6 cut(s) 84, 215, 376, 377, 443, 444
StyI CCWWGG 2 cut(s) 105, 589
TaiI ACGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 503, 741
TasI AATT 6 cut(s) 391, 555, 673, 701, 834, 1045
TatI WGTACW 1 cut(s) 648
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 2 cut(s) 94, 1100
Tru1I TTAA 3 cut(s) 363, 1094, 1198
Tru9I TTAA 3 cut(s) 363, 1094, 1198
TscAI CASTG 2 cut(s) 487, 672
TseFI GTSAC 3 cut(s) 9, 211, 667
Tsp45I GTSAC 3 cut(s) 9, 211, 667
TspDTI ATGAA 5 cut(s) 17, 36, 42, 777, 933
TspMI CCCGGG 2 cut(s) 377, 444
TspRI CASTG 2 cut(s) 487, 672
Tth111I GACNNNGTC 1 cut(s) 899
Van91I CCANNNNNTGG 1 cut(s) 904
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 895
XagI CCTNNNNNAGG 1 cut(s) 1022
XapI RAATTY 3 cut(s) 391, 701, 1045
XbaI TCTAGA 1 cut(s) 491
XmaI CCCGGG 2 cut(s) 377, 444
XspI CTAG 4 cut(s) 15, 458, 492, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.