transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320 |
| fragaria_vesca | FvH4_7g04950 FvH4_7g04950 FvH4_7g04950 |
| malus_domestica | MD02G1265300.v1.1 MD07G1054100.v1.1 |
| prunus_persica | Prupe.2G060200_v2.0.a1 |
| pyrus_communis | pycom02g22670 pycom07g04190 |
| rosa_chinensis | RchiOBHm_Chr1g0331141 |
| rosa_laevigata | RLG00000029750 |
| rosa_multiflora | Rmu_sc0006123.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00319410 |
| rosa_rugosa | Rorug01G0091800 |
| rosa_samantha | Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400 |
| rosa_wichuraiana | Rw1G009290 Rw3G018400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 600 |
| AarI | CACCTGC | 1 cut(s) | 1061 |
| Acc36I | ACCTGC | 2 cut(s) | 1061, 1097 |
| AccB1I | GGYRCC | 1 cut(s) | 161 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 904 |
| AccII | CGCG | 1 cut(s) | 513 |
| AciI | CCGC | 3 cut(s) | 115, 511, 513 |
| AcsI | RAATTY | 3 cut(s) | 391, 701, 1045 |
| AdeI | CACNNNGTG | 1 cut(s) | 781 |
| AfaI | GTAC | 3 cut(s) | 410, 509, 650 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 176, 517, 904, 1024 |
| AflII | CTTAAG | 1 cut(s) | 362 |
| AgsI | TTSAA | 5 cut(s) | 242, 425, 706, 1040, 1176 |
| AjnI | CCWGG | 2 cut(s) | 84, 215 |
| AluBI | AGCT | 4 cut(s) | 195, 245, 264, 421 |
| AluI | AGCT | 4 cut(s) | 195, 245, 264, 421 |
| Alw21I | GWGCWC | 1 cut(s) | 266 |
| Alw26I | GTCTC | 1 cut(s) | 844 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 65, 977 |
| Ama87I | CYCGRG | 2 cut(s) | 377, 444 |
| AoxI | GGCC | 7 cut(s) | 62, 108, 312, 373, 438, 549, 1154 |
| ApaI | GGGCCC | 1 cut(s) | 377 |
| ApoI | RAATTY | 3 cut(s) | 391, 701, 1045 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1019, 1043, 1051, 1075 |
| AspS9I | GGNCC | 6 cut(s) | 62, 312, 373, 374, 895, 1154 |
| AsuC2I | CCSGG | 4 cut(s) | 378, 379, 445, 446 |
| AsuHPI | GGTGA | 3 cut(s) | 3, 205, 1085 |
| AsuII | TTCGAA | 1 cut(s) | 503 |
| AvaI | CYCGRG | 2 cut(s) | 377, 444 |
| AvaII | GGWCC | 1 cut(s) | 895 |
| BaeGI | GKGCMC | 1 cut(s) | 377 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 839, 872 |
| BanI | GGYRCC | 1 cut(s) | 161 |
| BanII | GRGCYC | 2 cut(s) | 266, 377 |
| Bbv12I | GWGCWC | 1 cut(s) | 266 |
| BccI | CCATC | 5 cut(s) | 84, 219, 537, 952, 1165 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 338, 372 |
| BciT130I | CCWGG | 2 cut(s) | 86, 217 |
| BciVI | GTATCC | 1 cut(s) | 867 |
| BcnI | CCSGG | 4 cut(s) | 378, 379, 445, 446 |
| BcoDI | GTCTC | 1 cut(s) | 844 |
| BfaI | CTAG | 4 cut(s) | 15, 458, 492, 522 |
| BfmI | CTRYAG | 2 cut(s) | 912, 1104 |
| BfrI | CTTAAG | 1 cut(s) | 362 |
| BfuAI | ACCTGC | 2 cut(s) | 1061, 1097 |
| BfuI | GTATCC | 1 cut(s) | 867 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 159 |
| Bme1390I | CCNGG | 6 cut(s) | 86, 217, 378, 379, 445, 446 |
| Bme18I | GGWCC | 1 cut(s) | 895 |
| BmeT110I | CYCGRG | 2 cut(s) | 377, 444 |
| BmgT120I | GGNCC | 6 cut(s) | 62, 312, 373, 374, 895, 1154 |
| BmiI | GGNNCC | 5 cut(s) | 163, 313, 374, 375, 376 |
| BmrFI | CCNGG | 6 cut(s) | 86, 217, 378, 379, 445, 446 |
| BmsI | GCATC | 4 cut(s) | 535, 733, 898, 1066 |
| Bpu14I | TTCGAA | 1 cut(s) | 503 |
| BpuMI | CCSGG | 4 cut(s) | 378, 379, 445, 446 |
| BsaJI | CCNNGG | 6 cut(s) | 105, 376, 377, 444, 511, 589 |
| BsaWI | WCCGGW | 1 cut(s) | 754 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 176, 517, 904, 1024 |
| Bse1I | ACTGG | 2 cut(s) | 235, 971 |
| Bse3DI | GCAATG | 2 cut(s) | 464, 871 |
| BseBI | CCWGG | 2 cut(s) | 86, 217 |
| BseDI | CCNNGG | 6 cut(s) | 105, 376, 377, 444, 511, 589 |
| BseGI | GGATG | 2 cut(s) | 913, 981 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 176, 517, 904, 1024 |
| BseMI | GCAATG | 2 cut(s) | 464, 871 |
| BseMII | CTCAG | 1 cut(s) | 866 |
| BseNI | ACTGG | 2 cut(s) | 235, 971 |
| BseRI | GAGGAG | 4 cut(s) | 341, 626, 669, 717 |
| BseSI | GKGCMC | 1 cut(s) | 377 |
| Bsh1236I | CGCG | 1 cut(s) | 513 |
| BshFI | GGCC | 7 cut(s) | 64, 110, 314, 375, 440, 551, 1156 |
| BshNI | GGYRCC | 1 cut(s) | 161 |
| BsiHKAI | GWGCWC | 1 cut(s) | 266 |
| BsiHKCI | CYCGRG | 2 cut(s) | 377, 444 |
| BsiSI | CCGG | 4 cut(s) | 378, 445, 475, 755 |
| BslFI | GGGAC | 2 cut(s) | 394, 1115 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 176, 517, 904, 1024 |
| BsmAI | GTCTC | 1 cut(s) | 844 |
| BsmFI | GGGAC | 2 cut(s) | 394, 1115 |
| BsnI | GGCC | 7 cut(s) | 64, 110, 314, 375, 440, 551, 1156 |
| BsoBI | CYCGRG | 2 cut(s) | 377, 444 |
| Bsp119I | TTCGAA | 1 cut(s) | 503 |
| Bsp120I | GGGCCC | 1 cut(s) | 373 |
| Bsp1286I | GDGCHC | 2 cut(s) | 266, 377 |
| Bsp143I | GATC | 1 cut(s) | 349 |
| BspACI | CCGC | 3 cut(s) | 115, 511, 513 |
| BspANI | GGCC | 7 cut(s) | 64, 110, 314, 375, 440, 551, 1156 |
| BspCNI | CTCAG | 1 cut(s) | 865 |
| BspFNI | CGCG | 1 cut(s) | 513 |
| BspLI | GGNNCC | 5 cut(s) | 163, 313, 374, 375, 376 |
| BspMAI | CTGCAG | 2 cut(s) | 916, 1108 |
| BspMI | ACCTGC | 2 cut(s) | 1061, 1097 |
| BspQI | GCTCTTC | 1 cut(s) | 34 |
| BspT104I | TTCGAA | 1 cut(s) | 503 |
| BspT107I | GGYRCC | 1 cut(s) | 161 |
| BspTI | CTTAAG | 1 cut(s) | 362 |
| BsrDI | GCAATG | 2 cut(s) | 464, 871 |
| BsrI | ACTGG | 2 cut(s) | 235, 971 |
| BssECI | CCNNGG | 6 cut(s) | 105, 376, 377, 444, 511, 589 |
| BssMI | GATC | 1 cut(s) | 349 |
| BssT1I | CCWWGG | 2 cut(s) | 105, 589 |
| Bst2UI | CCWGG | 2 cut(s) | 86, 217 |
| Bst6I | CTCTTC | 3 cut(s) | 34, 46, 556 |
| BstAFI | CTTAAG | 1 cut(s) | 362 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 781, 1076 |
| BstBI | TTCGAA | 1 cut(s) | 503 |
| BstDEI | CTNAG | 2 cut(s) | 852, 1003 |
| BstDSI | CCRYGG | 1 cut(s) | 511 |
| BstEII | GGTNACC | 2 cut(s) | 9, 211 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1022 |
| BstF5I | GGATG | 2 cut(s) | 913, 981 |
| BstFNI | CGCG | 1 cut(s) | 513 |
| BstKTI | GATC | 1 cut(s) | 352 |
| BstMAI | GTCTC | 1 cut(s) | 844 |
| BstMBI | GATC | 1 cut(s) | 349 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 159, 192, 623, 781, 1076 |
| BstNI | CCWGG | 2 cut(s) | 86, 217 |
| BstPI | GGTNACC | 2 cut(s) | 9, 211 |
| BstSCI | CCNGG | 6 cut(s) | 84, 215, 376, 377, 443, 444 |
| BstSFI | CTRYAG | 2 cut(s) | 912, 1104 |
| BstSLI | GKGCMC | 1 cut(s) | 377 |
| BstUI | CGCG | 1 cut(s) | 513 |
| BsuI | GTATCC | 1 cut(s) | 867 |
| BsuRI | GGCC | 7 cut(s) | 64, 110, 314, 375, 440, 551, 1156 |
| BtgI | CCRYGG | 1 cut(s) | 511 |
| BtsCI | GGATG | 2 cut(s) | 913, 981 |
| BtsI | GCAGTG | 2 cut(s) | 487, 672 |
| BtsIMutI | CAGTG | 2 cut(s) | 487, 672 |
| BveI | ACCTGC | 2 cut(s) | 1061, 1097 |
| CaiI | CAGNNNCTG | 2 cut(s) | 65, 977 |
| Cfr13I | GGNCC | 6 cut(s) | 62, 312, 373, 374, 895, 1154 |
| Cfr42I | CCGCGG | 1 cut(s) | 514 |
| Cfr9I | CCCGGG | 2 cut(s) | 377, 444 |
| CseI | GACGC | 1 cut(s) | 458 |
| Csp6I | GTAC | 3 cut(s) | 409, 508, 649 |
| CviAII | CATG | 3 cut(s) | 267, 634, 904 |
| CviQI | GTAC | 3 cut(s) | 409, 508, 649 |
| DdeI | CTNAG | 2 cut(s) | 852, 1003 |
| DpnI | GATC | 1 cut(s) | 351 |
| DpnII | GATC | 1 cut(s) | 349 |
| DraIII | CACNNNGTG | 1 cut(s) | 781 |
| Eam1104I | CTCTTC | 3 cut(s) | 34, 46, 556 |
| EarI | CTCTTC | 3 cut(s) | 34, 46, 556 |
| Ecl136II | GAGCTC | 1 cut(s) | 264 |
| Eco130I | CCWWGG | 2 cut(s) | 105, 589 |
| Eco147I | AGGCCT | 1 cut(s) | 440 |
| Eco24I | GRGCYC | 2 cut(s) | 266, 377 |
| Eco32I | GATATC | 1 cut(s) | 682 |
| Eco47I | GGWCC | 1 cut(s) | 895 |
| Eco53kI | GAGCTC | 1 cut(s) | 264 |
| Eco88I | CYCGRG | 2 cut(s) | 377, 444 |
| Eco91I | GGTNACC | 2 cut(s) | 9, 211 |
| EcoICRI | GAGCTC | 1 cut(s) | 264 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1022 |
| EcoO109I | RGGNCCY | 4 cut(s) | 62, 312, 373, 374 |
| EcoO65I | GGTNACC | 2 cut(s) | 9, 211 |
| EcoRII | CCWGG | 2 cut(s) | 84, 215 |
| EcoRV | GATATC | 1 cut(s) | 682 |
| EcoT14I | CCWWGG | 2 cut(s) | 105, 589 |
| EcoT38I | GRGCYC | 2 cut(s) | 266, 377 |
| ErhI | CCWWGG | 2 cut(s) | 105, 589 |
| FaeI | CATG | 3 cut(s) | 270, 637, 907 |
| FaqI | GGGAC | 2 cut(s) | 394, 1115 |
| FatI | CATG | 3 cut(s) | 266, 633, 903 |
| FauNDI | CATATG | 1 cut(s) | 628 |
| FokI | GGATG | 2 cut(s) | 920, 968 |
| FriOI | GRGCYC | 2 cut(s) | 266, 377 |
| FspBI | CTAG | 4 cut(s) | 15, 458, 492, 522 |
| HaeIII | GGCC | 7 cut(s) | 64, 110, 314, 375, 440, 551, 1156 |
| HapII | CCGG | 4 cut(s) | 378, 445, 475, 755 |
| HgaI | GACGC | 1 cut(s) | 458 |
| Hin1II | CATG | 3 cut(s) | 270, 637, 907 |
| HinfI | GANTC | 3 cut(s) | 94, 713, 1100 |
| HpaII | CCGG | 4 cut(s) | 378, 445, 475, 755 |
| HphI | GGTGA | 3 cut(s) | 3, 205, 1085 |
| Hpy166II | GTNNAC | 2 cut(s) | 411, 930 |
| Hpy188I | TCNGA | 4 cut(s) | 81, 99, 282, 718 |
| Hpy188III | TCNNGA | 5 cut(s) | 397, 492, 706, 977, 989 |
| Hpy8I | GTNNAC | 2 cut(s) | 411, 930 |
| Hpy99I | CGWCG | 1 cut(s) | 474 |
| HpyAV | CCTTC | 2 cut(s) | 430, 1179 |
| HpyCH4IV | ACGT | 1 cut(s) | 407 |
| HpyCH4V | TGCA | 8 cut(s) | 59, 433, 665, 784, 871, 876, 914, 1106 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 159, 192, 623, 781, 1076 |
| HpyF3I | CTNAG | 2 cut(s) | 852, 1003 |
| HpySE526I | ACGT | 1 cut(s) | 407 |
| Hsp92II | CATG | 3 cut(s) | 270, 637, 907 |
| KspI | CCGCGG | 1 cut(s) | 514 |
| Kzo9I | GATC | 1 cut(s) | 349 |
| LguI | GCTCTTC | 1 cut(s) | 34 |
| LmnI | GCTCC | 4 cut(s) | 200, 418, 477, 656 |
| LweI | GCATC | 4 cut(s) | 535, 733, 898, 1066 |
| MaeI | CTAG | 4 cut(s) | 15, 458, 492, 522 |
| MaeII | ACGT | 1 cut(s) | 407 |
| MaeIII | GTNAC | 4 cut(s) | 9, 211, 667, 1008 |
| MalI | GATC | 1 cut(s) | 351 |
| MboI | GATC | 1 cut(s) | 349 |
| MhlI | GDGCHC | 2 cut(s) | 266, 377 |
| MluCI | AATT | 6 cut(s) | 391, 555, 673, 701, 834, 1045 |
| MlyI | GAGTC | 1 cut(s) | 722 |
| MmeI | TCCRAC | 1 cut(s) | 696 |
| MseI | TTAA | 3 cut(s) | 363, 1094, 1198 |
| MslI | CAYNNNNRTG | 1 cut(s) | 534 |
| MspA1I | CMGCKG | 1 cut(s) | 513 |
| MspCI | CTTAAG | 1 cut(s) | 362 |
| MspI | CCGG | 4 cut(s) | 378, 445, 475, 755 |
| MspR9I | CCNGG | 6 cut(s) | 86, 217, 378, 379, 445, 446 |
| MvaI | CCWGG | 2 cut(s) | 86, 217 |
| MvnI | CGCG | 1 cut(s) | 513 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 159, 192, 623, 781, 1076 |
| NciI | CCSGG | 4 cut(s) | 378, 379, 445, 446 |
| NdeI | CATATG | 1 cut(s) | 628 |
| NdeII | GATC | 1 cut(s) | 349 |
| NlaIII | CATG | 3 cut(s) | 270, 637, 907 |
| NlaIV | GGNNCC | 5 cut(s) | 163, 313, 374, 375, 376 |
| NmuCI | GTSAC | 3 cut(s) | 9, 211, 667 |
| NspV | TTCGAA | 1 cut(s) | 503 |
| PaqCI | CACCTGC | 1 cut(s) | 1061 |
| PceI | AGGCCT | 1 cut(s) | 440 |
| PciSI | GCTCTTC | 1 cut(s) | 34 |
| PfeI | GAWTC | 2 cut(s) | 94, 1100 |
| PflFI | GACNNNGTC | 1 cut(s) | 899 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 904 |
| PleI | GAGTC | 1 cut(s) | 721 |
| PpsI | GAGTC | 1 cut(s) | 721 |
| PsiI | TTATAA | 1 cut(s) | 600 |
| Psp124BI | GAGCTC | 1 cut(s) | 266 |
| Psp6I | CCWGG | 2 cut(s) | 84, 215 |
| PspEI | GGTNACC | 2 cut(s) | 9, 211 |
| PspGI | CCWGG | 2 cut(s) | 84, 215 |
| PspN4I | GGNNCC | 5 cut(s) | 163, 313, 374, 375, 376 |
| PspOMI | GGGCCC | 1 cut(s) | 373 |
| PspPI | GGNCC | 6 cut(s) | 62, 312, 373, 374, 895, 1154 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 586, 618 |
| PstI | CTGCAG | 2 cut(s) | 916, 1108 |
| PstNI | CAGNNNCTG | 2 cut(s) | 65, 977 |
| PsyI | GACNNNGTC | 1 cut(s) | 899 |
| RsaI | GTAC | 3 cut(s) | 410, 509, 650 |
| RsaNI | GTAC | 3 cut(s) | 409, 508, 649 |
| RseI | CAYNNNNRTG | 1 cut(s) | 534 |
| SacI | GAGCTC | 1 cut(s) | 266 |
| SacII | CCGCGG | 1 cut(s) | 514 |
| SapI | GCTCTTC | 1 cut(s) | 34 |
| SaqAI | TTAA | 3 cut(s) | 363, 1094, 1198 |
| Sau3AI | GATC | 1 cut(s) | 349 |
| Sau96I | GGNCC | 6 cut(s) | 62, 312, 373, 374, 895, 1154 |
| SchI | GAGTC | 1 cut(s) | 722 |
| ScrFI | CCNGG | 6 cut(s) | 86, 217, 378, 379, 445, 446 |
| SduI | GDGCHC | 2 cut(s) | 266, 377 |
| SfaNI | GCATC | 4 cut(s) | 535, 733, 898, 1066 |
| SfcI | CTRYAG | 2 cut(s) | 912, 1104 |
| Sfr303I | CCGCGG | 1 cut(s) | 514 |
| SfuI | TTCGAA | 1 cut(s) | 503 |
| SgrBI | CCGCGG | 1 cut(s) | 514 |
| SinI | GGWCC | 1 cut(s) | 895 |
| SmaI | CCCGGG | 2 cut(s) | 379, 446 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 534 |
| SmlI | CTYRAG | 1 cut(s) | 362 |
| SmoI | CTYRAG | 1 cut(s) | 362 |
| Sse9I | AATT | 6 cut(s) | 391, 555, 673, 701, 834, 1045 |
| SseBI | AGGCCT | 1 cut(s) | 440 |
| SsiI | CCGC | 3 cut(s) | 115, 511, 513 |
| SspMI | CTAG | 4 cut(s) | 15, 458, 492, 522 |
| SstI | GAGCTC | 1 cut(s) | 266 |
| StuI | AGGCCT | 1 cut(s) | 440 |
| StyD4I | CCNGG | 6 cut(s) | 84, 215, 376, 377, 443, 444 |
| StyI | CCWWGG | 2 cut(s) | 105, 589 |
| TaiI | ACGT | 1 cut(s) | 410 |
| TaqI | TCGA | 2 cut(s) | 503, 741 |
| TasI | AATT | 6 cut(s) | 391, 555, 673, 701, 834, 1045 |
| TatI | WGTACW | 1 cut(s) | 648 |
| TauI | GCSGC | 1 cut(s) | 516 |
| TfiI | GAWTC | 2 cut(s) | 94, 1100 |
| Tru1I | TTAA | 3 cut(s) | 363, 1094, 1198 |
| Tru9I | TTAA | 3 cut(s) | 363, 1094, 1198 |
| TscAI | CASTG | 2 cut(s) | 487, 672 |
| TseFI | GTSAC | 3 cut(s) | 9, 211, 667 |
| Tsp45I | GTSAC | 3 cut(s) | 9, 211, 667 |
| TspDTI | ATGAA | 5 cut(s) | 17, 36, 42, 777, 933 |
| TspMI | CCCGGG | 2 cut(s) | 377, 444 |
| TspRI | CASTG | 2 cut(s) | 487, 672 |
| Tth111I | GACNNNGTC | 1 cut(s) | 899 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 904 |
| Vha464I | CTTAAG | 1 cut(s) | 362 |
| VpaK11BI | GGWCC | 1 cut(s) | 895 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1022 |
| XapI | RAATTY | 3 cut(s) | 391, 701, 1045 |
| XbaI | TCTAGA | 1 cut(s) | 491 |
| XmaI | CCCGGG | 2 cut(s) | 377, 444 |
| XspI | CTAG | 4 cut(s) | 15, 458, 492, 522 |