Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008034

Physical Location & Seq

Genomic Coordinates Reverse (-)

21740928 .. 21745087

Gene Structure 4160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG119400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCAGAAGGTGTCCAAGGAAGAATACTTGGCTTCATTGCGCCGCCGGAGCAGTGGGTTTTCTAGAGGCGTTTCAAAGTATCGCGGGGTGGCTAGGCATCACCATAATGGGCGATGGGAGGCGCGAATTGGGAGAGTTTTAGGAAACAAGTATTTGTACCTGGGAACTTACAACACACAAGAAGAGGCAGCAGCAGCATATGATGTGGCAGCTATAGAGTACAGAGGAGTAAATGCAGTGACCAATTTTGATATCAGCAACTACATTGACAAACTCAAGAGTGTAGAACCACAAGATCCACCTCCCAATGTAGCACAAGAACAAGTGGAAGTAAAACAAGAAGTACATCAATTTCAACCACAGCCACAGGAACAACAAGAGCAACAACAGGAACAAATATTGGTCTCCCCCAACCTTCAGTATCCACATGTTGTGCCTTGCATAGAAAGTAGTACCACTACAATGCAGGATGTCATGGATCCTACAAATGATCACCAGTTCCAGTTCAATTGGAACTTTTTGGAAAATCTTGTTCCAGTTCCTGACATCCCACTGGATAATGAGCCCTCGGAGTTGCCGGACTTGTTTGGGGACTTGGGCTTTGAGGAAAATTTTGATTTGATGTTTGGAGGTGCAAGTGATGTCAATTTGAGTGGCTTATTGGACACTGAAGCTTGTGGGGTTCAAGCTGCTGTGCCAGGAAACTTGGACGATATTGGGTCTTCTCCTCCTTCTCCTTCTCCATCTTCAACTACTACATCGGTTTCTTGTAACTACTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

261

Amino Acids

29.04

Weight (kDa)

4.53

Isoelectric Point (pI)

62.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	25 - 76	2.7e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320
fragaria_vesca	FvH4_7g04950 FvH4_7g04950 FvH4_7g04950
malus_domestica	MD02G1265300.v1.1 MD07G1054100.v1.1
prunus_persica	Prupe.2G060200_v2.0.a1
pyrus_communis	pycom02g22670 pycom07g04190
rosa_chinensis	RchiOBHm_Chr1g0331141
rosa_laevigata	RLG00000029750
rosa_multiflora	Rmu_sc0006123.1_g000003
rosa_roxburghii	Rroxscaffold_4G00319410
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400
rosa_wichuraiana	Rw1G009290 Rw3G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	84, 124
AciI	CCGC	2 cut(s)	43, 84
AclWI	GGATC	3 cut(s)	290, 473, 486
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	2 cut(s)	401, 690
AfaI	GTAC	4 cut(s)	158, 221, 345, 454
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	5 cut(s)	75, 356, 508, 686, 750
AjnI	CCWGG	2 cut(s)	159, 697
AluBI	AGCT	3 cut(s)	212, 674, 689
AluI	AGCT	3 cut(s)	212, 674, 689
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	3 cut(s)	290, 473, 486
AlwNI	CAGNNNCTG	1 cut(s)	542
ApeKI	GCWGC	5 cut(s)	188, 191, 194, 209, 689
ApoI	RAATTY	1 cut(s)	610
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
AspLEI	GCGC	2 cut(s)	42, 124
AsuHPI	GGTGA	2 cut(s)	92, 485
BamHI	GGATCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	714
BbvI	GCAGC	5 cut(s)	200, 203, 206, 221, 676
BccI	CCATC	2 cut(s)	108, 751
BciT130I	CCWGG	2 cut(s)	161, 699
BciVI	GTATCC	1 cut(s)	432
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	2 cut(s)	63, 93
BfmI	CTRYAG	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	6 cut(s)	43, 189, 192, 195, 210, 690
BlsI	GCNGC	6 cut(s)	44, 190, 193, 196, 211, 691
Bme1390I	CCNGG	2 cut(s)	161, 699
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	2 cut(s)	161, 699
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	409
BsaJI	CCNNGG	3 cut(s)	15, 160, 567
Bse1I	ACTGG	4 cut(s)	496, 502, 536, 558
Bse3DI	GCAATG	1 cut(s)	35
BseBI	CCWGG	2 cut(s)	161, 699
BseDI	CCNNGG	3 cut(s)	15, 160, 567
BseGI	GGATG	2 cut(s)	475, 546
BseMI	GCAATG	1 cut(s)	35
BseNI	ACTGG	4 cut(s)	496, 502, 536, 558
BseRI	GAGGAG	2 cut(s)	240, 717
BseXI	GCAGC	5 cut(s)	200, 203, 206, 221, 676
Bsh1236I	CGCG	2 cut(s)	84, 124
BsiSI	CCGG	2 cut(s)	46, 578
BslFI	GGGAC	1 cut(s)	605
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	605
Bso31I	GGTCTC	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	295, 478, 490
BspACI	CCGC	2 cut(s)	43, 84
BspFNI	CGCG	2 cut(s)	84, 124
BspLI	GGNNCC	1 cut(s)	480
BspPI	GGATC	3 cut(s)	290, 473, 486
BspTNI	GGTCTC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	35
BsrI	ACTGG	4 cut(s)	496, 502, 536, 558
BssECI	CCNNGG	3 cut(s)	15, 160, 567
BssMI	GATC	3 cut(s)	295, 478, 490
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	161, 699
Bst6I	CTCTTC	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	475, 546
BstFNI	CGCG	2 cut(s)	84, 124
BstHHI	GCGC	2 cut(s)	42, 124
BstKTI	GATC	3 cut(s)	298, 481, 493
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	3 cut(s)	295, 478, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 194
BstNI	CCWGG	2 cut(s)	161, 699
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	159, 697
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	2 cut(s)	84, 124
BstV1I	GCAGC	5 cut(s)	200, 203, 206, 221, 676
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	2 cut(s)	295, 478
BstYI	RGATCY	2 cut(s)	295, 478
BsuI	GTATCC	1 cut(s)	432
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	475, 546
BtsI	GCAGTG	2 cut(s)	58, 243
BtsIMutI	CAGTG	4 cut(s)	58, 243, 551, 666
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	2 cut(s)	42, 124
Csp6I	GTAC	4 cut(s)	157, 220, 344, 453
CspCI	CAANNNNNGTGG	2 cut(s)	634, 669
CviAII	CATG	2 cut(s)	428, 475
CviJI	RGCY	9 cut(s)	32, 92, 212, 364, 565, 600, 657, 674, 689
CviKI_1	RGCY	9 cut(s)	32, 92, 212, 364, 565, 600, 657, 674, 689
CviQI	GTAC	4 cut(s)	157, 220, 344, 453
DpnI	GATC	3 cut(s)	297, 480, 492
DpnII	GATC	3 cut(s)	295, 478, 490
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	409
Eco32I	GATATC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	401, 690
EcoRII	CCWGG	2 cut(s)	159, 697
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	431, 478
FaiI	YATR	7 cut(s)	105, 199, 201, 215, 429, 443, 476
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	2 cut(s)	427, 474
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	6 cut(s)	43, 189, 192, 195, 210, 690
FokI	GGATG	2 cut(s)	482, 533
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	6 cut(s)	43, 189, 192, 195, 210, 690
FspBI	CTAG	2 cut(s)	63, 93
GlaI	GCGC	2 cut(s)	41, 123
GluI	GCNGC	6 cut(s)	43, 189, 192, 195, 210, 690
HapII	CCGG	2 cut(s)	46, 578
HhaI	GCGC	2 cut(s)	42, 124
Hin1II	CATG	2 cut(s)	431, 478
Hin6I	GCGC	2 cut(s)	40, 122
HinP1I	GCGC	2 cut(s)	40, 122
HindIII	AAGCTT	1 cut(s)	672
HpaII	CCGG	2 cut(s)	46, 578
HphI	GGTGA	2 cut(s)	92, 485
Hpy188I	TCNGA	1 cut(s)	571
Hpy188III	TCNNGA	3 cut(s)	63, 277, 542
HpyAV	CCTTC	3 cut(s)	425, 741, 747
HpyCH4V	TGCA	5 cut(s)	4, 236, 441, 466, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 194
Hsp92II	CATG	2 cut(s)	431, 478
HspAI	GCGC	2 cut(s)	40, 122
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	295, 478, 490
LmnI	GCTCC	1 cut(s)	48
Lsp1109I	GCAGC	5 cut(s)	200, 203, 206, 221, 676
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	63, 93
MaeIII	GTNAC	2 cut(s)	238, 770
MalI	GATC	3 cut(s)	297, 480, 492
MboI	GATC	3 cut(s)	295, 478, 490
MboII	GAAGA	4 cut(s)	32, 194, 714, 738
MfeI	CAATTG	1 cut(s)	508
MflI	RGATCY	2 cut(s)	295, 478
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	6 cut(s)	126, 244, 350, 508, 610, 646
MnlI	CCTC	9 cut(s)	59, 112, 178, 218, 312, 577, 598, 623, 738
MslI	CAYNNNNRTG	2 cut(s)	105, 461
MspI	CCGG	2 cut(s)	46, 578
MspR9I	CCNGG	2 cut(s)	161, 699
MunI	CAATTG	1 cut(s)	508
MvaI	CCWGG	2 cut(s)	161, 699
MvnI	CGCG	2 cut(s)	84, 124
MwoI	GCNNNNNNNGC	2 cut(s)	48, 194
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	3 cut(s)	295, 478, 490
NlaIII	CATG	2 cut(s)	431, 478
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	431
PciI	ACATGT	1 cut(s)	427
PkrI	GCNGC	6 cut(s)	44, 190, 193, 196, 211, 691
PscI	ACATGT	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	159, 697
PspGI	CCWGG	2 cut(s)	159, 697
PspN4I	GGNNCC	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	2 cut(s)	295, 478
RsaI	GTAC	4 cut(s)	158, 221, 345, 454
RsaNI	GTAC	4 cut(s)	157, 220, 344, 453
RseI	CAYNNNNRTG	2 cut(s)	105, 461
SatI	GCNGC	6 cut(s)	43, 189, 192, 195, 210, 690
Sau3AI	GATC	3 cut(s)	295, 478, 490
ScrFI	CCNGG	2 cut(s)	161, 699
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	8 cut(s)	12, 162, 214, 304, 417, 634, 676, 691
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	2 cut(s)	105, 461
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	6 cut(s)	126, 244, 350, 508, 610, 646
SsiI	CCGC	2 cut(s)	43, 84
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	2 cut(s)	63, 93
StyD4I	CCNGG	2 cut(s)	159, 697
StyI	CCWWGG	1 cut(s)	15
TasI	AATT	6 cut(s)	126, 244, 350, 508, 610, 646
TatI	WGTACW	2 cut(s)	219, 343
TauI	GCSGC	1 cut(s)	45
TscAI	CASTG	4 cut(s)	58, 243, 558, 673
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	5 cut(s)	188, 191, 194, 209, 689
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	24
TspRI	CASTG	4 cut(s)	58, 243, 558, 673
XapI	RAATTY	1 cut(s)	610
XbaI	TCTAGA	1 cut(s)	62
XceI	RCATGY	1 cut(s)	431
XspI	CTAG	2 cut(s)	63, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.