Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008034

Physical Location & Seq

Genomic Coordinates Reverse (-)

20424428 .. 20428818

Gene Structure 4391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAAGAGGTCTCCTAGTTATTCTTGCTCTTCTTCCTCTTCTTCTTCATCTTCCTCATGTGCTGGCCCTGAAATTCCAACCACCCTGAAACAATCAGACAACCCCAAACCCAAACGCAGTAGAAAAACCCACAAGAACTCTGCAGAGAAATGCCCAGACTCAGGCGGAAGAAGCTCAATTTACAGAGGGGTCACCAGGCATAGATGGACTGGAAGGTATGAAGCTCATCTCTGGGATAAGACTTCATGGAATGACATTCAGAAAAAGAAAGGACGGCAAGTTTATTTGGGGGCCTATGATAGTGAGGATGCTGCTGCTCATACATATGATCTTGCTGCCCTTAAGTATTGGGGTCCTGAAACCATCCTCAACTTCCCGCTGGAGACATACACCAAGGAACTTGATGAAATGCAGAAGGTGTCCAAGGAAGAATACTTGGCTTCATTGCGCCGCCGGAGCAGTGGGTTTTCTAGAGGCGTTTCAAAGTATCGTGGGGTGGCTAGGCATCACCATAATGGGCGATGGGAGGCGCGAATTGGGAGAGTTTTAGGAAACAAGTATTTGTACCTGGGAACTTACAACACACAAGAAGAGGCAGCAGCAGCATATGATGTGGCAGCTATAGAGTACAGAGGAGTAAATGCAGTGACCAATTTTGATATCAGCAACTACATTGACAAGGTCAAGAGTGTAGAACCACAAGATCCACCTCCCAATGTAGCACAAGGACAATTGGAAGTAAAACAAGAAGTACATCAATTTCAACCACAGCCACAGGAACAACAAGAGCAACAACAGGAACAAATATTGGTCTCCCCCAACCTTCAGTATCCACATGTTGTGCCTTGCATAGAAAGTAGTACCACTACAATGCAGGATGTCATGGATCCTACAAATGATCACCAGTTCCAGTTCAATTGGAACTTTTTGGAAAATCTTGTTCCAGTTCCTGACATCCCACTGGATAATGAGCCCTCGGAGTTGCCGGACTTGTTTGGGGACTTGGGCTTTGAGGAAAATTTTGATTTGATGTTTGGAGGTGCAAGTGATGTCAATTTGAGTGGCTTATTGGACACTGAAGCTTGTGGGGTTCAAGCTGCTGTGCCAGGAAACTTGGACGATAATGGGTCTTCTCCTCCTTCTCCTTCTCCATCTTCAACTACTACATCGGTTTCTTGTAACTACTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

397

Amino Acids

44.29

Weight (kDa)

5.37

Isoelectric Point (pI)

63.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	61 - 118	1.5e-10	AP2 domain
AP2	PF00847	161 - 212	5.1e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320
fragaria_vesca	FvH4_7g04950 FvH4_7g04950 FvH4_7g04950
malus_domestica	MD02G1265300.v1.1 MD07G1054100.v1.1
prunus_persica	Prupe.2G060200_v2.0.a1
pyrus_communis	pycom02g22670 pycom07g04190
rosa_chinensis	RchiOBHm_Chr1g0331141
rosa_laevigata	RLG00000029750
rosa_multiflora	Rmu_sc0006123.1_g000003
rosa_roxburghii	Rroxscaffold_4G00319410
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400
rosa_wichuraiana	Rw1G009290 Rw3G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	532
AciI	CCGC	3 cut(s)	165, 377, 451
AclWI	GGATC	3 cut(s)	698, 881, 894
AcsI	RAATTY	2 cut(s)	72, 1018
AcuI	CTGAAG	2 cut(s)	809, 1098
AfaI	GTAC	4 cut(s)	566, 629, 753, 862
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflII	CTTAAG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	5 cut(s)	483, 764, 916, 1094, 1158
AjnI	CCWGG	3 cut(s)	194, 567, 1105
AluBI	AGCT	5 cut(s)	174, 224, 620, 1082, 1097
AluI	AGCT	5 cut(s)	174, 224, 620, 1082, 1097
Alw26I	GTCTC	3 cut(s)	15, 377, 817
AlwI	GGATC	3 cut(s)	698, 881, 894
AlwNI	CAGNNNCTG	1 cut(s)	950
AoxI	GGCC	2 cut(s)	64, 291
ApeKI	GCWGC	8 cut(s)	311, 314, 335, 596, 599, 602, 617, 1097
ApoI	RAATTY	2 cut(s)	72, 1018
ArsI	GACNNNNNNTTYG	2 cut(s)	992, 1024
AspLEI	GCGC	2 cut(s)	450, 532
AspS9I	GGNCC	3 cut(s)	65, 291, 353
AsuHPI	GGTGA	3 cut(s)	184, 500, 893
AvaII	GGWCC	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	886
BanII	GRGCYC	1 cut(s)	975
BbsI	GAAGAC	1 cut(s)	1122
BbvI	GCAGC	8 cut(s)	298, 301, 322, 608, 611, 614, 629, 1084
BccI	CCATC	4 cut(s)	198, 371, 516, 1159
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	3 cut(s)	196, 569, 1107
BciVI	GTATCC	1 cut(s)	840
BclI	TGATCA	1 cut(s)	898
BcoDI	GTCTC	3 cut(s)	15, 377, 817
BfaI	CTAG	3 cut(s)	15, 471, 501
BfmI	CTRYAG	2 cut(s)	141, 621
BfrI	CTTAAG	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	840
BisI	GCNGC	9 cut(s)	312, 315, 336, 451, 597, 600, 603, 618, 1098
BlsI	GCNGC	9 cut(s)	313, 316, 337, 452, 598, 601, 604, 619, 1099
Bme1390I	CCNGG	3 cut(s)	196, 569, 1107
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	3 cut(s)	65, 291, 353
BmiI	GGNNCC	3 cut(s)	292, 354, 888
BmrFI	CCNGG	3 cut(s)	196, 569, 1107
BmsI	GCATC	2 cut(s)	298, 514
BpiI	GAAGAC	1 cut(s)	1122
BpmI	CTGGAG	1 cut(s)	401
BsaI	GGTCTC	2 cut(s)	15, 817
BsaJI	CCNNGG	4 cut(s)	393, 423, 568, 975
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	5 cut(s)	214, 904, 910, 944, 966
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	3 cut(s)	196, 569, 1107
BseDI	CCNNGG	4 cut(s)	393, 423, 568, 975
BseGI	GGATG	4 cut(s)	313, 363, 883, 954
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	5 cut(s)	214, 904, 910, 944, 966
BseRI	GAGGAG	2 cut(s)	648, 1125
BseXI	GCAGC	8 cut(s)	298, 301, 322, 608, 611, 614, 629, 1084
Bsh1236I	CGCG	1 cut(s)	532
BshFI	GGCC	2 cut(s)	66, 293
BsiSI	CCGG	2 cut(s)	454, 986
BslFI	GGGAC	1 cut(s)	1013
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	3 cut(s)	15, 377, 817
BsmFI	GGGAC	1 cut(s)	1013
BsnI	GGCC	2 cut(s)	66, 293
Bso31I	GGTCTC	2 cut(s)	15, 817
Bsp1286I	GDGCHC	1 cut(s)	975
Bsp143I	GATC	4 cut(s)	328, 703, 886, 898
BspACI	CCGC	3 cut(s)	165, 377, 451
BspANI	GGCC	2 cut(s)	66, 293
BspCNI	CTCAG	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	292, 354, 888
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	3 cut(s)	698, 881, 894
BspQI	GCTCTTC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	341
BspTNI	GGTCTC	2 cut(s)	15, 817
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	5 cut(s)	214, 904, 910, 944, 966
BssECI	CCNNGG	4 cut(s)	393, 423, 568, 975
BssMI	GATC	4 cut(s)	328, 703, 886, 898
BssT1I	CCWWGG	2 cut(s)	393, 423
Bst2UI	CCWGG	3 cut(s)	196, 569, 1107
Bst6I	CTCTTC	3 cut(s)	34, 43, 585
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	160
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	4 cut(s)	313, 363, 883, 954
BstFNI	CGCG	1 cut(s)	532
BstHHI	GCGC	2 cut(s)	450, 532
BstKTI	GATC	4 cut(s)	331, 706, 889, 901
BstMAI	GTCTC	3 cut(s)	15, 377, 817
BstMBI	GATC	4 cut(s)	328, 703, 886, 898
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 456, 602
BstNI	CCWGG	3 cut(s)	196, 569, 1107
BstNSI	RCATGY	1 cut(s)	839
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	3 cut(s)	194, 567, 1105
BstSFI	CTRYAG	2 cut(s)	141, 621
BstUI	CGCG	1 cut(s)	532
BstV1I	GCAGC	8 cut(s)	298, 301, 322, 608, 611, 614, 629, 1084
BstV2I	GAAGAC	1 cut(s)	1122
BstX2I	RGATCY	2 cut(s)	703, 886
BstYI	RGATCY	2 cut(s)	703, 886
BsuI	GTATCC	1 cut(s)	840
BsuRI	GGCC	2 cut(s)	66, 293
BtgZI	GCGATG	1 cut(s)	535
BtsCI	GGATG	4 cut(s)	313, 363, 883, 954
BtsI	GCAGTG	2 cut(s)	466, 651
BtsIMutI	CAGTG	4 cut(s)	466, 651, 959, 1074
Cac8I	GCNNGC	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	950
CfoI	GCGC	2 cut(s)	450, 532
Cfr13I	GGNCC	3 cut(s)	65, 291, 353
Csp6I	GTAC	4 cut(s)	565, 628, 752, 861
CspCI	CAANNNNNGTGG	2 cut(s)	1042, 1077
CviAII	CATG	4 cut(s)	57, 246, 836, 883
CviQI	GTAC	4 cut(s)	565, 628, 752, 861
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	4 cut(s)	330, 705, 888, 900
DpnII	GATC	4 cut(s)	328, 703, 886, 898
Eam1104I	CTCTTC	3 cut(s)	34, 43, 585
EarI	CTCTTC	3 cut(s)	34, 43, 585
EciI	GGCGGA	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	393, 423
Eco24I	GRGCYC	1 cut(s)	975
Eco31I	GGTCTC	2 cut(s)	15, 817
Eco32I	GATATC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	809, 1098
Eco91I	GGTNACC	1 cut(s)	190
EcoO109I	RGGNCCY	2 cut(s)	291, 353
EcoO65I	GGTNACC	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	194, 567, 1105
EcoRV	GATATC	1 cut(s)	661
EcoT14I	CCWWGG	2 cut(s)	393, 423
EcoT38I	GRGCYC	1 cut(s)	975
ErhI	CCWWGG	2 cut(s)	393, 423
FaeI	CATG	4 cut(s)	60, 249, 839, 886
FaqI	GGGAC	1 cut(s)	1013
FatI	CATG	4 cut(s)	56, 245, 835, 882
FauI	CCCGC	1 cut(s)	384
FauNDI	CATATG	2 cut(s)	325, 607
FbaI	TGATCA	1 cut(s)	898
Fnu4HI	GCNGC	9 cut(s)	312, 315, 336, 451, 597, 600, 603, 618, 1098
FokI	GGATG	4 cut(s)	320, 350, 890, 941
FriOI	GRGCYC	1 cut(s)	975
Fsp4HI	GCNGC	9 cut(s)	312, 315, 336, 451, 597, 600, 603, 618, 1098
FspBI	CTAG	3 cut(s)	15, 471, 501
GlaI	GCGC	2 cut(s)	449, 531
GluI	GCNGC	9 cut(s)	312, 315, 336, 451, 597, 600, 603, 618, 1098
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	66, 293
HapII	CCGG	2 cut(s)	454, 986
HhaI	GCGC	2 cut(s)	450, 532
Hin1II	CATG	4 cut(s)	60, 249, 839, 886
Hin6I	GCGC	2 cut(s)	448, 530
HinP1I	GCGC	2 cut(s)	448, 530
HindIII	AAGCTT	1 cut(s)	1080
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	454, 986
HphI	GGTGA	3 cut(s)	184, 500, 893
Hpy188I	TCNGA	3 cut(s)	97, 261, 979
Hpy188III	TCNNGA	4 cut(s)	356, 471, 685, 950
HpyAV	CCTTC	5 cut(s)	207, 409, 833, 1149, 1155
HpyCH4V	TGCA	6 cut(s)	143, 412, 644, 849, 874, 1043
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 456, 602
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	60, 249, 839, 886
HspAI	GCGC	2 cut(s)	448, 530
Ksp22I	TGATCA	1 cut(s)	898
Kzo9I	GATC	4 cut(s)	328, 703, 886, 898
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	8 cut(s)	298, 301, 322, 608, 611, 614, 629, 1084
LweI	GCATC	2 cut(s)	298, 514
MaeI	CTAG	3 cut(s)	15, 471, 501
MaeIII	GTNAC	3 cut(s)	190, 646, 1178
MalI	GATC	4 cut(s)	330, 705, 888, 900
MboI	GATC	4 cut(s)	328, 703, 886, 898
MfeI	CAATTG	2 cut(s)	731, 916
MflI	RGATCY	2 cut(s)	703, 886
MhlI	GDGCHC	1 cut(s)	975
MluCI	AATT	9 cut(s)	72, 177, 534, 652, 731, 758, 916, 1018, 1054
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	101
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	3 cut(s)	324, 513, 869
MspA1I	CMGCKG	1 cut(s)	379
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	2 cut(s)	454, 986
MspR9I	CCNGG	3 cut(s)	196, 569, 1107
MunI	CAATTG	2 cut(s)	731, 916
MvaI	CCWGG	3 cut(s)	196, 569, 1107
MvnI	CGCG	1 cut(s)	532
MwoI	GCNNNNNNNGC	3 cut(s)	171, 456, 602
NdeI	CATATG	2 cut(s)	325, 607
NdeII	GATC	4 cut(s)	328, 703, 886, 898
NlaIII	CATG	4 cut(s)	60, 249, 839, 886
NlaIV	GGNNCC	3 cut(s)	292, 354, 888
NmuCI	GTSAC	2 cut(s)	190, 646
NspI	RCATGY	1 cut(s)	839
PciI	ACATGT	1 cut(s)	835
PciSI	GCTCTTC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	680
PkrI	GCNGC	9 cut(s)	313, 316, 337, 452, 598, 601, 604, 619, 1099
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	353
PscI	ACATGT	1 cut(s)	835
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	3 cut(s)	194, 567, 1105
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	3 cut(s)	194, 567, 1105
PspN4I	GGNNCC	3 cut(s)	292, 354, 888
PspPI	GGNCC	3 cut(s)	65, 291, 353
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	950
PsuI	RGATCY	2 cut(s)	703, 886
PsyI	GACNNNGTC	1 cut(s)	680
RsaI	GTAC	4 cut(s)	566, 629, 753, 862
RsaNI	GTAC	4 cut(s)	565, 628, 752, 861
RseI	CAYNNNNRTG	3 cut(s)	324, 513, 869
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	9 cut(s)	312, 315, 336, 451, 597, 600, 603, 618, 1098
Sau3AI	GATC	4 cut(s)	328, 703, 886, 898
Sau96I	GGNCC	3 cut(s)	65, 291, 353
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	196, 569, 1107
SduI	GDGCHC	1 cut(s)	975
SfaNI	GCATC	2 cut(s)	298, 514
SfcI	CTRYAG	2 cut(s)	141, 621
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	3 cut(s)	324, 513, 869
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	9 cut(s)	72, 177, 534, 652, 731, 758, 916, 1018, 1054
SsiI	CCGC	3 cut(s)	165, 377, 451
SspI	AATATT	1 cut(s)	807
SspMI	CTAG	3 cut(s)	15, 471, 501
StyD4I	CCNGG	3 cut(s)	194, 567, 1105
StyI	CCWWGG	2 cut(s)	393, 423
TasI	AATT	9 cut(s)	72, 177, 534, 652, 731, 758, 916, 1018, 1054
TatI	WGTACW	2 cut(s)	627, 751
TauI	GCSGC	1 cut(s)	453
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	4 cut(s)	466, 651, 966, 1081
TseFI	GTSAC	2 cut(s)	190, 646
TseI	GCWGC	8 cut(s)	311, 314, 335, 596, 599, 602, 617, 1097
Tsp45I	GTSAC	2 cut(s)	190, 646
TspDTI	ATGAA	6 cut(s)	17, 36, 234, 234, 420, 432
TspRI	CASTG	4 cut(s)	466, 651, 966, 1081
Tth111I	GACNNNGTC	1 cut(s)	680
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	2 cut(s)	72, 1018
XbaI	TCTAGA	1 cut(s)	470
XceI	RCATGY	1 cut(s)	839
XspI	CTAG	3 cut(s)	15, 471, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.