MD07G1054100.v1.1

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
4994511 .. 4999400
4890 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1054100.v1.1.491

Sequence Viewer

Length: 1332 bp
ATGAAGAGGTCCTCCAGTTTCTCCTGCTCTTCTTCTTCTTCTTCGTCCTGCGCCGGGCCGGAGATTCCGAACCACTGCGTCCAGCCGGAGATTCAGAAACCGAAACCGAAACCGAAACGCGTTCGGAAGAAGAGAAAAACCTCCGGAGCAGCAGCGGAAGAGAAATGCCAGAATGCCAACGCCCCGAATTCAGGAACGGCAGGCGGAAGAAGCTCCGTTTACAGAGGGGTCACCAGGCACAGATGGACCGGGCGGTTTGAAGCTCATCTGTGGGACAAGAGTTCATGGAACAACGTCCAGAATAAGAAAGGACGGCAAGGGGCCTATGATAGTGAAGAGGCTGCTGCTCATACCTATGATCTAGCTGCCCTTAAATATTGGGGTCCTGGTACAATACTCAACTTCCCGCAAGAAACATACACTAAGGAAATTGAAGAAATGCAAAAGGCCACCAGGGAAGAATACCTAGCATCATTGCGCCGGCGGAGCAGTGGATTTTCAAGAGGAGTTTCAAAGTACCGTGGGGTAGCGAGGCATCATCATAACGGGAGATGGGAGGCGAGAATCGGAAGAGTATTCGGAAACAAGTACTTATACCTCGGAACATATGATACACAAGAGGAGGCAGCAGCTGCATATGATAAGGCGGCGATAGAGTACAGAGGAGCAAATGCAGTGACCAATTTTGATATCAGCAACTACATTGACAGAGTCAAGAAGAAAATCCATCCTCTGGATCATCAAGAATCAGAGGGTCAACCGCCTTCCACATGCTCGAACATTGGACCACCCCAAGAAGAAGAAGAAGAAGAAGTCGACCGCAAAGTGCACCCATTACTACCACAACAGCAGCAGCAGCAGCAGCAACAAGAACAATGCAAAGTGCACCAATTGCAACCGCAACAGGAGCAGCAGCAGCAAGAAAAACAAGAGCTAAAACAAGAACGAATGATCTCGCCGCAACTTCATTACCCTCATCTGCTGCATTGCATCGAAAGCAATACAATGGAGCAAGTAATGGATCCTGAGCATGCAAAGGAGCACCAGTTTAGTTGGAACTTTTTGGACACCGGAATGATAACTCAGCAGCTTCCAGTTCCCGAAGACATCCACCTCGACAAGTCGTTGGAGTTACCGGACTTGTTCGAGGACTTGGGGTTCGAAGAGAACTTTGACTTGATATTTGGTGCAGCTGGGGATGGCAGCTTGGGTGGCTTGATGGAATCTGCTGGGAGCGGGGTGGATCAGGTGGGTGTCCAAAGAAACTTGGAGGACAATGGGTCTTCTTTTTCTCCATCATCAACAACTACCTCTCTTTCTTTTATAACTTAA

Protein Analysis

444

Amino Acids

49.98

Weight (kDa)

6.12

Isoelectric Point (pI)

64.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 72 - 128 4.7e-08 AP2 domain
AP2 PF00847 171 - 222 8e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1325
AccB7I CCANNNNNTGG 1 cut(s) 733
AccBSI CCGCTC 1 cut(s) 1236
AccI GTMKAC 1 cut(s) 816
AccII CGCG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 143
AclWI GGATC 4 cut(s) 744, 1016, 1029, 1251
AcsI RAATTY 1 cut(s) 187
AfaI GTAC 4 cut(s) 391, 518, 590, 659
AfiI CCNNNNNNNGG 3 cut(s) 54, 191, 733
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 4 cut(s) 260, 434, 501, 513
AhdI GACNNNNNGTC 1 cut(s) 1279
AjnI CCWGG 3 cut(s) 233, 385, 452
AloI GAACNNNNNNTCC 2 cut(s) 1142, 1174
AluBI AGCT 8 cut(s) 213, 263, 365, 632, 934, 1090, 1193, 1206
AluI AGCT 8 cut(s) 213, 263, 365, 632, 934, 1090, 1193, 1206
Alw21I GWGCWC 3 cut(s) 831, 888, 1044
Alw44I GTGCAC 2 cut(s) 827, 884
AlwI GGATC 4 cut(s) 744, 1016, 1029, 1251
AlwNI CAGNNNCTG 1 cut(s) 632
Aor13HI TCCGGA 1 cut(s) 143
AoxI GGCC 3 cut(s) 56, 321, 447
ApaLI GTGCAC 2 cut(s) 827, 884
ApoI RAATTY 1 cut(s) 187
ArsI GACNNNNNNTTYG 4 cut(s) 1142, 1166, 1174, 1198
AspLEI GCGC 2 cut(s) 53, 480
AspS9I GGNCC 6 cut(s) 9, 56, 246, 321, 383, 785
AsuC2I CCSGG 2 cut(s) 55, 250
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 1 cut(s) 1161
AvaII GGWCC 4 cut(s) 9, 246, 383, 785
BaeGI GKGCMC 2 cut(s) 831, 888
BamHI GGATCC 1 cut(s) 1021
BbsI GAAGAC 2 cut(s) 1110, 1275
Bbv12I GWGCWC 3 cut(s) 831, 888, 1044
BccI CCATC 6 cut(s) 237, 546, 735, 1193, 1213, 1303
BceAI ACGGC 2 cut(s) 213, 329
BciT130I CCWGG 3 cut(s) 235, 387, 454
BcnI CCSGG 2 cut(s) 55, 250
BfaI CTAG 2 cut(s) 362, 467
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 5 cut(s) 55, 235, 250, 387, 454
Bme18I GGWCC 4 cut(s) 9, 246, 383, 785
BmeRI GACNNNNNGTC 1 cut(s) 1279
BmgT120I GGNCC 6 cut(s) 9, 56, 246, 321, 383, 785
BmiI GGNNCC 3 cut(s) 322, 384, 1023
BmrFI CCNGG 5 cut(s) 55, 235, 250, 387, 454
BmsI GCATC 3 cut(s) 479, 544, 999
BpiI GAAGAC 2 cut(s) 1110, 1275
Bpu10I CCTNAGC 1 cut(s) 1026
Bpu14I TTCGAA 1 cut(s) 1161
BpuMI CCSGG 2 cut(s) 55, 250
BsaJI CCNNGG 3 cut(s) 453, 520, 598
BsaWI WCCGGW 3 cut(s) 143, 1070, 1135
BsaXI ACNNNNNCTCC 2 cut(s) 1031, 1061
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 191, 733
Bse118I RCCGGY 1 cut(s) 480
Bse1I ACTGG 3 cut(s) 15, 1045, 1094
Bse3DI GCAATG 2 cut(s) 473, 985
BseAI TCCGGA 1 cut(s) 143
BseBI CCWGG 3 cut(s) 235, 387, 454
BseDI CCNNGG 3 cut(s) 453, 520, 598
BseGI GGATG 3 cut(s) 727, 1107, 1204
BseLI CCNNNNNNNGG 3 cut(s) 54, 191, 733
BseMI GCAATG 2 cut(s) 473, 985
BseMII CTCAG 2 cut(s) 1017, 1097
BseNI ACTGG 3 cut(s) 15, 1045, 1094
BseRI GAGGAG 3 cut(s) 519, 635, 678
BseSI GKGCMC 2 cut(s) 831, 888
BseYI CCCAGC 2 cut(s) 1193, 1229
BsgI GTGCAG 1 cut(s) 1209
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 820
BshFI GGCC 3 cut(s) 58, 323, 449
BsiEI CGRYCG 1 cut(s) 820
BsiHKAI GWGCWC 3 cut(s) 831, 888, 1044
BsiSI CCGG 8 cut(s) 54, 59, 86, 144, 249, 481, 1071, 1136
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 3 cut(s) 54, 191, 733
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 3 cut(s) 58, 323, 449
Bsp119I TTCGAA 1 cut(s) 1161
Bsp1286I GDGCHC 3 cut(s) 831, 888, 1044
Bsp13I TCCGGA 1 cut(s) 143
Bsp143I GATC 5 cut(s) 358, 736, 951, 1021, 1243
BspANI GGCC 3 cut(s) 58, 323, 449
BspCNI CTCAG 2 cut(s) 1018, 1096
BspEI TCCGGA 1 cut(s) 143
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 322, 384, 1023
BspPI GGATC 4 cut(s) 744, 1016, 1029, 1251
BspQI GCTCTTC 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 1161
BsrBI CCGCTC 1 cut(s) 1236
BsrDI GCAATG 2 cut(s) 473, 985
BsrFI RCCGGY 1 cut(s) 480
BsrI ACTGG 3 cut(s) 15, 1045, 1094
BssAI RCCGGY 1 cut(s) 480
BssECI CCNNGG 3 cut(s) 453, 520, 598
BssMI GATC 5 cut(s) 358, 736, 951, 1021, 1243
Bst2UI CCWGG 3 cut(s) 235, 387, 454
Bst4CI ACNGT 1 cut(s) 521
Bst6I CTCTTC 6 cut(s) 34, 125, 153, 330, 565, 1158
BstAPI GCANNNNNTGC 2 cut(s) 632, 892
BstBI TTCGAA 1 cut(s) 1161
BstC8I GCNNGC 3 cut(s) 202, 482, 1032
BstDEI CTNAG 3 cut(s) 423, 1026, 1083
BstDSI CCRYGG 1 cut(s) 520
BstEII GGTNACC 1 cut(s) 229
BstF5I GGATG 3 cut(s) 727, 1107, 1204
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 2 cut(s) 53, 480
BstKTI GATC 5 cut(s) 361, 739, 954, 1024, 1246
BstMBI GATC 5 cut(s) 358, 736, 951, 1021, 1243
BstMCI CGRYCG 1 cut(s) 820
BstNI CCWGG 3 cut(s) 235, 387, 454
BstNSI RCATGY 2 cut(s) 774, 1034
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 5 cut(s) 53, 233, 248, 385, 452
BstSLI GKGCMC 2 cut(s) 831, 888
BstUI CGCG 1 cut(s) 120
BstV2I GAAGAC 2 cut(s) 1110, 1275
BstX2I RGATCY 1 cut(s) 1021
BstYI RGATCY 1 cut(s) 1021
BsuRI GGCC 3 cut(s) 58, 323, 449
BtgI CCRYGG 1 cut(s) 520
BtsCI GGATG 3 cut(s) 727, 1107, 1204
BtsI GCAGTG 3 cut(s) 73, 496, 681
BtsIMutI CAGTG 3 cut(s) 73, 496, 681
Cac8I GCNNGC 3 cut(s) 202, 482, 1032
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 2 cut(s) 53, 480
Cfr10I RCCGGY 1 cut(s) 480
Cfr13I GGNCC 6 cut(s) 9, 56, 246, 321, 383, 785
CseI GACGC 1 cut(s) 67
Csp6I GTAC 4 cut(s) 390, 517, 589, 658
CviAII CATG 3 cut(s) 285, 771, 1031
CviQI GTAC 4 cut(s) 390, 517, 589, 658
DdeI CTNAG 3 cut(s) 423, 1026, 1083
DpnI GATC 5 cut(s) 360, 738, 953, 1023, 1245
DpnII GATC 5 cut(s) 358, 736, 951, 1021, 1243
DriI GACNNNNNGTC 1 cut(s) 1279
Eam1104I CTCTTC 6 cut(s) 34, 125, 153, 330, 565, 1158
Eam1105I GACNNNNNGTC 1 cut(s) 1279
EarI CTCTTC 6 cut(s) 34, 125, 153, 330, 565, 1158
EciI GGCGGA 2 cut(s) 219, 499
Eco32I GATATC 1 cut(s) 691
Eco47I GGWCC 4 cut(s) 9, 246, 383, 785
Eco91I GGTNACC 1 cut(s) 229
EcoO109I RGGNCCY 3 cut(s) 9, 321, 383
EcoO65I GGTNACC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 3 cut(s) 233, 385, 452
EcoRV GATATC 1 cut(s) 691
FaeI CATG 3 cut(s) 288, 774, 1034
FaqI GGGAC 1 cut(s) 287
FatI CATG 3 cut(s) 284, 770, 1030
FauI CCCGC 2 cut(s) 414, 1229
FauNDI CATATG 2 cut(s) 607, 637
FblI GTMKAC 1 cut(s) 816
FokI GGATG 3 cut(s) 714, 1094, 1211
FspBI CTAG 2 cut(s) 362, 467
GlaI GCGC 2 cut(s) 52, 479
GsaI CCCAGC 2 cut(s) 1197, 1233
HaeIII GGCC 3 cut(s) 58, 323, 449
HapII CCGG 8 cut(s) 54, 59, 86, 144, 249, 481, 1071, 1136
HgaI GACGC 1 cut(s) 67
HhaI GCGC 2 cut(s) 53, 480
Hin1II CATG 3 cut(s) 288, 774, 1034
Hin6I GCGC 2 cut(s) 51, 478
HinP1I GCGC 2 cut(s) 51, 478
HincII GTYRAC 2 cut(s) 758, 817
HindII GTYRAC 2 cut(s) 758, 817
HinfI GANTC 6 cut(s) 64, 91, 564, 711, 746, 1223
HpaII CCGG 8 cut(s) 54, 59, 86, 144, 249, 481, 1071, 1136
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 5 cut(s) 220, 758, 817, 829, 886
Hpy188I TCNGA 7 cut(s) 69, 96, 126, 569, 581, 602, 751
Hpy188III TCNNGA 9 cut(s) 144, 192, 298, 501, 715, 734, 743, 1025, 1100
Hpy8I GTNNAC 5 cut(s) 220, 758, 817, 829, 886
HpyAV CCTTC 1 cut(s) 774
HpyCH4III ACNGT 1 cut(s) 521
HpyCH4IV ACGT 1 cut(s) 294
HpyF3I CTNAG 3 cut(s) 423, 1026, 1083
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 3 cut(s) 288, 774, 1034
HspAI GCGC 2 cut(s) 51, 478
Kpn2I TCCGGA 1 cut(s) 143
KroI GCCGGC 1 cut(s) 480
KroNI GCCGGC 1 cut(s) 482
Kzo9I GATC 5 cut(s) 358, 736, 951, 1021, 1243
LguI GCTCTTC 1 cut(s) 34
LmnI GCTCC 8 cut(s) 146, 218, 486, 665, 907, 1009, 1039, 1233
LweI GCATC 3 cut(s) 479, 544, 999
MaeI CTAG 2 cut(s) 362, 467
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 229, 676, 1131
MalI GATC 5 cut(s) 360, 738, 953, 1023, 1245
MbiI CCGCTC 1 cut(s) 1236
MboI GATC 5 cut(s) 358, 736, 951, 1021, 1243
MfeI CAATTG 1 cut(s) 890
MflI RGATCY 1 cut(s) 1021
MhlI GDGCHC 3 cut(s) 831, 888, 1044
MluCI AATT 4 cut(s) 187, 429, 682, 890
MluI ACGCGT 1 cut(s) 118
MlyI GAGTC 1 cut(s) 720
MmeI TCCRAC 2 cut(s) 1034, 1107
MreI CGCCGGCG 1 cut(s) 480
MroI TCCGGA 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 480
MseI TTAA 2 cut(s) 372, 1330
MslI CAYNNNNRTG 2 cut(s) 354, 1073
MspA1I CMGCKG 3 cut(s) 155, 632, 1193
MspI CCGG 8 cut(s) 54, 59, 86, 144, 249, 481, 1071, 1136
MspR9I CCNGG 5 cut(s) 55, 235, 250, 387, 454
MunI CAATTG 1 cut(s) 890
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 3 cut(s) 235, 387, 454
MvnI CGCG 1 cut(s) 120
NaeI GCCGGC 1 cut(s) 482
NciI CCSGG 2 cut(s) 55, 250
NdeI CATATG 2 cut(s) 607, 637
NdeII GATC 5 cut(s) 358, 736, 951, 1021, 1243
NgoMIV GCCGGC 1 cut(s) 480
NlaIII CATG 3 cut(s) 288, 774, 1034
NlaIV GGNNCC 3 cut(s) 322, 384, 1023
NmuCI GTSAC 2 cut(s) 229, 676
NspI RCATGY 2 cut(s) 774, 1034
NspV TTCGAA 1 cut(s) 1161
PaeI GCATGC 1 cut(s) 1034
PciSI GCTCTTC 1 cut(s) 34
PctI GAATGC 1 cut(s) 178
PdiI GCCGGC 1 cut(s) 482
PfeI GAWTC 5 cut(s) 64, 91, 564, 746, 1223
PflFI GACNNNGTC 1 cut(s) 710
PflMI CCANNNNNTGG 1 cut(s) 733
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
PpuMI RGGWCCY 2 cut(s) 9, 383
PsiI TTATAA 1 cut(s) 1325
Psp5II RGGWCCY 2 cut(s) 9, 383
Psp6I CCWGG 3 cut(s) 233, 385, 452
PspEI GGTNACC 1 cut(s) 229
PspFI CCCAGC 2 cut(s) 1193, 1229
PspGI CCWGG 3 cut(s) 233, 385, 452
PspN4I GGNNCC 3 cut(s) 322, 384, 1023
PspPI GGNCC 6 cut(s) 9, 56, 246, 321, 383, 785
PspPPI RGGWCCY 2 cut(s) 9, 383
PsrI GAACNNNNNNTAC 2 cut(s) 595, 627
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 1021
PsyI GACNNNGTC 1 cut(s) 710
PvuII CAGCTG 2 cut(s) 632, 1193
RsaI GTAC 4 cut(s) 391, 518, 590, 659
RsaNI GTAC 4 cut(s) 390, 517, 589, 658
RseI CAYNNNNRTG 2 cut(s) 354, 1073
SalI GTCGAC 1 cut(s) 815
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 372, 1330
Sau3AI GATC 5 cut(s) 358, 736, 951, 1021, 1243
Sau96I GGNCC 6 cut(s) 9, 56, 246, 321, 383, 785
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 1 cut(s) 720
ScrFI CCNGG 5 cut(s) 55, 235, 250, 387, 454
SduI GDGCHC 3 cut(s) 831, 888, 1044
SfaNI GCATC 3 cut(s) 479, 544, 999
SfuI TTCGAA 1 cut(s) 1161
SgrAI CRCCGGYG 1 cut(s) 480
SinI GGWCC 4 cut(s) 9, 246, 383, 785
SmiMI CAYNNNNRTG 2 cut(s) 354, 1073
SphI GCATGC 1 cut(s) 1034
Sse9I AATT 4 cut(s) 187, 429, 682, 890
SspI AATATT 1 cut(s) 377
SspMI CTAG 2 cut(s) 362, 467
StyD4I CCNGG 5 cut(s) 53, 233, 248, 385, 452
TaaI ACNGT 1 cut(s) 521
TaiI ACGT 1 cut(s) 297
TaqI TCGA 6 cut(s) 776, 816, 993, 1116, 1146, 1161
TasI AATT 4 cut(s) 187, 429, 682, 890
TatI WGTACW 2 cut(s) 588, 657
TauI GCSGC 2 cut(s) 650, 961
TfiI GAWTC 5 cut(s) 64, 91, 564, 746, 1223
Tru1I TTAA 2 cut(s) 372, 1330
Tru9I TTAA 2 cut(s) 372, 1330
TscAI CASTG 3 cut(s) 80, 496, 681
TseFI GTSAC 2 cut(s) 229, 676
Tsp45I GTSAC 2 cut(s) 229, 676
TspDTI ATGAA 3 cut(s) 17, 273, 956
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 3 cut(s) 80, 496, 681
Tth111I GACNNNGTC 1 cut(s) 710
Van91I CCANNNNNTGG 1 cut(s) 733
VneI GTGCAC 2 cut(s) 827, 884
VpaK11BI GGWCC 4 cut(s) 9, 246, 383, 785
XapI RAATTY 1 cut(s) 187
XceI RCATGY 2 cut(s) 774, 1034
XmiI GTMKAC 1 cut(s) 816
XspI CTAG 2 cut(s) 362, 467
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.