transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320 |
| fragaria_vesca | FvH4_7g04950 FvH4_7g04950 FvH4_7g04950 |
| malus_domestica | MD02G1265300.v1.1 MD07G1054100.v1.1 |
| prunus_persica | Prupe.2G060200_v2.0.a1 |
| pyrus_communis | pycom02g22670 pycom07g04190 |
| rosa_chinensis | RchiOBHm_Chr1g0331141 |
| rosa_laevigata | RLG00000029750 |
| rosa_multiflora | Rmu_sc0006123.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00319410 |
| rosa_rugosa | Rorug01G0091800 |
| rosa_samantha | Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400 |
| rosa_wichuraiana | Rw1G009290 Rw3G018400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1325 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 733 |
| AccBSI | CCGCTC | 1 cut(s) | 1236 |
| AccI | GTMKAC | 1 cut(s) | 816 |
| AccII | CGCG | 1 cut(s) | 120 |
| AccIII | TCCGGA | 1 cut(s) | 143 |
| AclWI | GGATC | 4 cut(s) | 744, 1016, 1029, 1251 |
| AcsI | RAATTY | 1 cut(s) | 187 |
| AfaI | GTAC | 4 cut(s) | 391, 518, 590, 659 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 54, 191, 733 |
| AflIII | ACRYGT | 1 cut(s) | 118 |
| AgsI | TTSAA | 4 cut(s) | 260, 434, 501, 513 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1279 |
| AjnI | CCWGG | 3 cut(s) | 233, 385, 452 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1142, 1174 |
| AluBI | AGCT | 8 cut(s) | 213, 263, 365, 632, 934, 1090, 1193, 1206 |
| AluI | AGCT | 8 cut(s) | 213, 263, 365, 632, 934, 1090, 1193, 1206 |
| Alw21I | GWGCWC | 3 cut(s) | 831, 888, 1044 |
| Alw44I | GTGCAC | 2 cut(s) | 827, 884 |
| AlwI | GGATC | 4 cut(s) | 744, 1016, 1029, 1251 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 632 |
| Aor13HI | TCCGGA | 1 cut(s) | 143 |
| AoxI | GGCC | 3 cut(s) | 56, 321, 447 |
| ApaLI | GTGCAC | 2 cut(s) | 827, 884 |
| ApoI | RAATTY | 1 cut(s) | 187 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1142, 1166, 1174, 1198 |
| AspLEI | GCGC | 2 cut(s) | 53, 480 |
| AspS9I | GGNCC | 6 cut(s) | 9, 56, 246, 321, 383, 785 |
| AsuC2I | CCSGG | 2 cut(s) | 55, 250 |
| AsuHPI | GGTGA | 1 cut(s) | 223 |
| AsuII | TTCGAA | 1 cut(s) | 1161 |
| AvaII | GGWCC | 4 cut(s) | 9, 246, 383, 785 |
| BaeGI | GKGCMC | 2 cut(s) | 831, 888 |
| BamHI | GGATCC | 1 cut(s) | 1021 |
| BbsI | GAAGAC | 2 cut(s) | 1110, 1275 |
| Bbv12I | GWGCWC | 3 cut(s) | 831, 888, 1044 |
| BccI | CCATC | 6 cut(s) | 237, 546, 735, 1193, 1213, 1303 |
| BceAI | ACGGC | 2 cut(s) | 213, 329 |
| BciT130I | CCWGG | 3 cut(s) | 235, 387, 454 |
| BcnI | CCSGG | 2 cut(s) | 55, 250 |
| BfaI | CTAG | 2 cut(s) | 362, 467 |
| BmcAI | AGTACT | 1 cut(s) | 590 |
| Bme1390I | CCNGG | 5 cut(s) | 55, 235, 250, 387, 454 |
| Bme18I | GGWCC | 4 cut(s) | 9, 246, 383, 785 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1279 |
| BmgT120I | GGNCC | 6 cut(s) | 9, 56, 246, 321, 383, 785 |
| BmiI | GGNNCC | 3 cut(s) | 322, 384, 1023 |
| BmrFI | CCNGG | 5 cut(s) | 55, 235, 250, 387, 454 |
| BmsI | GCATC | 3 cut(s) | 479, 544, 999 |
| BpiI | GAAGAC | 2 cut(s) | 1110, 1275 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1026 |
| Bpu14I | TTCGAA | 1 cut(s) | 1161 |
| BpuMI | CCSGG | 2 cut(s) | 55, 250 |
| BsaJI | CCNNGG | 3 cut(s) | 453, 520, 598 |
| BsaWI | WCCGGW | 3 cut(s) | 143, 1070, 1135 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1031, 1061 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 54, 191, 733 |
| Bse118I | RCCGGY | 1 cut(s) | 480 |
| Bse1I | ACTGG | 3 cut(s) | 15, 1045, 1094 |
| Bse3DI | GCAATG | 2 cut(s) | 473, 985 |
| BseAI | TCCGGA | 1 cut(s) | 143 |
| BseBI | CCWGG | 3 cut(s) | 235, 387, 454 |
| BseDI | CCNNGG | 3 cut(s) | 453, 520, 598 |
| BseGI | GGATG | 3 cut(s) | 727, 1107, 1204 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 54, 191, 733 |
| BseMI | GCAATG | 2 cut(s) | 473, 985 |
| BseMII | CTCAG | 2 cut(s) | 1017, 1097 |
| BseNI | ACTGG | 3 cut(s) | 15, 1045, 1094 |
| BseRI | GAGGAG | 3 cut(s) | 519, 635, 678 |
| BseSI | GKGCMC | 2 cut(s) | 831, 888 |
| BseYI | CCCAGC | 2 cut(s) | 1193, 1229 |
| BsgI | GTGCAG | 1 cut(s) | 1209 |
| Bsh1236I | CGCG | 1 cut(s) | 120 |
| Bsh1285I | CGRYCG | 1 cut(s) | 820 |
| BshFI | GGCC | 3 cut(s) | 58, 323, 449 |
| BsiEI | CGRYCG | 1 cut(s) | 820 |
| BsiHKAI | GWGCWC | 3 cut(s) | 831, 888, 1044 |
| BsiSI | CCGG | 8 cut(s) | 54, 59, 86, 144, 249, 481, 1071, 1136 |
| BslFI | GGGAC | 1 cut(s) | 287 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 54, 191, 733 |
| BsmFI | GGGAC | 1 cut(s) | 287 |
| BsmI | GAATGC | 1 cut(s) | 178 |
| BsnI | GGCC | 3 cut(s) | 58, 323, 449 |
| Bsp119I | TTCGAA | 1 cut(s) | 1161 |
| Bsp1286I | GDGCHC | 3 cut(s) | 831, 888, 1044 |
| Bsp13I | TCCGGA | 1 cut(s) | 143 |
| Bsp143I | GATC | 5 cut(s) | 358, 736, 951, 1021, 1243 |
| BspANI | GGCC | 3 cut(s) | 58, 323, 449 |
| BspCNI | CTCAG | 2 cut(s) | 1018, 1096 |
| BspEI | TCCGGA | 1 cut(s) | 143 |
| BspFNI | CGCG | 1 cut(s) | 120 |
| BspLI | GGNNCC | 3 cut(s) | 322, 384, 1023 |
| BspPI | GGATC | 4 cut(s) | 744, 1016, 1029, 1251 |
| BspQI | GCTCTTC | 1 cut(s) | 34 |
| BspT104I | TTCGAA | 1 cut(s) | 1161 |
| BsrBI | CCGCTC | 1 cut(s) | 1236 |
| BsrDI | GCAATG | 2 cut(s) | 473, 985 |
| BsrFI | RCCGGY | 1 cut(s) | 480 |
| BsrI | ACTGG | 3 cut(s) | 15, 1045, 1094 |
| BssAI | RCCGGY | 1 cut(s) | 480 |
| BssECI | CCNNGG | 3 cut(s) | 453, 520, 598 |
| BssMI | GATC | 5 cut(s) | 358, 736, 951, 1021, 1243 |
| Bst2UI | CCWGG | 3 cut(s) | 235, 387, 454 |
| Bst4CI | ACNGT | 1 cut(s) | 521 |
| Bst6I | CTCTTC | 6 cut(s) | 34, 125, 153, 330, 565, 1158 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 632, 892 |
| BstBI | TTCGAA | 1 cut(s) | 1161 |
| BstC8I | GCNNGC | 3 cut(s) | 202, 482, 1032 |
| BstDEI | CTNAG | 3 cut(s) | 423, 1026, 1083 |
| BstDSI | CCRYGG | 1 cut(s) | 520 |
| BstEII | GGTNACC | 1 cut(s) | 229 |
| BstF5I | GGATG | 3 cut(s) | 727, 1107, 1204 |
| BstFNI | CGCG | 1 cut(s) | 120 |
| BstHHI | GCGC | 2 cut(s) | 53, 480 |
| BstKTI | GATC | 5 cut(s) | 361, 739, 954, 1024, 1246 |
| BstMBI | GATC | 5 cut(s) | 358, 736, 951, 1021, 1243 |
| BstMCI | CGRYCG | 1 cut(s) | 820 |
| BstNI | CCWGG | 3 cut(s) | 235, 387, 454 |
| BstNSI | RCATGY | 2 cut(s) | 774, 1034 |
| BstPI | GGTNACC | 1 cut(s) | 229 |
| BstSCI | CCNGG | 5 cut(s) | 53, 233, 248, 385, 452 |
| BstSLI | GKGCMC | 2 cut(s) | 831, 888 |
| BstUI | CGCG | 1 cut(s) | 120 |
| BstV2I | GAAGAC | 2 cut(s) | 1110, 1275 |
| BstX2I | RGATCY | 1 cut(s) | 1021 |
| BstYI | RGATCY | 1 cut(s) | 1021 |
| BsuRI | GGCC | 3 cut(s) | 58, 323, 449 |
| BtgI | CCRYGG | 1 cut(s) | 520 |
| BtsCI | GGATG | 3 cut(s) | 727, 1107, 1204 |
| BtsI | GCAGTG | 3 cut(s) | 73, 496, 681 |
| BtsIMutI | CAGTG | 3 cut(s) | 73, 496, 681 |
| Cac8I | GCNNGC | 3 cut(s) | 202, 482, 1032 |
| CaiI | CAGNNNCTG | 1 cut(s) | 632 |
| CfoI | GCGC | 2 cut(s) | 53, 480 |
| Cfr10I | RCCGGY | 1 cut(s) | 480 |
| Cfr13I | GGNCC | 6 cut(s) | 9, 56, 246, 321, 383, 785 |
| CseI | GACGC | 1 cut(s) | 67 |
| Csp6I | GTAC | 4 cut(s) | 390, 517, 589, 658 |
| CviAII | CATG | 3 cut(s) | 285, 771, 1031 |
| CviQI | GTAC | 4 cut(s) | 390, 517, 589, 658 |
| DdeI | CTNAG | 3 cut(s) | 423, 1026, 1083 |
| DpnI | GATC | 5 cut(s) | 360, 738, 953, 1023, 1245 |
| DpnII | GATC | 5 cut(s) | 358, 736, 951, 1021, 1243 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1279 |
| Eam1104I | CTCTTC | 6 cut(s) | 34, 125, 153, 330, 565, 1158 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1279 |
| EarI | CTCTTC | 6 cut(s) | 34, 125, 153, 330, 565, 1158 |
| EciI | GGCGGA | 2 cut(s) | 219, 499 |
| Eco32I | GATATC | 1 cut(s) | 691 |
| Eco47I | GGWCC | 4 cut(s) | 9, 246, 383, 785 |
| Eco91I | GGTNACC | 1 cut(s) | 229 |
| EcoO109I | RGGNCCY | 3 cut(s) | 9, 321, 383 |
| EcoO65I | GGTNACC | 1 cut(s) | 229 |
| EcoRI | GAATTC | 1 cut(s) | 187 |
| EcoRII | CCWGG | 3 cut(s) | 233, 385, 452 |
| EcoRV | GATATC | 1 cut(s) | 691 |
| FaeI | CATG | 3 cut(s) | 288, 774, 1034 |
| FaqI | GGGAC | 1 cut(s) | 287 |
| FatI | CATG | 3 cut(s) | 284, 770, 1030 |
| FauI | CCCGC | 2 cut(s) | 414, 1229 |
| FauNDI | CATATG | 2 cut(s) | 607, 637 |
| FblI | GTMKAC | 1 cut(s) | 816 |
| FokI | GGATG | 3 cut(s) | 714, 1094, 1211 |
| FspBI | CTAG | 2 cut(s) | 362, 467 |
| GlaI | GCGC | 2 cut(s) | 52, 479 |
| GsaI | CCCAGC | 2 cut(s) | 1197, 1233 |
| HaeIII | GGCC | 3 cut(s) | 58, 323, 449 |
| HapII | CCGG | 8 cut(s) | 54, 59, 86, 144, 249, 481, 1071, 1136 |
| HgaI | GACGC | 1 cut(s) | 67 |
| HhaI | GCGC | 2 cut(s) | 53, 480 |
| Hin1II | CATG | 3 cut(s) | 288, 774, 1034 |
| Hin6I | GCGC | 2 cut(s) | 51, 478 |
| HinP1I | GCGC | 2 cut(s) | 51, 478 |
| HincII | GTYRAC | 2 cut(s) | 758, 817 |
| HindII | GTYRAC | 2 cut(s) | 758, 817 |
| HinfI | GANTC | 6 cut(s) | 64, 91, 564, 711, 746, 1223 |
| HpaII | CCGG | 8 cut(s) | 54, 59, 86, 144, 249, 481, 1071, 1136 |
| HphI | GGTGA | 1 cut(s) | 223 |
| Hpy166II | GTNNAC | 5 cut(s) | 220, 758, 817, 829, 886 |
| Hpy188I | TCNGA | 7 cut(s) | 69, 96, 126, 569, 581, 602, 751 |
| Hpy188III | TCNNGA | 9 cut(s) | 144, 192, 298, 501, 715, 734, 743, 1025, 1100 |
| Hpy8I | GTNNAC | 5 cut(s) | 220, 758, 817, 829, 886 |
| HpyAV | CCTTC | 1 cut(s) | 774 |
| HpyCH4III | ACNGT | 1 cut(s) | 521 |
| HpyCH4IV | ACGT | 1 cut(s) | 294 |
| HpyF3I | CTNAG | 3 cut(s) | 423, 1026, 1083 |
| HpySE526I | ACGT | 1 cut(s) | 294 |
| Hsp92II | CATG | 3 cut(s) | 288, 774, 1034 |
| HspAI | GCGC | 2 cut(s) | 51, 478 |
| Kpn2I | TCCGGA | 1 cut(s) | 143 |
| KroI | GCCGGC | 1 cut(s) | 480 |
| KroNI | GCCGGC | 1 cut(s) | 482 |
| Kzo9I | GATC | 5 cut(s) | 358, 736, 951, 1021, 1243 |
| LguI | GCTCTTC | 1 cut(s) | 34 |
| LmnI | GCTCC | 8 cut(s) | 146, 218, 486, 665, 907, 1009, 1039, 1233 |
| LweI | GCATC | 3 cut(s) | 479, 544, 999 |
| MaeI | CTAG | 2 cut(s) | 362, 467 |
| MaeII | ACGT | 1 cut(s) | 294 |
| MaeIII | GTNAC | 3 cut(s) | 229, 676, 1131 |
| MalI | GATC | 5 cut(s) | 360, 738, 953, 1023, 1245 |
| MbiI | CCGCTC | 1 cut(s) | 1236 |
| MboI | GATC | 5 cut(s) | 358, 736, 951, 1021, 1243 |
| MfeI | CAATTG | 1 cut(s) | 890 |
| MflI | RGATCY | 1 cut(s) | 1021 |
| MhlI | GDGCHC | 3 cut(s) | 831, 888, 1044 |
| MluCI | AATT | 4 cut(s) | 187, 429, 682, 890 |
| MluI | ACGCGT | 1 cut(s) | 118 |
| MlyI | GAGTC | 1 cut(s) | 720 |
| MmeI | TCCRAC | 2 cut(s) | 1034, 1107 |
| MreI | CGCCGGCG | 1 cut(s) | 480 |
| MroI | TCCGGA | 1 cut(s) | 143 |
| MroNI | GCCGGC | 1 cut(s) | 480 |
| MseI | TTAA | 2 cut(s) | 372, 1330 |
| MslI | CAYNNNNRTG | 2 cut(s) | 354, 1073 |
| MspA1I | CMGCKG | 3 cut(s) | 155, 632, 1193 |
| MspI | CCGG | 8 cut(s) | 54, 59, 86, 144, 249, 481, 1071, 1136 |
| MspR9I | CCNGG | 5 cut(s) | 55, 235, 250, 387, 454 |
| MunI | CAATTG | 1 cut(s) | 890 |
| Mva1269I | GAATGC | 1 cut(s) | 178 |
| MvaI | CCWGG | 3 cut(s) | 235, 387, 454 |
| MvnI | CGCG | 1 cut(s) | 120 |
| NaeI | GCCGGC | 1 cut(s) | 482 |
| NciI | CCSGG | 2 cut(s) | 55, 250 |
| NdeI | CATATG | 2 cut(s) | 607, 637 |
| NdeII | GATC | 5 cut(s) | 358, 736, 951, 1021, 1243 |
| NgoMIV | GCCGGC | 1 cut(s) | 480 |
| NlaIII | CATG | 3 cut(s) | 288, 774, 1034 |
| NlaIV | GGNNCC | 3 cut(s) | 322, 384, 1023 |
| NmuCI | GTSAC | 2 cut(s) | 229, 676 |
| NspI | RCATGY | 2 cut(s) | 774, 1034 |
| NspV | TTCGAA | 1 cut(s) | 1161 |
| PaeI | GCATGC | 1 cut(s) | 1034 |
| PciSI | GCTCTTC | 1 cut(s) | 34 |
| PctI | GAATGC | 1 cut(s) | 178 |
| PdiI | GCCGGC | 1 cut(s) | 482 |
| PfeI | GAWTC | 5 cut(s) | 64, 91, 564, 746, 1223 |
| PflFI | GACNNNGTC | 1 cut(s) | 710 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 733 |
| PleI | GAGTC | 1 cut(s) | 719 |
| PpsI | GAGTC | 1 cut(s) | 719 |
| PpuMI | RGGWCCY | 2 cut(s) | 9, 383 |
| PsiI | TTATAA | 1 cut(s) | 1325 |
| Psp5II | RGGWCCY | 2 cut(s) | 9, 383 |
| Psp6I | CCWGG | 3 cut(s) | 233, 385, 452 |
| PspEI | GGTNACC | 1 cut(s) | 229 |
| PspFI | CCCAGC | 2 cut(s) | 1193, 1229 |
| PspGI | CCWGG | 3 cut(s) | 233, 385, 452 |
| PspN4I | GGNNCC | 3 cut(s) | 322, 384, 1023 |
| PspPI | GGNCC | 6 cut(s) | 9, 56, 246, 321, 383, 785 |
| PspPPI | RGGWCCY | 2 cut(s) | 9, 383 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 595, 627 |
| PstNI | CAGNNNCTG | 1 cut(s) | 632 |
| PsuI | RGATCY | 1 cut(s) | 1021 |
| PsyI | GACNNNGTC | 1 cut(s) | 710 |
| PvuII | CAGCTG | 2 cut(s) | 632, 1193 |
| RsaI | GTAC | 4 cut(s) | 391, 518, 590, 659 |
| RsaNI | GTAC | 4 cut(s) | 390, 517, 589, 658 |
| RseI | CAYNNNNRTG | 2 cut(s) | 354, 1073 |
| SalI | GTCGAC | 1 cut(s) | 815 |
| SapI | GCTCTTC | 1 cut(s) | 34 |
| SaqAI | TTAA | 2 cut(s) | 372, 1330 |
| Sau3AI | GATC | 5 cut(s) | 358, 736, 951, 1021, 1243 |
| Sau96I | GGNCC | 6 cut(s) | 9, 56, 246, 321, 383, 785 |
| ScaI | AGTACT | 1 cut(s) | 590 |
| SchI | GAGTC | 1 cut(s) | 720 |
| ScrFI | CCNGG | 5 cut(s) | 55, 235, 250, 387, 454 |
| SduI | GDGCHC | 3 cut(s) | 831, 888, 1044 |
| SfaNI | GCATC | 3 cut(s) | 479, 544, 999 |
| SfuI | TTCGAA | 1 cut(s) | 1161 |
| SgrAI | CRCCGGYG | 1 cut(s) | 480 |
| SinI | GGWCC | 4 cut(s) | 9, 246, 383, 785 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 354, 1073 |
| SphI | GCATGC | 1 cut(s) | 1034 |
| Sse9I | AATT | 4 cut(s) | 187, 429, 682, 890 |
| SspI | AATATT | 1 cut(s) | 377 |
| SspMI | CTAG | 2 cut(s) | 362, 467 |
| StyD4I | CCNGG | 5 cut(s) | 53, 233, 248, 385, 452 |
| TaaI | ACNGT | 1 cut(s) | 521 |
| TaiI | ACGT | 1 cut(s) | 297 |
| TaqI | TCGA | 6 cut(s) | 776, 816, 993, 1116, 1146, 1161 |
| TasI | AATT | 4 cut(s) | 187, 429, 682, 890 |
| TatI | WGTACW | 2 cut(s) | 588, 657 |
| TauI | GCSGC | 2 cut(s) | 650, 961 |
| TfiI | GAWTC | 5 cut(s) | 64, 91, 564, 746, 1223 |
| Tru1I | TTAA | 2 cut(s) | 372, 1330 |
| Tru9I | TTAA | 2 cut(s) | 372, 1330 |
| TscAI | CASTG | 3 cut(s) | 80, 496, 681 |
| TseFI | GTSAC | 2 cut(s) | 229, 676 |
| Tsp45I | GTSAC | 2 cut(s) | 229, 676 |
| TspDTI | ATGAA | 3 cut(s) | 17, 273, 956 |
| TspGWI | ACGGA | 1 cut(s) | 205 |
| TspRI | CASTG | 3 cut(s) | 80, 496, 681 |
| Tth111I | GACNNNGTC | 1 cut(s) | 710 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 733 |
| VneI | GTGCAC | 2 cut(s) | 827, 884 |
| VpaK11BI | GGWCC | 4 cut(s) | 9, 246, 383, 785 |
| XapI | RAATTY | 1 cut(s) | 187 |
| XceI | RCATGY | 2 cut(s) | 774, 1034 |
| XmiI | GTMKAC | 1 cut(s) | 816 |
| XspI | CTAG | 2 cut(s) | 362, 467 |
| ZrmI | AGTACT | 1 cut(s) | 590 |