transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320 |
| fragaria_vesca | FvH4_7g04950 FvH4_7g04950 FvH4_7g04950 |
| malus_domestica | MD02G1265300.v1.1 MD07G1054100.v1.1 |
| prunus_persica | Prupe.2G060200_v2.0.a1 |
| pyrus_communis | pycom02g22670 pycom07g04190 |
| rosa_chinensis | RchiOBHm_Chr1g0331141 |
| rosa_laevigata | RLG00000029750 |
| rosa_multiflora | Rmu_sc0006123.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00319410 |
| rosa_rugosa | Rorug01G0091800 |
| rosa_samantha | Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400 |
| rosa_wichuraiana | Rw1G009290 Rw3G018400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 639 |
| Acc36I | ACCTGC | 1 cut(s) | 1066 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 763 |
| AccII | CGCG | 2 cut(s) | 138, 552 |
| AciI | CCGC | 7 cut(s) | 159, 274, 437, 550, 552, 677, 923 |
| AclI | AACGTT | 1 cut(s) | 84 |
| AclWI | GGATC | 3 cut(s) | 774, 1017, 1242 |
| AcsI | RAATTY | 1 cut(s) | 1159 |
| AfaI | GTAC | 5 cut(s) | 11, 382, 421, 548, 689 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 212, 556, 763 |
| AflIII | ACRYGT | 1 cut(s) | 136 |
| AgsI | TTSAA | 4 cut(s) | 89, 281, 464, 543 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1111 |
| AjnI | CCWGG | 4 cut(s) | 254, 415, 482, 1261 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1133, 1165 |
| AluBI | AGCT | 4 cut(s) | 234, 284, 395, 662 |
| AluI | AGCT | 4 cut(s) | 234, 284, 395, 662 |
| Alw21I | GWGCWC | 4 cut(s) | 59, 855, 912, 1032 |
| Alw44I | GTGCAC | 2 cut(s) | 851, 908 |
| AlwI | GGATC | 3 cut(s) | 774, 1017, 1242 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 106, 662 |
| AoxI | GGCC | 2 cut(s) | 351, 413 |
| ApaLI | GTGCAC | 2 cut(s) | 851, 908 |
| ApoI | RAATTY | 1 cut(s) | 1159 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1133, 1157, 1165, 1189 |
| AspLEI | GCGC | 2 cut(s) | 64, 510 |
| AspS9I | GGNCC | 4 cut(s) | 267, 351, 413, 815 |
| AsuC2I | CCSGG | 1 cut(s) | 271 |
| AsuHPI | GGTGA | 1 cut(s) | 244 |
| AsuII | TTCGAA | 2 cut(s) | 142, 1152 |
| AvaII | GGWCC | 2 cut(s) | 267, 815 |
| BaeGI | GKGCMC | 2 cut(s) | 855, 912 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 34 |
| BbsI | GAAGAC | 1 cut(s) | 1278 |
| Bbv12I | GWGCWC | 4 cut(s) | 59, 855, 912, 1032 |
| BccI | CCATC | 5 cut(s) | 258, 576, 1184, 1204, 1306 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 377, 411 |
| BciT130I | CCWGG | 4 cut(s) | 256, 417, 484, 1263 |
| BclI | TGATCA | 1 cut(s) | 1015 |
| BcnI | CCSGG | 1 cut(s) | 271 |
| BfaI | CTAG | 4 cut(s) | 15, 392, 440, 497 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| BfuAI | ACCTGC | 1 cut(s) | 1066 |
| BlpI | GCTNAGC | 1 cut(s) | 515 |
| Bme1390I | CCNGG | 5 cut(s) | 256, 271, 417, 484, 1263 |
| Bme18I | GGWCC | 2 cut(s) | 267, 815 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1111 |
| BmgT120I | GGNCC | 4 cut(s) | 267, 351, 413, 815 |
| BmiI | GGNNCC | 4 cut(s) | 352, 414, 1080, 1086 |
| BmrFI | CCNGG | 5 cut(s) | 256, 271, 417, 484, 1263 |
| BmsI | GCATC | 2 cut(s) | 509, 574 |
| BpiI | GAAGAC | 1 cut(s) | 1278 |
| BpmI | CTGGAG | 1 cut(s) | 86 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 515 |
| Bpu14I | TTCGAA | 2 cut(s) | 142, 1152 |
| BpuMI | CCSGG | 1 cut(s) | 271 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1014 |
| BsaJI | CCNNGG | 4 cut(s) | 483, 550, 628, 1261 |
| BsaWI | WCCGGW | 3 cut(s) | 1058, 1081, 1126 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1019, 1049 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 212, 556, 763 |
| Bse118I | RCCGGY | 1 cut(s) | 510 |
| Bse1I | ACTGG | 2 cut(s) | 817, 1033 |
| Bse3DI | GCAATG | 2 cut(s) | 503, 973 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1014 |
| BseBI | CCWGG | 4 cut(s) | 256, 417, 484, 1263 |
| BseDI | CCNNGG | 4 cut(s) | 483, 550, 628, 1261 |
| BseGI | GGATG | 3 cut(s) | 315, 1095, 1255 |
| BseJI | GATNNNNATC | 1 cut(s) | 1014 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 212, 556, 763 |
| BseMI | GCAATG | 2 cut(s) | 503, 973 |
| BseMII | CTCAG | 2 cut(s) | 506, 1085 |
| BseNI | ACTGG | 2 cut(s) | 817, 1033 |
| BseRI | GAGGAG | 3 cut(s) | 549, 665, 1040 |
| BseSI | GKGCMC | 2 cut(s) | 855, 912 |
| Bsh1236I | CGCG | 2 cut(s) | 138, 552 |
| BshFI | GGCC | 2 cut(s) | 353, 415 |
| BsiHKAI | GWGCWC | 4 cut(s) | 59, 855, 912, 1032 |
| BsiSI | CCGG | 5 cut(s) | 270, 511, 1059, 1082, 1127 |
| BslFI | GGGAC | 3 cut(s) | 308, 345, 1244 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 212, 556, 763 |
| BsmFI | GGGAC | 3 cut(s) | 308, 345, 1244 |
| BsmI | GAATGC | 1 cut(s) | 848 |
| BsnI | GGCC | 2 cut(s) | 353, 415 |
| Bsp119I | TTCGAA | 2 cut(s) | 142, 1152 |
| Bsp1286I | GDGCHC | 4 cut(s) | 59, 855, 912, 1032 |
| Bsp143I | GATC | 5 cut(s) | 388, 766, 1009, 1015, 1234 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 515 |
| BspACI | CCGC | 7 cut(s) | 159, 274, 437, 550, 552, 677, 923 |
| BspANI | GGCC | 2 cut(s) | 353, 415 |
| BspCNI | CTCAG | 2 cut(s) | 507, 1084 |
| BspFNI | CGCG | 2 cut(s) | 138, 552 |
| BspLI | GGNNCC | 4 cut(s) | 352, 414, 1080, 1086 |
| BspMI | ACCTGC | 1 cut(s) | 1066 |
| BspPI | GGATC | 3 cut(s) | 774, 1017, 1242 |
| BspQI | GCTCTTC | 1 cut(s) | 34 |
| BspT104I | TTCGAA | 2 cut(s) | 142, 1152 |
| BsrDI | GCAATG | 2 cut(s) | 503, 973 |
| BsrFI | RCCGGY | 1 cut(s) | 510 |
| BsrI | ACTGG | 2 cut(s) | 817, 1033 |
| BssAI | RCCGGY | 1 cut(s) | 510 |
| BssECI | CCNNGG | 4 cut(s) | 483, 550, 628, 1261 |
| BssMI | GATC | 5 cut(s) | 388, 766, 1009, 1015, 1234 |
| Bst2UI | CCWGG | 4 cut(s) | 256, 417, 484, 1263 |
| Bst6I | CTCTTC | 5 cut(s) | 34, 143, 360, 595, 1149 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 662, 859, 916 |
| BstBI | TTCGAA | 2 cut(s) | 142, 1152 |
| BstC8I | GCNNGC | 2 cut(s) | 512, 1222 |
| BstDEI | CTNAG | 2 cut(s) | 515, 1071 |
| BstDSI | CCRYGG | 1 cut(s) | 550 |
| BstEII | GGTNACC | 1 cut(s) | 250 |
| BstF5I | GGATG | 3 cut(s) | 315, 1095, 1255 |
| BstFNI | CGCG | 2 cut(s) | 138, 552 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 2 cut(s) | 64, 510 |
| BstKTI | GATC | 5 cut(s) | 391, 769, 1012, 1018, 1237 |
| BstMBI | GATC | 5 cut(s) | 388, 766, 1009, 1015, 1234 |
| BstNI | CCWGG | 4 cut(s) | 256, 417, 484, 1263 |
| BstPI | GGTNACC | 1 cut(s) | 250 |
| BstSCI | CCNGG | 5 cut(s) | 254, 269, 415, 482, 1261 |
| BstSLI | GKGCMC | 2 cut(s) | 855, 912 |
| BstUI | CGCG | 2 cut(s) | 138, 552 |
| BstV2I | GAAGAC | 1 cut(s) | 1278 |
| BsuRI | GGCC | 2 cut(s) | 353, 415 |
| BtgI | CCRYGG | 1 cut(s) | 550 |
| BtsCI | GGATG | 3 cut(s) | 315, 1095, 1255 |
| BtsI | GCAGTG | 2 cut(s) | 526, 711 |
| BtsIMutI | CAGTG | 3 cut(s) | 526, 711, 810 |
| BveI | ACCTGC | 1 cut(s) | 1066 |
| Cac8I | GCNNGC | 2 cut(s) | 512, 1222 |
| CaiI | CAGNNNCTG | 2 cut(s) | 106, 662 |
| CfoI | GCGC | 2 cut(s) | 64, 510 |
| Cfr10I | RCCGGY | 1 cut(s) | 510 |
| Cfr13I | GGNCC | 4 cut(s) | 267, 351, 413, 815 |
| Cfr42I | CCGCGG | 1 cut(s) | 553 |
| Csp6I | GTAC | 5 cut(s) | 10, 381, 420, 547, 688 |
| CviAII | CATG | 3 cut(s) | 306, 979, 1019 |
| CviQI | GTAC | 5 cut(s) | 10, 381, 420, 547, 688 |
| DdeI | CTNAG | 2 cut(s) | 515, 1071 |
| DpnI | GATC | 5 cut(s) | 390, 768, 1011, 1017, 1236 |
| DpnII | GATC | 5 cut(s) | 388, 766, 1009, 1015, 1234 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1111 |
| Eam1104I | CTCTTC | 5 cut(s) | 34, 143, 360, 595, 1149 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1111 |
| EarI | CTCTTC | 5 cut(s) | 34, 143, 360, 595, 1149 |
| Eco32I | GATATC | 1 cut(s) | 721 |
| Eco47I | GGWCC | 2 cut(s) | 267, 815 |
| Eco91I | GGTNACC | 1 cut(s) | 250 |
| EcoO109I | RGGNCCY | 2 cut(s) | 351, 413 |
| EcoO65I | GGTNACC | 1 cut(s) | 250 |
| EcoRII | CCWGG | 4 cut(s) | 254, 415, 482, 1261 |
| EcoRV | GATATC | 1 cut(s) | 721 |
| FaeI | CATG | 3 cut(s) | 309, 982, 1022 |
| FaqI | GGGAC | 3 cut(s) | 308, 345, 1244 |
| FatI | CATG | 3 cut(s) | 305, 978, 1018 |
| FauI | CCCGC | 2 cut(s) | 444, 545 |
| FauNDI | CATATG | 1 cut(s) | 667 |
| FbaI | TGATCA | 1 cut(s) | 1015 |
| FokI | GGATG | 3 cut(s) | 302, 1082, 1262 |
| FspBI | CTAG | 4 cut(s) | 15, 392, 440, 497 |
| GlaI | GCGC | 2 cut(s) | 63, 509 |
| GsuI | CTGGAG | 1 cut(s) | 86 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 2 cut(s) | 353, 415 |
| HapII | CCGG | 5 cut(s) | 270, 511, 1059, 1082, 1127 |
| HhaI | GCGC | 2 cut(s) | 64, 510 |
| Hin1II | CATG | 3 cut(s) | 309, 982, 1022 |
| Hin6I | GCGC | 2 cut(s) | 62, 508 |
| HinP1I | GCGC | 2 cut(s) | 62, 508 |
| HincII | GTYRAC | 2 cut(s) | 736, 788 |
| HindII | GTYRAC | 2 cut(s) | 736, 788 |
| HinfI | GANTC | 7 cut(s) | 70, 97, 594, 741, 1069, 1130, 1214 |
| HpaII | CCGG | 5 cut(s) | 270, 511, 1059, 1082, 1127 |
| HphI | GGTGA | 1 cut(s) | 244 |
| Hpy166II | GTNNAC | 4 cut(s) | 736, 788, 853, 910 |
| Hpy188I | TCNGA | 6 cut(s) | 75, 102, 599, 611, 632, 781 |
| Hpy188III | TCNNGA | 8 cut(s) | 213, 319, 531, 745, 764, 1013, 1088, 1103 |
| Hpy8I | GTNNAC | 4 cut(s) | 736, 788, 853, 910 |
| HpyAV | CCTTC | 2 cut(s) | 322, 804 |
| HpyCH4IV | ACGT | 2 cut(s) | 84, 732 |
| HpyF3I | CTNAG | 2 cut(s) | 515, 1071 |
| HpySE526I | ACGT | 2 cut(s) | 84, 732 |
| Hsp92II | CATG | 3 cut(s) | 309, 982, 1022 |
| HspAI | GCGC | 2 cut(s) | 62, 508 |
| KroI | GCCGGC | 1 cut(s) | 510 |
| KroNI | GCCGGC | 1 cut(s) | 512 |
| Ksp22I | TGATCA | 1 cut(s) | 1015 |
| KspI | CCGCGG | 1 cut(s) | 553 |
| Kzo9I | GATC | 5 cut(s) | 388, 766, 1009, 1015, 1234 |
| LguI | GCTCTTC | 1 cut(s) | 34 |
| LmnI | GCTCC | 3 cut(s) | 239, 997, 1027 |
| LweI | GCATC | 2 cut(s) | 509, 574 |
| MaeI | CTAG | 4 cut(s) | 15, 392, 440, 497 |
| MaeII | ACGT | 2 cut(s) | 84, 732 |
| MaeIII | GTNAC | 3 cut(s) | 250, 706, 1122 |
| MalI | GATC | 5 cut(s) | 390, 768, 1011, 1017, 1236 |
| MboI | GATC | 5 cut(s) | 388, 766, 1009, 1015, 1234 |
| MfeI | CAATTG | 3 cut(s) | 799, 857, 914 |
| MhlI | GDGCHC | 4 cut(s) | 59, 855, 912, 1032 |
| MluCI | AATT | 7 cut(s) | 430, 459, 712, 799, 857, 914, 1159 |
| MluI | ACGCGT | 1 cut(s) | 136 |
| MlyI | GAGTC | 3 cut(s) | 750, 1063, 1124 |
| MmeI | TCCRAC | 2 cut(s) | 1022, 1098 |
| MroNI | GCCGGC | 1 cut(s) | 510 |
| MseI | TTAA | 1 cut(s) | 402 |
| MslI | CAYNNNNRTG | 2 cut(s) | 573, 1061 |
| MspA1I | CMGCKG | 2 cut(s) | 552, 662 |
| MspI | CCGG | 5 cut(s) | 270, 511, 1059, 1082, 1127 |
| MspR9I | CCNGG | 5 cut(s) | 256, 271, 417, 484, 1263 |
| MunI | CAATTG | 3 cut(s) | 799, 857, 914 |
| Mva1269I | GAATGC | 1 cut(s) | 848 |
| MvaI | CCWGG | 4 cut(s) | 256, 417, 484, 1263 |
| MvnI | CGCG | 2 cut(s) | 138, 552 |
| NaeI | GCCGGC | 1 cut(s) | 512 |
| NciI | CCSGG | 1 cut(s) | 271 |
| NdeI | CATATG | 1 cut(s) | 667 |
| NdeII | GATC | 5 cut(s) | 388, 766, 1009, 1015, 1234 |
| NgoMIV | GCCGGC | 1 cut(s) | 510 |
| NlaIII | CATG | 3 cut(s) | 309, 982, 1022 |
| NlaIV | GGNNCC | 4 cut(s) | 352, 414, 1080, 1086 |
| NmeAIII | GCCGAG | 2 cut(s) | 38, 118 |
| NmuCI | GTSAC | 2 cut(s) | 250, 706 |
| NspV | TTCGAA | 2 cut(s) | 142, 1152 |
| PciSI | GCTCTTC | 1 cut(s) | 34 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 90 |
| PctI | GAATGC | 1 cut(s) | 848 |
| PdiI | GCCGGC | 1 cut(s) | 512 |
| PfeI | GAWTC | 4 cut(s) | 70, 97, 594, 1214 |
| PflFI | GACNNNGTC | 1 cut(s) | 740 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 763 |
| PleI | GAGTC | 3 cut(s) | 749, 1063, 1124 |
| PpsI | GAGTC | 3 cut(s) | 749, 1063, 1124 |
| PsiI | TTATAA | 1 cut(s) | 639 |
| Psp1406I | AACGTT | 1 cut(s) | 84 |
| Psp6I | CCWGG | 4 cut(s) | 254, 415, 482, 1261 |
| PspEI | GGTNACC | 1 cut(s) | 250 |
| PspGI | CCWGG | 4 cut(s) | 254, 415, 482, 1261 |
| PspN4I | GGNNCC | 4 cut(s) | 352, 414, 1080, 1086 |
| PspPI | GGNCC | 4 cut(s) | 267, 351, 413, 815 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 625, 657 |
| PstNI | CAGNNNCTG | 2 cut(s) | 106, 662 |
| PsyI | GACNNNGTC | 1 cut(s) | 740 |
| PvuII | CAGCTG | 1 cut(s) | 662 |
| RsaI | GTAC | 5 cut(s) | 11, 382, 421, 548, 689 |
| RsaNI | GTAC | 5 cut(s) | 10, 381, 420, 547, 688 |
| RseI | CAYNNNNRTG | 2 cut(s) | 573, 1061 |
| SacII | CCGCGG | 1 cut(s) | 553 |
| SapI | GCTCTTC | 1 cut(s) | 34 |
| SaqAI | TTAA | 1 cut(s) | 402 |
| Sau3AI | GATC | 5 cut(s) | 388, 766, 1009, 1015, 1234 |
| Sau96I | GGNCC | 4 cut(s) | 267, 351, 413, 815 |
| SchI | GAGTC | 3 cut(s) | 750, 1063, 1124 |
| ScrFI | CCNGG | 5 cut(s) | 256, 271, 417, 484, 1263 |
| SduI | GDGCHC | 4 cut(s) | 59, 855, 912, 1032 |
| SfaNI | GCATC | 2 cut(s) | 509, 574 |
| Sfr303I | CCGCGG | 1 cut(s) | 553 |
| SfuI | TTCGAA | 2 cut(s) | 142, 1152 |
| SgrBI | CCGCGG | 1 cut(s) | 553 |
| SinI | GGWCC | 2 cut(s) | 267, 815 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 573, 1061 |
| Sse9I | AATT | 7 cut(s) | 430, 459, 712, 799, 857, 914, 1159 |
| SsiI | CCGC | 7 cut(s) | 159, 274, 437, 550, 552, 677, 923 |
| SspI | AATATT | 1 cut(s) | 407 |
| SspMI | CTAG | 4 cut(s) | 15, 392, 440, 497 |
| StyD4I | CCNGG | 5 cut(s) | 254, 269, 415, 482, 1261 |
| TaiI | ACGT | 2 cut(s) | 87, 735 |
| TaqI | TCGA | 6 cut(s) | 142, 530, 806, 840, 1137, 1152 |
| TasI | AATT | 7 cut(s) | 430, 459, 712, 799, 857, 914, 1159 |
| TatI | WGTACW | 1 cut(s) | 687 |
| TauI | GCSGC | 1 cut(s) | 680 |
| TfiI | GAWTC | 4 cut(s) | 70, 97, 594, 1214 |
| Tru1I | TTAA | 1 cut(s) | 402 |
| Tru9I | TTAA | 1 cut(s) | 402 |
| TscAI | CASTG | 3 cut(s) | 526, 711, 817 |
| TseFI | GTSAC | 2 cut(s) | 250, 706 |
| Tsp45I | GTSAC | 2 cut(s) | 250, 706 |
| TspDTI | ATGAA | 2 cut(s) | 17, 294 |
| TspRI | CASTG | 3 cut(s) | 526, 711, 817 |
| Tth111I | GACNNNGTC | 1 cut(s) | 740 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 763 |
| VneI | GTGCAC | 2 cut(s) | 851, 908 |
| VpaK11BI | GGWCC | 2 cut(s) | 267, 815 |
| XapI | RAATTY | 1 cut(s) | 1159 |
| XspI | CTAG | 4 cut(s) | 15, 392, 440, 497 |