Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008034

Physical Location & Seq

Genomic Coordinates Reverse (-)

20922668 .. 20927352

Gene Structure 4685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGAAGAGGTCTCCTAGTTATTCTTGCTCTTCTTCCTCTTCTTCTTCATCTTCCTCATGTGCTGGCCCTGAAATTCCAACCACCCTGAAACAATCAGACAAACCCAAACCCAAACGCAGTAGAAAAACCCACAAGAACTCTGCAGAGAAATGCCCAGACTCAGGCGGAAGAAGCTCAATTTACAGAGGGGTCACCAGGCATAGATGGACTGGAAGGTATGAAGCTCATCTCTGGGATAAGACTTCATGGAATGACATTCAGAAAAAGAAAGGACGGCAAGTTTATTTGGGGGCCTATGATAGTGAGGATGCTGCTGCTCATACATATGATCTTGCTGCCCTTAAGTATTGGGGTCCTGAAACCATCCTCAACTTCCCGCTGGAGACATACACCAAGGAACTTGATGAAATGCAGAAGGTGTCCAAGGAAGAATACTTGGCTTCATTGCGCCGCCGGAGCAGTGGGTTTTCTAGAGGCGTTTCAAAGTATCGTGGGGTGGCTAGGCATCACCATAATGGGCGATGGGAGGCGCGAATTGGGAGAGTTTTAGGAAACAAGTATTTGTACCTGGGAACTTACAACACACAAGAAGAGGCAGCAGCAGCATATGATGTGGCAGCTATAGAGTACAGAGGAGTAAATGCAGTGACCAATTTTGATATCAGCAACTACATTGACAAACTCAAGAGTGTAGAACCACAAGATCCACCTCCCAATGTAGCACAAGAACAAGTGGAAGTAAAACAAGAAGTACATCAATTTCAACCACAGCCACAGGAACAAAAAGAGCAACAACAGGAACAAGAGGAGGAACAAATATTGGTCTCCCCCAACCTTCAGTATCCACATGTTGTGCCTTGCATAGAAAGTAGTACCACTACAATGCAGGATGTCATGGATCCTACAAATGATCACCAGTTCCAGTTCAATTGGAACTTTTTGGAAAATCTTGTTCCAGTTCCTGACATCCCACTGGATAATGAGCCCTCGGAGTTGCCGGACTTGTTTGGGGACTTGGGCTTTGAGGAAAATTTTGATTTGATGTTTGGAGGTGCAAGTGATGTCAATTTGAGTGGCTTATTGGACACTGAAGCTTGTGGGGTTCAAGCTGCTGTGCCAGGAAACTTGGACGATATTGGGTCTTCTCCTCCTTCTCCTTCTCCATCTTCAACTACTACATCGGTTTCTTGTAACTACTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

401

Amino Acids

44.89

Weight (kDa)

5.26

Isoelectric Point (pI)

65.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	61 - 118	1.5e-10	AP2 domain
AP2	PF00847	161 - 212	5.1e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320
fragaria_vesca	FvH4_7g04950 FvH4_7g04950 FvH4_7g04950
malus_domestica	MD02G1265300.v1.1 MD07G1054100.v1.1
prunus_persica	Prupe.2G060200_v2.0.a1
pyrus_communis	pycom02g22670 pycom07g04190
rosa_chinensis	RchiOBHm_Chr1g0331141
rosa_laevigata	RLG00000029750
rosa_multiflora	Rmu_sc0006123.1_g000003
rosa_roxburghii	Rroxscaffold_4G00319410
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400
rosa_wichuraiana	Rw1G009290 Rw3G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	532
AciI	CCGC	3 cut(s)	165, 377, 451
AclWI	GGATC	3 cut(s)	698, 893, 906
AcsI	RAATTY	2 cut(s)	72, 1030
AcuI	CTGAAG	2 cut(s)	821, 1110
AfaI	GTAC	4 cut(s)	566, 629, 753, 874
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflII	CTTAAG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	5 cut(s)	483, 764, 928, 1106, 1170
AjnI	CCWGG	3 cut(s)	194, 567, 1117
AluBI	AGCT	5 cut(s)	174, 224, 620, 1094, 1109
AluI	AGCT	5 cut(s)	174, 224, 620, 1094, 1109
Alw26I	GTCTC	3 cut(s)	15, 377, 829
AlwI	GGATC	3 cut(s)	698, 893, 906
AlwNI	CAGNNNCTG	1 cut(s)	962
AoxI	GGCC	2 cut(s)	64, 291
ApeKI	GCWGC	8 cut(s)	311, 314, 335, 596, 599, 602, 617, 1109
ApoI	RAATTY	2 cut(s)	72, 1030
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
AspLEI	GCGC	2 cut(s)	450, 532
AspS9I	GGNCC	3 cut(s)	65, 291, 353
AsuHPI	GGTGA	3 cut(s)	184, 500, 905
AvaII	GGWCC	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	987
BbsI	GAAGAC	1 cut(s)	1134
BbvI	GCAGC	8 cut(s)	298, 301, 322, 608, 611, 614, 629, 1096
BccI	CCATC	4 cut(s)	198, 371, 516, 1171
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	3 cut(s)	196, 569, 1119
BciVI	GTATCC	1 cut(s)	852
BclI	TGATCA	1 cut(s)	910
BcoDI	GTCTC	3 cut(s)	15, 377, 829
BfaI	CTAG	3 cut(s)	15, 471, 501
BfmI	CTRYAG	2 cut(s)	141, 621
BfrI	CTTAAG	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	852
BisI	GCNGC	9 cut(s)	312, 315, 336, 451, 597, 600, 603, 618, 1110
BlsI	GCNGC	9 cut(s)	313, 316, 337, 452, 598, 601, 604, 619, 1111
Bme1390I	CCNGG	3 cut(s)	196, 569, 1119
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	3 cut(s)	65, 291, 353
BmiI	GGNNCC	3 cut(s)	292, 354, 900
BmrFI	CCNGG	3 cut(s)	196, 569, 1119
BmsI	GCATC	2 cut(s)	298, 514
BpiI	GAAGAC	1 cut(s)	1134
BpmI	CTGGAG	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	668
BsaI	GGTCTC	2 cut(s)	15, 829
BsaJI	CCNNGG	4 cut(s)	393, 423, 568, 987
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	5 cut(s)	214, 916, 922, 956, 978
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	3 cut(s)	196, 569, 1119
BseDI	CCNNGG	4 cut(s)	393, 423, 568, 987
BseGI	GGATG	4 cut(s)	313, 363, 895, 966
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	5 cut(s)	214, 916, 922, 956, 978
BseRI	GAGGAG	3 cut(s)	648, 821, 1137
BseXI	GCAGC	8 cut(s)	298, 301, 322, 608, 611, 614, 629, 1096
Bsh1236I	CGCG	1 cut(s)	532
BshFI	GGCC	2 cut(s)	66, 293
BsiSI	CCGG	2 cut(s)	454, 998
BslFI	GGGAC	1 cut(s)	1025
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	3 cut(s)	15, 377, 829
BsmFI	GGGAC	1 cut(s)	1025
BsnI	GGCC	2 cut(s)	66, 293
Bso31I	GGTCTC	2 cut(s)	15, 829
Bsp1286I	GDGCHC	1 cut(s)	987
Bsp143I	GATC	4 cut(s)	328, 703, 898, 910
BspACI	CCGC	3 cut(s)	165, 377, 451
BspANI	GGCC	2 cut(s)	66, 293
BspCNI	CTCAG	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	292, 354, 900
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	3 cut(s)	698, 893, 906
BspQI	GCTCTTC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	341
BspTNI	GGTCTC	2 cut(s)	15, 829
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	5 cut(s)	214, 916, 922, 956, 978
BssECI	CCNNGG	4 cut(s)	393, 423, 568, 987
BssMI	GATC	4 cut(s)	328, 703, 898, 910
BssT1I	CCWWGG	2 cut(s)	393, 423
Bst2UI	CCWGG	3 cut(s)	196, 569, 1119
Bst6I	CTCTTC	3 cut(s)	34, 43, 585
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	160
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	4 cut(s)	313, 363, 895, 966
BstFNI	CGCG	1 cut(s)	532
BstHHI	GCGC	2 cut(s)	450, 532
BstKTI	GATC	4 cut(s)	331, 706, 901, 913
BstMAI	GTCTC	3 cut(s)	15, 377, 829
BstMBI	GATC	4 cut(s)	328, 703, 898, 910
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 456, 602
BstNI	CCWGG	3 cut(s)	196, 569, 1119
BstNSI	RCATGY	1 cut(s)	851
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	3 cut(s)	194, 567, 1117
BstSFI	CTRYAG	2 cut(s)	141, 621
BstUI	CGCG	1 cut(s)	532
BstV1I	GCAGC	8 cut(s)	298, 301, 322, 608, 611, 614, 629, 1096
BstV2I	GAAGAC	1 cut(s)	1134
BstX2I	RGATCY	2 cut(s)	703, 898
BstYI	RGATCY	2 cut(s)	703, 898
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	2 cut(s)	66, 293
BtgZI	GCGATG	1 cut(s)	535
BtsCI	GGATG	4 cut(s)	313, 363, 895, 966
BtsI	GCAGTG	2 cut(s)	466, 651
BtsIMutI	CAGTG	4 cut(s)	466, 651, 971, 1086
Cac8I	GCNNGC	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	962
CfoI	GCGC	2 cut(s)	450, 532
Cfr13I	GGNCC	3 cut(s)	65, 291, 353
Csp6I	GTAC	4 cut(s)	565, 628, 752, 873
CspCI	CAANNNNNGTGG	2 cut(s)	1054, 1089
CviAII	CATG	4 cut(s)	57, 246, 848, 895
CviQI	GTAC	4 cut(s)	565, 628, 752, 873
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	4 cut(s)	330, 705, 900, 912
DpnII	GATC	4 cut(s)	328, 703, 898, 910
Eam1104I	CTCTTC	3 cut(s)	34, 43, 585
EarI	CTCTTC	3 cut(s)	34, 43, 585
EciI	GGCGGA	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	393, 423
Eco24I	GRGCYC	1 cut(s)	987
Eco31I	GGTCTC	2 cut(s)	15, 829
Eco32I	GATATC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	821, 1110
Eco91I	GGTNACC	1 cut(s)	190
EcoO109I	RGGNCCY	2 cut(s)	291, 353
EcoO65I	GGTNACC	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	194, 567, 1117
EcoRV	GATATC	1 cut(s)	661
EcoT14I	CCWWGG	2 cut(s)	393, 423
EcoT38I	GRGCYC	1 cut(s)	987
ErhI	CCWWGG	2 cut(s)	393, 423
FaeI	CATG	4 cut(s)	60, 249, 851, 898
FaqI	GGGAC	1 cut(s)	1025
FatI	CATG	4 cut(s)	56, 245, 847, 894
FauI	CCCGC	1 cut(s)	384
FauNDI	CATATG	2 cut(s)	325, 607
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	9 cut(s)	312, 315, 336, 451, 597, 600, 603, 618, 1110
FokI	GGATG	4 cut(s)	320, 350, 902, 953
FriOI	GRGCYC	1 cut(s)	987
Fsp4HI	GCNGC	9 cut(s)	312, 315, 336, 451, 597, 600, 603, 618, 1110
FspBI	CTAG	3 cut(s)	15, 471, 501
GlaI	GCGC	2 cut(s)	449, 531
GluI	GCNGC	9 cut(s)	312, 315, 336, 451, 597, 600, 603, 618, 1110
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	66, 293
HapII	CCGG	2 cut(s)	454, 998
HhaI	GCGC	2 cut(s)	450, 532
Hin1II	CATG	4 cut(s)	60, 249, 851, 898
Hin6I	GCGC	2 cut(s)	448, 530
HinP1I	GCGC	2 cut(s)	448, 530
HindIII	AAGCTT	1 cut(s)	1092
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	454, 998
HphI	GGTGA	3 cut(s)	184, 500, 905
Hpy188I	TCNGA	3 cut(s)	97, 261, 991
Hpy188III	TCNNGA	4 cut(s)	356, 471, 685, 962
HpyAV	CCTTC	5 cut(s)	207, 409, 845, 1161, 1167
HpyCH4V	TGCA	6 cut(s)	143, 412, 644, 861, 886, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 456, 602
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	60, 249, 851, 898
HspAI	GCGC	2 cut(s)	448, 530
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	4 cut(s)	328, 703, 898, 910
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	8 cut(s)	298, 301, 322, 608, 611, 614, 629, 1096
LweI	GCATC	2 cut(s)	298, 514
MaeI	CTAG	3 cut(s)	15, 471, 501
MaeIII	GTNAC	3 cut(s)	190, 646, 1190
MalI	GATC	4 cut(s)	330, 705, 900, 912
MboI	GATC	4 cut(s)	328, 703, 898, 910
MfeI	CAATTG	1 cut(s)	928
MflI	RGATCY	2 cut(s)	703, 898
MhlI	GDGCHC	1 cut(s)	987
MluCI	AATT	8 cut(s)	72, 177, 534, 652, 758, 928, 1030, 1066
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	101
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	3 cut(s)	324, 513, 881
MspA1I	CMGCKG	1 cut(s)	379
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	2 cut(s)	454, 998
MspR9I	CCNGG	3 cut(s)	196, 569, 1119
MunI	CAATTG	1 cut(s)	928
MvaI	CCWGG	3 cut(s)	196, 569, 1119
MvnI	CGCG	1 cut(s)	532
MwoI	GCNNNNNNNGC	3 cut(s)	171, 456, 602
NdeI	CATATG	2 cut(s)	325, 607
NdeII	GATC	4 cut(s)	328, 703, 898, 910
NlaIII	CATG	4 cut(s)	60, 249, 851, 898
NlaIV	GGNNCC	3 cut(s)	292, 354, 900
NmuCI	GTSAC	2 cut(s)	190, 646
NspI	RCATGY	1 cut(s)	851
PciI	ACATGT	1 cut(s)	847
PciSI	GCTCTTC	1 cut(s)	34
PkrI	GCNGC	9 cut(s)	313, 316, 337, 452, 598, 601, 604, 619, 1111
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	353
PscI	ACATGT	1 cut(s)	847
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	3 cut(s)	194, 567, 1117
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	3 cut(s)	194, 567, 1117
PspN4I	GGNNCC	3 cut(s)	292, 354, 900
PspPI	GGNCC	3 cut(s)	65, 291, 353
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	962
PsuI	RGATCY	2 cut(s)	703, 898
RsaI	GTAC	4 cut(s)	566, 629, 753, 874
RsaNI	GTAC	4 cut(s)	565, 628, 752, 873
RseI	CAYNNNNRTG	3 cut(s)	324, 513, 881
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	9 cut(s)	312, 315, 336, 451, 597, 600, 603, 618, 1110
Sau3AI	GATC	4 cut(s)	328, 703, 898, 910
Sau96I	GGNCC	3 cut(s)	65, 291, 353
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	196, 569, 1119
SduI	GDGCHC	1 cut(s)	987
SfaNI	GCATC	2 cut(s)	298, 514
SfcI	CTRYAG	2 cut(s)	141, 621
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	3 cut(s)	324, 513, 881
SmlI	CTYRAG	2 cut(s)	341, 683
SmoI	CTYRAG	2 cut(s)	341, 683
Sse9I	AATT	8 cut(s)	72, 177, 534, 652, 758, 928, 1030, 1066
SsiI	CCGC	3 cut(s)	165, 377, 451
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	3 cut(s)	15, 471, 501
StyD4I	CCNGG	3 cut(s)	194, 567, 1117
StyI	CCWWGG	2 cut(s)	393, 423
TasI	AATT	8 cut(s)	72, 177, 534, 652, 758, 928, 1030, 1066
TatI	WGTACW	2 cut(s)	627, 751
TauI	GCSGC	1 cut(s)	453
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	4 cut(s)	466, 651, 978, 1093
TseFI	GTSAC	2 cut(s)	190, 646
TseI	GCWGC	8 cut(s)	311, 314, 335, 596, 599, 602, 617, 1109
Tsp45I	GTSAC	2 cut(s)	190, 646
TspDTI	ATGAA	6 cut(s)	17, 36, 234, 234, 420, 432
TspRI	CASTG	4 cut(s)	466, 651, 978, 1093
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	2 cut(s)	72, 1030
XbaI	TCTAGA	1 cut(s)	470
XceI	RCATGY	1 cut(s)	851
XspI	CTAG	3 cut(s)	15, 471, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.