Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008034

Physical Location & Seq

Genomic Coordinates Reverse (-)

19681977 .. 19685731

Gene Structure 3755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG114700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCAACGTTCATATGCACTTTTGCCGCTCTGCTCTGCTCATTTAGTTTATTTGGGGGCCTATGATAGTGAGGATGCTGCTGCTCATACATATGATCTTGCTGCCCTTAAGTATTGGGGTCCTGAAACCATCCTCAACTTCCCGCTGGAGACATACACCAAGGAACTTGATGAAATGCAGAAGGTGTCCAAGGAAGAATACTTGGCTTCATTGCGCCGCCGGAGCAGTGGGTTTTCTAGAGGCGTTTCAAAGTATCGTGGGGTGGCTAGGCATCACCATAATGGGCGATGGGAGGCGCGAATTGGGAGAGTTTTAGGAAACAAGTATTTGTACCTGGGAACTTACAACACACAAGAAGAGGCAGCAGCAGCATATGATGTGGCAGCTATAGAGTACAGAGGAGTAAATGCAGTGACCAATTTTGATATCAGCAACTACATTGACAAACTCAAGAGTGTAGAACCACAAGATCCACCTCCCAATGTAGCACAAGAACAAGTGGAAGTAAAACAAGAAGTACATCAATTTCAACCACAGCCACAGGAACAACAAGAGCAACAACAGGAACAAATATTGGTCTCCCCCAACCTTCAGTATCCACATGTTGTGCCTTGCATAGAAAGTAGTACCACTACAATGCAGGATGTCATGGATCCTACAAATGATCACCAGTTCCAGTTCAATTGGAACTTTTTGGAAAATCTTGTTCCAGTTCCTGACATCCCACTGGATAATGAGCCCTCGGAGTTGCCGGACTTGTTTGGGGACTTGGGCTTTGAGGAAAATTTTGATTTGATGTTTGGAGGTGCAAGTGATGTCAATTTGAGTGGCTTATTGGACACTGAAGCTTGTGGGGTTCAAGCTGCTGTGCCAGGAAACTTGGACGATAATGGGTCTTCTCCTCCTTCTCCTTCTCCATCTTCAACTACTACATCGGTTTCTTGTAACTACTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

319

Amino Acids

35.6

Weight (kDa)

4.49

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	83 - 134	3.7e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320
fragaria_vesca	FvH4_7g04950 FvH4_7g04950 FvH4_7g04950
malus_domestica	MD02G1265300.v1.1 MD07G1054100.v1.1
prunus_persica	Prupe.2G060200_v2.0.a1
pyrus_communis	pycom02g22670 pycom07g04190
rosa_chinensis	RchiOBHm_Chr1g0331141
rosa_laevigata	RLG00000029750
rosa_multiflora	Rmu_sc0006123.1_g000003
rosa_roxburghii	Rroxscaffold_4G00319410
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400
rosa_wichuraiana	Rw1G009290 Rw3G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	28
AccII	CGCG	1 cut(s)	298
AciI	CCGC	3 cut(s)	26, 143, 217
AclI	AACGTT	1 cut(s)	7
AclWI	GGATC	3 cut(s)	464, 647, 660
AcsI	RAATTY	1 cut(s)	784
AcuI	CTGAAG	2 cut(s)	575, 864
AfaI	GTAC	4 cut(s)	332, 395, 519, 628
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	5 cut(s)	249, 530, 682, 860, 924
AjnI	CCWGG	2 cut(s)	333, 871
AluBI	AGCT	3 cut(s)	386, 848, 863
AluI	AGCT	3 cut(s)	386, 848, 863
Alw26I	GTCTC	2 cut(s)	143, 583
AlwI	GGATC	3 cut(s)	464, 647, 660
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	8 cut(s)	77, 80, 101, 362, 365, 368, 383, 863
ApoI	RAATTY	1 cut(s)	784
ArsI	GACNNNNNNTTYG	2 cut(s)	758, 790
AspLEI	GCGC	2 cut(s)	216, 298
AspS9I	GGNCC	2 cut(s)	57, 119
AsuHPI	GGTGA	2 cut(s)	266, 659
AvaII	GGWCC	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	741
BbsI	GAAGAC	1 cut(s)	888
BbvI	GCAGC	8 cut(s)	64, 67, 88, 374, 377, 380, 395, 850
BccI	CCATC	3 cut(s)	137, 282, 925
BciT130I	CCWGG	2 cut(s)	335, 873
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	664
BcoDI	GTCTC	2 cut(s)	143, 583
BfaI	CTAG	2 cut(s)	237, 267
BfmI	CTRYAG	1 cut(s)	387
BfrI	CTTAAG	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	606
Bme1390I	CCNGG	2 cut(s)	335, 873
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	57, 119
BmiI	GGNNCC	3 cut(s)	58, 120, 654
BmrFI	CCNGG	2 cut(s)	335, 873
BmsI	GCATC	2 cut(s)	64, 280
BpiI	GAAGAC	1 cut(s)	888
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	583
BsaJI	CCNNGG	4 cut(s)	159, 189, 334, 741
Bse1I	ACTGG	4 cut(s)	670, 676, 710, 732
Bse3DI	GCAATG	1 cut(s)	209
BseBI	CCWGG	2 cut(s)	335, 873
BseDI	CCNNGG	4 cut(s)	159, 189, 334, 741
BseGI	GGATG	4 cut(s)	79, 129, 649, 720
BseMI	GCAATG	1 cut(s)	209
BseNI	ACTGG	4 cut(s)	670, 676, 710, 732
BseRI	GAGGAG	2 cut(s)	414, 891
BseXI	GCAGC	8 cut(s)	64, 67, 88, 374, 377, 380, 395, 850
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	220, 752
BslFI	GGGAC	1 cut(s)	779
BsmAI	GTCTC	2 cut(s)	143, 583
BsmFI	GGGAC	1 cut(s)	779
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	583
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	4 cut(s)	94, 469, 652, 664
BspACI	CCGC	3 cut(s)	26, 143, 217
BspANI	GGCC	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	58, 120, 654
BspPI	GGATC	3 cut(s)	464, 647, 660
BspTI	CTTAAG	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	583
BsrBI	CCGCTC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	209
BsrI	ACTGG	4 cut(s)	670, 676, 710, 732
BssECI	CCNNGG	4 cut(s)	159, 189, 334, 741
BssMI	GATC	4 cut(s)	94, 469, 652, 664
BssT1I	CCWWGG	2 cut(s)	159, 189
Bst2UI	CCWGG	2 cut(s)	335, 873
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	107
BstF5I	GGATG	4 cut(s)	79, 129, 649, 720
BstFNI	CGCG	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	216, 298
BstKTI	GATC	4 cut(s)	97, 472, 655, 667
BstMAI	GTCTC	2 cut(s)	143, 583
BstMBI	GATC	4 cut(s)	94, 469, 652, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 368
BstNI	CCWGG	2 cut(s)	335, 873
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	333, 871
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	8 cut(s)	64, 67, 88, 374, 377, 380, 395, 850
BstV2I	GAAGAC	1 cut(s)	888
BstX2I	RGATCY	2 cut(s)	469, 652
BstYI	RGATCY	2 cut(s)	469, 652
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	301
BtsCI	GGATG	4 cut(s)	79, 129, 649, 720
BtsI	GCAGTG	2 cut(s)	232, 417
BtsIMutI	CAGTG	4 cut(s)	232, 417, 725, 840
CaiI	CAGNNNCTG	1 cut(s)	716
CfoI	GCGC	2 cut(s)	216, 298
Cfr13I	GGNCC	2 cut(s)	57, 119
Csp6I	GTAC	4 cut(s)	331, 394, 518, 627
CspCI	CAANNNNNGTGG	2 cut(s)	808, 843
CviAII	CATG	2 cut(s)	602, 649
CviQI	GTAC	4 cut(s)	331, 394, 518, 627
DpnI	GATC	4 cut(s)	96, 471, 654, 666
DpnII	GATC	4 cut(s)	94, 469, 652, 664
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	159, 189
Eco24I	GRGCYC	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	583
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	575, 864
EcoO109I	RGGNCCY	2 cut(s)	57, 119
EcoRII	CCWGG	2 cut(s)	333, 871
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	159, 189
EcoT38I	GRGCYC	1 cut(s)	741
ErhI	CCWWGG	2 cut(s)	159, 189
FaeI	CATG	2 cut(s)	605, 652
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	2 cut(s)	601, 648
FauI	CCCGC	1 cut(s)	150
FauNDI	CATATG	3 cut(s)	13, 91, 373
FbaI	TGATCA	1 cut(s)	664
FokI	GGATG	4 cut(s)	86, 116, 656, 707
FriOI	GRGCYC	1 cut(s)	741
FspBI	CTAG	2 cut(s)	237, 267
GlaI	GCGC	2 cut(s)	215, 297
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	220, 752
HhaI	GCGC	2 cut(s)	216, 298
Hin1II	CATG	2 cut(s)	605, 652
Hin6I	GCGC	2 cut(s)	214, 296
HinP1I	GCGC	2 cut(s)	214, 296
HindIII	AAGCTT	1 cut(s)	846
HpaII	CCGG	2 cut(s)	220, 752
HphI	GGTGA	2 cut(s)	266, 659
Hpy188I	TCNGA	1 cut(s)	745
Hpy188III	TCNNGA	4 cut(s)	122, 237, 451, 716
HpyAV	CCTTC	4 cut(s)	175, 599, 915, 921
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	7 cut(s)	4, 17, 178, 410, 615, 640, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 368
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	2 cut(s)	605, 652
HspAI	GCGC	2 cut(s)	214, 296
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	94, 469, 652, 664
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	8 cut(s)	64, 67, 88, 374, 377, 380, 395, 850
LweI	GCATC	2 cut(s)	64, 280
MaeI	CTAG	2 cut(s)	237, 267
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	412, 944
MalI	GATC	4 cut(s)	96, 471, 654, 666
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	4 cut(s)	94, 469, 652, 664
MboII	GAAGA	4 cut(s)	206, 368, 888, 912
MfeI	CAATTG	1 cut(s)	682
MflI	RGATCY	2 cut(s)	469, 652
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	6 cut(s)	300, 418, 524, 682, 784, 820
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	3 cut(s)	90, 279, 635
MspA1I	CMGCKG	1 cut(s)	145
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	2 cut(s)	220, 752
MspR9I	CCNGG	2 cut(s)	335, 873
MunI	CAATTG	1 cut(s)	682
MvaI	CCWGG	2 cut(s)	335, 873
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	222, 368
NdeI	CATATG	3 cut(s)	13, 91, 373
NdeII	GATC	4 cut(s)	94, 469, 652, 664
NlaIII	CATG	2 cut(s)	605, 652
NlaIV	GGNNCC	3 cut(s)	58, 120, 654
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	605
PciI	ACATGT	1 cut(s)	601
PpuMI	RGGWCCY	1 cut(s)	119
PscI	ACATGT	1 cut(s)	601
Psp1406I	AACGTT	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	333, 871
PspGI	CCWGG	2 cut(s)	333, 871
PspN4I	GGNNCC	3 cut(s)	58, 120, 654
PspPI	GGNCC	2 cut(s)	57, 119
PspPPI	RGGWCCY	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	2 cut(s)	469, 652
RsaI	GTAC	4 cut(s)	332, 395, 519, 628
RsaNI	GTAC	4 cut(s)	331, 394, 518, 627
RseI	CAYNNNNRTG	3 cut(s)	90, 279, 635
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	4 cut(s)	94, 469, 652, 664
Sau96I	GGNCC	2 cut(s)	57, 119
ScrFI	CCNGG	2 cut(s)	335, 873
SduI	GDGCHC	1 cut(s)	741
SetI	ASST	9 cut(s)	10, 186, 336, 388, 478, 591, 808, 850, 865
SfaNI	GCATC	2 cut(s)	64, 280
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	3 cut(s)	90, 279, 635
SmlI	CTYRAG	2 cut(s)	107, 449
SmoI	CTYRAG	2 cut(s)	107, 449
Sse9I	AATT	6 cut(s)	300, 418, 524, 682, 784, 820
SsiI	CCGC	3 cut(s)	26, 143, 217
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	2 cut(s)	237, 267
StyD4I	CCNGG	2 cut(s)	333, 871
StyI	CCWWGG	2 cut(s)	159, 189
TaiI	ACGT	1 cut(s)	10
TasI	AATT	6 cut(s)	300, 418, 524, 682, 784, 820
TatI	WGTACW	2 cut(s)	393, 517
TauI	GCSGC	2 cut(s)	28, 219
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	4 cut(s)	232, 417, 732, 847
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	8 cut(s)	77, 80, 101, 362, 365, 368, 383, 863
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	186, 198
TspRI	CASTG	4 cut(s)	232, 417, 732, 847
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	784
XbaI	TCTAGA	1 cut(s)	236
XceI	RCATGY	1 cut(s)	605
XspI	CTAG	2 cut(s)	237, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.