Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008034

Physical Location & Seq

Genomic Coordinates Reverse (-)

5356665 .. 5361495

Gene Structure 4831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04950.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAAGAGGTCTCCTAGTTATTCCTGCTCTTCTTCCTCCTCTTCTTCATCCTCATGTGCTGGCCCTGAGATTCCAACCAACCAGAAACAATCAGACAAACCCAAGCCCAAACGCAGTAGAAAGACCCCCAACAAGTCTGCTGAGAAATGCCAAAACTCAGGTAGAAGAAGCTCAATCTACAGAGGGGTCACCAGGCACAGATGGACTGGAAGGTATGAAGCTCATCTCTGGGATAAGACTTCATGGAATGACATTCAGAAAAAGAAAGGACGGCAAGTTTATTTGGGGGCCTATGATAGTGAGGATGGTGCTGCTCATACATATGATCTTGCTGCACTTAAGTACTGGGGTCCTGGAACCATCCTCAATTTTCCGCTAGAGACATACACCAAGGAACTTGATGAAATGCAGAAGGTGTCCAAGGAAGAATACTTGGCTTCTTTGCGCCGCCGGAGCAGTGGGTTTTCTAGAGGCGTGTCAAAGTATCGTGGGGTGGCTAGGCATCATCATAATGGGAGATGGGAGGCGCGAATTGGAAGAGTATTCGGAAACAAGTACTTGTACCTGGGGACTTACAATACACAAGAAGAGGCAGCGGCAGCGTATGATATGGCAGCTATAGAGTACAGAGGAGCAAATGCGGTGACAAATTTTGATATCAGCAACTACATCGACAGACTCAAGAGTTTAGAGCCACAGGATCCACCTCTGGAATGCTCCCATGTTGCACAAGAACAAGTCGAAGTAAAACAAGAAGTACATCAATTTCAACCACAGCTACAAGAACAACAAGAGCAACAACAACAACATCAAGAACATAAGGAGGAACAGATATTGGTCTCCCCCAAACTTCAGTATCCACAGGTCGCGCCTTGCATAGAAAGTAGTACTGCTACAATGCAGGATGTCATGGATACTACAAATGAGCACCAGTCCCAGTTCAGTTGGAACTTTTTGGACAATCTTCTTCCGGTTCCTGACATCCCACTGGATAATAAGCCCTCGGAGTTACCAGACTTGTTTGAGGACTTGGGATTTGAAGAAAATTTTGACTTGATATTTGGAGGTGCAAGTGATATCAATTTGAGTGGCTTACTGGACACTGCAGCTTGTGGGGTTCAAGCTGGTGTGCCGGAAAACTTGGATGATAATGGGTCTCCATCTCCTTCTCCTTCTCCATCTTCAACTACTACATCGGTTTCTTGTAACTACTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

407

Amino Acids

45.63

Weight (kDa)

5.73

Isoelectric Point (pI)

66.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54320 AT3G54320 AT3G54320 AT3G54320 AT3G54320
fragaria_vesca	FvH4_7g04950 FvH4_7g04950 FvH4_7g04950
malus_domestica	MD02G1265300.v1.1 MD07G1054100.v1.1
prunus_persica	Prupe.2G060200_v2.0.a1
pyrus_communis	pycom02g22670 pycom07g04190
rosa_chinensis	RchiOBHm_Chr1g0331141
rosa_laevigata	RLG00000029750
rosa_multiflora	Rmu_sc0006123.1_g000003
rosa_roxburghii	Rroxscaffold_4G00319410
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG114700 Rh1BG087400 Rh1CG110700 Rh1DG119400
rosa_wichuraiana	Rw1G009290 Rw3G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	529, 869
AciI	CCGC	4 cut(s)	374, 448, 596, 641
AclWI	GGATC	2 cut(s)	695, 708
AcsI	RAATTY	2 cut(s)	649, 1045
AcuI	CTGAAG	1 cut(s)	836
AfaI	GTAC	6 cut(s)	344, 557, 563, 626, 759, 889
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	770, 1040, 1121, 1185
AjnI	CCWGG	3 cut(s)	191, 352, 564
AluBI	AGCT	6 cut(s)	171, 221, 617, 778, 1109, 1124
AluI	AGCT	6 cut(s)	171, 221, 617, 778, 1109, 1124
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	4 cut(s)	15, 374, 844, 1161
AlwI	GGATC	2 cut(s)	695, 708
AoxI	GGCC	2 cut(s)	61, 288
ApeKI	GCWGC	6 cut(s)	311, 332, 593, 599, 614, 1106
ApoI	RAATTY	2 cut(s)	649, 1045
ArsI	GACNNNNNNTTYG	4 cut(s)	1019, 1043, 1051, 1075
AspLEI	GCGC	3 cut(s)	447, 529, 871
AspS9I	GGNCC	3 cut(s)	62, 288, 350
AsuHPI	GGTGA	2 cut(s)	181, 655
AvaII	GGWCC	1 cut(s)	350
BaeI	ACNNNNGTAYC	2 cut(s)	839, 872
BamHI	GGATCC	1 cut(s)	700
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	6 cut(s)	298, 319, 605, 611, 626, 1118
BccI	CCATC	6 cut(s)	195, 299, 368, 513, 1168, 1186
BceAI	ACGGC	1 cut(s)	287
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BciT130I	CCWGG	3 cut(s)	193, 354, 566
BciVI	GTATCC	2 cut(s)	867, 907
BcoDI	GTCTC	4 cut(s)	15, 374, 844, 1161
BfaI	CTAG	4 cut(s)	15, 377, 468, 498
BfmI	CTRYAG	3 cut(s)	178, 618, 1104
BfrI	CTTAAG	1 cut(s)	338
BfuI	GTATCC	2 cut(s)	867, 907
BisI	GCNGC	8 cut(s)	312, 333, 448, 594, 597, 600, 615, 1107
BlsI	GCNGC	8 cut(s)	313, 334, 449, 595, 598, 601, 616, 1108
BmcAI	AGTACT	3 cut(s)	344, 557, 889
Bme1390I	CCNGG	3 cut(s)	193, 354, 566
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	62, 288, 350
BmiI	GGNNCC	5 cut(s)	289, 351, 358, 702, 975
BmrFI	CCNGG	3 cut(s)	193, 354, 566
BmrI	ACTGGG	2 cut(s)	355, 931
BmsI	GCATC	1 cut(s)	511
BmuI	ACTGGG	2 cut(s)	355, 931
BpuEI	CTTGAG	1 cut(s)	665
BsaI	GGTCTC	3 cut(s)	15, 844, 1161
BsaJI	CCNNGG	4 cut(s)	390, 420, 565, 1002
BsaWI	WCCGGW	1 cut(s)	970
Bse1I	ACTGG	6 cut(s)	211, 350, 931, 937, 993, 1101
BseBI	CCWGG	3 cut(s)	193, 354, 566
BseDI	CCNNGG	4 cut(s)	390, 420, 565, 1002
BseGI	GGATG	6 cut(s)	47, 310, 360, 910, 981, 1150
BseMII	CTCAG	3 cut(s)	57, 132, 171
BseNI	ACTGG	6 cut(s)	211, 350, 931, 937, 993, 1101
BseRI	GAGGAG	2 cut(s)	28, 645
BseXI	GCAGC	6 cut(s)	298, 319, 605, 611, 626, 1118
BsgI	GTGCAG	1 cut(s)	318
Bsh1236I	CGCG	2 cut(s)	529, 869
BshFI	GGCC	2 cut(s)	63, 290
BsiHKAI	GWGCWC	1 cut(s)	930
BsiSI	CCGG	3 cut(s)	451, 971, 1133
BslFI	GGGAC	2 cut(s)	583, 919
BsmAI	GTCTC	4 cut(s)	15, 374, 844, 1161
BsmFI	GGGAC	2 cut(s)	583, 919
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	2 cut(s)	63, 290
Bso31I	GGTCTC	3 cut(s)	15, 844, 1161
Bsp1286I	GDGCHC	1 cut(s)	930
Bsp143I	GATC	2 cut(s)	325, 700
BspACI	CCGC	4 cut(s)	374, 448, 596, 641
BspANI	GGCC	2 cut(s)	63, 290
BspCNI	CTCAG	3 cut(s)	58, 133, 170
BspFNI	CGCG	2 cut(s)	529, 869
BspLI	GGNNCC	5 cut(s)	289, 351, 358, 702, 975
BspMAI	CTGCAG	1 cut(s)	1108
BspPI	GGATC	2 cut(s)	695, 708
BspQI	GCTCTTC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	338
BspTNI	GGTCTC	3 cut(s)	15, 844, 1161
BsrI	ACTGG	6 cut(s)	211, 350, 931, 937, 993, 1101
BssECI	CCNNGG	4 cut(s)	390, 420, 565, 1002
BssMI	GATC	2 cut(s)	325, 700
BssT1I	CCWWGG	2 cut(s)	390, 420
Bst2UI	CCWGG	3 cut(s)	193, 354, 566
Bst6I	CTCTTC	4 cut(s)	34, 46, 532, 582
BstAFI	CTTAAG	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	3 cut(s)	66, 141, 157
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	6 cut(s)	47, 310, 360, 910, 981, 1150
BstFNI	CGCG	2 cut(s)	529, 869
BstHHI	GCGC	3 cut(s)	447, 529, 871
BstKTI	GATC	2 cut(s)	328, 703
BstMAI	GTCTC	4 cut(s)	15, 374, 844, 1161
BstMBI	GATC	2 cut(s)	325, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	453, 599
BstNI	CCWGG	3 cut(s)	193, 354, 566
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	3 cut(s)	191, 352, 564
BstSFI	CTRYAG	3 cut(s)	178, 618, 1104
BstUI	CGCG	2 cut(s)	529, 869
BstV1I	GCAGC	6 cut(s)	298, 319, 605, 611, 626, 1118
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
BsuI	GTATCC	2 cut(s)	867, 907
BsuRI	GGCC	2 cut(s)	63, 290
BtsCI	GGATG	6 cut(s)	47, 310, 360, 910, 981, 1150
BtsI	GCAGTG	2 cut(s)	463, 1101
BtsIMutI	CAGTG	3 cut(s)	463, 986, 1101
Cac8I	GCNNGC	1 cut(s)	61
CfoI	GCGC	3 cut(s)	447, 529, 871
Cfr13I	GGNCC	3 cut(s)	62, 288, 350
Csp6I	GTAC	6 cut(s)	343, 556, 562, 625, 758, 888
CspCI	CAANNNNNGTGG	2 cut(s)	1069, 1104
CviAII	CATG	4 cut(s)	54, 243, 722, 910
CviQI	GTAC	6 cut(s)	343, 556, 562, 625, 758, 888
DdeI	CTNAG	3 cut(s)	66, 141, 157
DpnI	GATC	2 cut(s)	327, 702
DpnII	GATC	2 cut(s)	325, 700
Eam1104I	CTCTTC	4 cut(s)	34, 46, 532, 582
EarI	CTCTTC	4 cut(s)	34, 46, 532, 582
Eco130I	CCWWGG	2 cut(s)	390, 420
Eco31I	GGTCTC	3 cut(s)	15, 844, 1161
Eco32I	GATATC	2 cut(s)	658, 1078
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	836
Eco91I	GGTNACC	1 cut(s)	187
EcoO109I	RGGNCCY	2 cut(s)	288, 350
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	3 cut(s)	191, 352, 564
EcoRV	GATATC	2 cut(s)	658, 1078
EcoT14I	CCWWGG	2 cut(s)	390, 420
ErhI	CCWWGG	2 cut(s)	390, 420
FaeI	CATG	4 cut(s)	57, 246, 725, 913
FaqI	GGGAC	2 cut(s)	583, 919
FatI	CATG	4 cut(s)	53, 242, 721, 909
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	8 cut(s)	312, 333, 448, 594, 597, 600, 615, 1107
FokI	GGATG	6 cut(s)	34, 317, 347, 917, 968, 1157
Fsp4HI	GCNGC	8 cut(s)	312, 333, 448, 594, 597, 600, 615, 1107
FspBI	CTAG	4 cut(s)	15, 377, 468, 498
GlaI	GCGC	3 cut(s)	446, 528, 870
GluI	GCNGC	8 cut(s)	312, 333, 448, 594, 597, 600, 615, 1107
HaeIII	GGCC	2 cut(s)	63, 290
HapII	CCGG	3 cut(s)	451, 971, 1133
HhaI	GCGC	3 cut(s)	447, 529, 871
Hin1II	CATG	4 cut(s)	57, 246, 725, 913
Hin6I	GCGC	3 cut(s)	445, 527, 869
HinP1I	GCGC	3 cut(s)	445, 527, 869
HinfI	GANTC	2 cut(s)	70, 678
HpaII	CCGG	3 cut(s)	451, 971, 1133
HphI	GGTGA	2 cut(s)	181, 655
Hpy188I	TCNGA	4 cut(s)	94, 258, 548, 1006
Hpy188III	TCNNGA	5 cut(s)	468, 682, 710, 812, 977
HpyAV	CCTTC	4 cut(s)	204, 406, 1176, 1182
HpyCH4V	TGCA	7 cut(s)	335, 409, 728, 876, 901, 1070, 1106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	453, 599
HpyF3I	CTNAG	3 cut(s)	66, 141, 157
Hsp92II	CATG	4 cut(s)	57, 246, 725, 913
HspAI	GCGC	3 cut(s)	445, 527, 869
Kzo9I	GATC	2 cut(s)	325, 700
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	3 cut(s)	453, 632, 722
Lsp1109I	GCAGC	6 cut(s)	298, 319, 605, 611, 626, 1118
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	4 cut(s)	15, 377, 468, 498
MaeIII	GTNAC	4 cut(s)	187, 643, 1008, 1205
MalI	GATC	2 cut(s)	327, 702
MboI	GATC	2 cut(s)	325, 700
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	1 cut(s)	930
MluCI	AATT	6 cut(s)	367, 531, 649, 764, 1045, 1081
MlyI	GAGTC	1 cut(s)	672
MmeI	TCCRAC	2 cut(s)	98, 926
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	3 cut(s)	52, 321, 510
MspA1I	CMGCKG	1 cut(s)	596
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	3 cut(s)	451, 971, 1133
MspR9I	CCNGG	3 cut(s)	193, 354, 566
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	3 cut(s)	193, 354, 566
MvnI	CGCG	2 cut(s)	529, 869
MwoI	GCNNNNNNNGC	2 cut(s)	453, 599
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	325, 700
NlaIII	CATG	4 cut(s)	57, 246, 725, 913
NlaIV	GGNNCC	5 cut(s)	289, 351, 358, 702, 975
NmuCI	GTSAC	2 cut(s)	187, 643
PciSI	GCTCTTC	1 cut(s)	34
PctI	GAATGC	1 cut(s)	719
PfeI	GAWTC	1 cut(s)	70
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	8 cut(s)	313, 334, 449, 595, 598, 601, 616, 1108
PleI	GAGTC	1 cut(s)	672
PpsI	GAGTC	1 cut(s)	672
PpuMI	RGGWCCY	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	350
Psp6I	CCWGG	3 cut(s)	191, 352, 564
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	3 cut(s)	191, 352, 564
PspN4I	GGNNCC	5 cut(s)	289, 351, 358, 702, 975
PspPI	GGNCC	3 cut(s)	62, 288, 350
PspPPI	RGGWCCY	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	1108
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	6 cut(s)	344, 557, 563, 626, 759, 889
RsaNI	GTAC	6 cut(s)	343, 556, 562, 625, 758, 888
RseI	CAYNNNNRTG	3 cut(s)	52, 321, 510
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	8 cut(s)	312, 333, 448, 594, 597, 600, 615, 1107
Sau3AI	GATC	2 cut(s)	325, 700
Sau96I	GGNCC	3 cut(s)	62, 288, 350
ScaI	AGTACT	3 cut(s)	344, 557, 889
SchI	GAGTC	1 cut(s)	672
ScrFI	CCNGG	3 cut(s)	193, 354, 566
SduI	GDGCHC	1 cut(s)	930
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	3 cut(s)	178, 618, 1104
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	3 cut(s)	52, 321, 510
SmlI	CTYRAG	2 cut(s)	338, 680
SmoI	CTYRAG	2 cut(s)	338, 680
Sse9I	AATT	6 cut(s)	367, 531, 649, 764, 1045, 1081
SsiI	CCGC	4 cut(s)	374, 448, 596, 641
SspMI	CTAG	4 cut(s)	15, 377, 468, 498
StyD4I	CCNGG	3 cut(s)	191, 352, 564
StyI	CCWWGG	2 cut(s)	390, 420
TaqI	TCGA	2 cut(s)	672, 741
TasI	AATT	6 cut(s)	367, 531, 649, 764, 1045, 1081
TatI	WGTACW	5 cut(s)	342, 555, 624, 757, 887
TauI	GCSGC	2 cut(s)	450, 599
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	3 cut(s)	463, 993, 1108
TseFI	GTSAC	2 cut(s)	187, 643
TseI	GCWGC	6 cut(s)	311, 332, 593, 599, 614, 1106
Tsp45I	GTSAC	2 cut(s)	187, 643
TspDTI	ATGAA	5 cut(s)	17, 36, 231, 231, 417
TspRI	CASTG	3 cut(s)	463, 993, 1108
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	2 cut(s)	649, 1045
XbaI	TCTAGA	1 cut(s)	467
XspI	CTAG	4 cut(s)	15, 377, 468, 498
ZrmI	AGTACT	3 cut(s)	344, 557, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.