Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013413

Physical Location & Seq

Genomic Coordinates Forward (+)

20593661 .. 20595345

Gene Structure 1685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGTGATGCAATCGATTTGAGTGGAGATGGTGGCGTCTTGAAAAAGATTGTAAGGAGTGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGTTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTCGCGAAGACAATCTTGTTTTCTCCTTTGAGTTAGGAACAGGCAGTGTTATCCGTTCTTGGGACATTGCTCTTAAAACCATGAAGGTTGGAGAAGTTGCAAAAATTACATGTAAGCCAGAATATGCTTACGGAAGAGCCGGGTCTCCTCCCGACATCCCACCTGATGCAACTTTGATTTTCGAGGTGGAATTGGTTGCTTGTAGACCGAGGAAAGGTGCTAGTGTTGGAAGTGTTTCTGAAGAGAGAGCCAGGCTAGAAGATCTGAAGAAGCAGAGAGAGATTGCTGCAGCTGCGAAAGAGGATGATAAGAAAAAGAGAGAAGAAGCAAAAGCTGCTGCAGCTGCTAGGATTCAAGCTAAGCTAGACGCTAAGAAAGGTCCAGGCAAAGGAAAAGGCAAAGGCAAAGCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

190

Amino Acids

20.35

Weight (kDa)

8.39

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	34 - 118	2.8e-28	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55520 AT3G55520 AT3G55520
fragaria_vesca	FvH4_7g22820
malus_domestica	MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica	Prupe.2G238000_v2.0.a1
pyrus_communis	pycom07g18830
rosa_chinensis	RchiOBHm_Chr1g0367961
rosa_laevigata	RLG00000027253
rosa_multiflora	Rmu_co8515997.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289050
rosa_rugosa	Rorug01G0337800
rosa_samantha	Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana	Rw1G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	361
AccII	CGCG	1 cut(s)	162
AcuI	CTGAAG	3 cut(s)	153, 417, 443
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	3 cut(s)	217, 371, 545
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	43, 512
AjnI	CCWGG	2 cut(s)	407, 538
AluBI	AGCT	6 cut(s)	449, 491, 500, 515, 520, 566
AluI	AGCT	6 cut(s)	449, 491, 500, 515, 520, 566
Alw26I	GTCTC	1 cut(s)	306
ApeKI	GCWGC	7 cut(s)	443, 446, 449, 491, 494, 497, 500
Asp700I	GAANNNNTTC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	17, 72
AvaII	GGWCC	1 cut(s)	536
BbsI	GAAGAC	2 cut(s)	141, 171
BbvI	GCAGC	7 cut(s)	430, 436, 458, 478, 481, 487, 509
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	409, 540
BcnI	CCSGG	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	4 cut(s)	378, 413, 504, 521
BfmI	CTRYAG	2 cut(s)	444, 495
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	7 cut(s)	444, 447, 450, 492, 495, 498, 501
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	7 cut(s)	445, 448, 451, 493, 496, 499, 502
Bme1390I	CCNGG	3 cut(s)	298, 409, 540
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	536
BmrFI	CCNGG	3 cut(s)	298, 409, 540
BmsI	GCATC	2 cut(s)	61, 313
BpiI	GAAGAC	2 cut(s)	141, 171
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	298
Bsa29I	ATCGAT	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 371, 545
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	409, 540
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	312, 466
BseLI	CCNNNNNNNGG	3 cut(s)	217, 371, 545
BseMI	GCAATG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	7 cut(s)	430, 436, 458, 478, 481, 487, 509
Bsh1236I	CGCG	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	217, 371, 545
BsmAI	GTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	91, 418
Bsp1720I	GCTNAGC	1 cut(s)	516
Bsp68I	TCGCGA	1 cut(s)	162
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	162
BspMAI	CTGCAG	2 cut(s)	448, 499
BspQI	GCTCTTC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	2 cut(s)	91, 418
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	409, 540
Bst6I	CTCTTC	2 cut(s)	286, 393
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstDEI	CTNAG	2 cut(s)	516, 528
BstF5I	GGATG	2 cut(s)	312, 466
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	94, 421
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	2 cut(s)	91, 418
BstMWI	GCNNNNNNNGC	4 cut(s)	449, 491, 497, 500
BstNI	CCWGG	2 cut(s)	409, 540
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	3 cut(s)	296, 407, 538
BstSFI	CTRYAG	2 cut(s)	444, 495
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	7 cut(s)	430, 436, 458, 478, 481, 487, 509
BstV2I	GAAGAC	2 cut(s)	141, 171
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
Bsu15I	ATCGAT	1 cut(s)	15
BsuTUI	ATCGAT	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	312, 466
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
BtuMI	TCGCGA	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	536
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	2 cut(s)	25, 533
CviAII	CATG	2 cut(s)	238, 267
DdeI	CTNAG	2 cut(s)	516, 528
DpnI	GATC	2 cut(s)	93, 420
DpnII	GATC	2 cut(s)	91, 418
Eam1104I	CTCTTC	2 cut(s)	286, 393
EarI	CTCTTC	2 cut(s)	286, 393
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	536
Eco57I	CTGAAG	3 cut(s)	153, 417, 443
EcoRII	CCWGG	2 cut(s)	407, 538
FaeI	CATG	2 cut(s)	241, 270
FaiI	YATR	4 cut(s)	117, 239, 268, 282
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	237, 266
FblI	GTMKAC	1 cut(s)	361
Fnu4HI	GCNGC	7 cut(s)	444, 447, 450, 492, 495, 498, 501
FokI	GGATG	2 cut(s)	299, 473
Fsp4HI	GCNGC	7 cut(s)	444, 447, 450, 492, 495, 498, 501
FspBI	CTAG	4 cut(s)	378, 413, 504, 521
GluI	GCNGC	7 cut(s)	444, 447, 450, 492, 495, 498, 501
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	2 cut(s)	25, 533
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	241, 270
HinfI	GANTC	1 cut(s)	508
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	17, 72
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	3 cut(s)	88, 397, 423
Hpy188III	TCNNGA	3 cut(s)	40, 161, 308
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	235
HpyCH4V	TGCA	5 cut(s)	11, 257, 326, 446, 497
HpyF10VI	GCNNNNNNNGC	4 cut(s)	449, 491, 497, 500
HpyF3I	CTNAG	2 cut(s)	516, 528
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	241, 270
Kzo9I	GATC	2 cut(s)	91, 418
LguI	GCTCTTC	1 cut(s)	286
Lsp1109I	GCAGC	7 cut(s)	430, 436, 458, 478, 481, 487, 509
LweI	GCATC	2 cut(s)	61, 313
MaeI	CTAG	4 cut(s)	378, 413, 504, 521
MalI	GATC	2 cut(s)	93, 420
MboI	GATC	2 cut(s)	91, 418
MboII	GAAGA	8 cut(s)	86, 146, 176, 303, 410, 428, 436, 491
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	2 cut(s)	261, 347
MmeI	TCCRAC	2 cut(s)	226, 364
MnlI	CCTC	6 cut(s)	94, 112, 315, 334, 360, 451
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	449, 500
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	3 cut(s)	298, 409, 540
MvaI	CCWGG	2 cut(s)	409, 540
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	4 cut(s)	449, 491, 497, 500
NciI	CCSGG	1 cut(s)	298
NdeII	GATC	2 cut(s)	91, 418
NlaIII	CATG	2 cut(s)	241, 270
NruI	TCGCGA	1 cut(s)	162
NspI	RCATGY	1 cut(s)	270
PciI	ACATGT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	508
PkrI	GCNGC	7 cut(s)	445, 448, 451, 493, 496, 499, 502
PscI	ACATGT	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	407, 538
PspGI	CCWGG	2 cut(s)	407, 538
PspPI	GGNCC	1 cut(s)	536
PstI	CTGCAG	2 cut(s)	448, 499
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	2 cut(s)	449, 500
RruI	TCGCGA	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	7 cut(s)	444, 447, 450, 492, 495, 498, 501
Sau3AI	GATC	2 cut(s)	91, 418
Sau96I	GGNCC	1 cut(s)	536
ScrFI	CCNGG	3 cut(s)	298, 409, 540
SfaNI	GCATC	2 cut(s)	61, 313
SfcI	CTRYAG	2 cut(s)	444, 495
SinI	GGWCC	1 cut(s)	536
Sse9I	AATT	2 cut(s)	261, 347
SspMI	CTAG	4 cut(s)	378, 413, 504, 521
StyD4I	CCNGG	3 cut(s)	296, 407, 538
TaqI	TCGA	4 cut(s)	15, 105, 150, 339
TaqII	GACCGA	1 cut(s)	379
TasI	AATT	2 cut(s)	261, 347
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	7 cut(s)	443, 446, 449, 491, 494, 497, 500
TspDTI	ATGAA	2 cut(s)	101, 254
TspGWI	ACGGA	2 cut(s)	200, 303
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	536
XceI	RCATGY	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	4 cut(s)	378, 413, 504, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.