Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013413

Physical Location & Seq

Genomic Coordinates Forward (+)

17936657 .. 17940515

Gene Structure 3859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ACGAACTTCATCAGACGCCCATGGCCACCACAGCTCACAGCAACACCACCCGATTTATCATCGTCCCTATTTCGACCCGACAACCCGCTTCCCCGCCCCGAAGTTTCGGATTCTCATCCATCTCCTCGAACCAGACAATTGAAGATTGCAAGTATGAGTGATGCAATTGATTTGACTGGAGATGGAGGTGTGCTCAAGAAGGTCGTGAGGCATGCTAAACCGGATGCAACTGGTCCGACGCTGGATCTTCCTCTAGTTGATGTTCATTATGAGGGTGTTCTTGAGGAGACTGGGGAGGTGTTTGATACGACACATGAGGACAATACGATTTTCTCGTTTGAGATTGGGAAGGGCAGTGTAATCAAGGCATGGGATGTTGCACTGAGAACCATGAAGGTTGGCGAGATTGCTAAGATCACTTGCAAGCCCGAATATGCTTATGGAAGTGCAGGGTCTCCACCAGATATTCCACCAGATGCAACCCTTATATTTGAGGTGGAGTTAGTTGCCTGCAACCCACGGAAGGGTTTGAGTCTGGGTAGTGCTTCAGAGGAAAGGACTAGGCTAGAAGAACTGAAGAAGCAGAGAGAGCTTGCTGCTGCAACCAAAGAAGAAGAGAAGAAGAAGAGAGAAGATGCCAAAGCTGCTGCTGCTGCCCGTATTCAAGCTAAGTTAGATGCTAAGAAAGGAGGAAAGGGAAAAGGCAAAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

239

Amino Acids

25.83

Weight (kDa)

8.39

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	85 - 169	1.8e-29	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55520 AT3G55520 AT3G55520
fragaria_vesca	FvH4_7g22820
malus_domestica	MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica	Prupe.2G238000_v2.0.a1
pyrus_communis	pycom07g18830
rosa_chinensis	RchiOBHm_Chr1g0367961
rosa_laevigata	RLG00000027253
rosa_multiflora	Rmu_co8515997.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289050
rosa_rugosa	Rorug01G0337800
rosa_samantha	Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana	Rw1G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	86, 94
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	23
AcuI	CTGAAG	2 cut(s)	531, 596
AcyI	GRCGYC	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	523, 524
AgsI	TTSAA	2 cut(s)	142, 665
AluBI	AGCT	4 cut(s)	34, 592, 644, 668
AluI	AGCT	4 cut(s)	34, 592, 644, 668
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	281, 459
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	6 cut(s)	596, 599, 644, 647, 650, 653
AspS9I	GGNCC	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	6 cut(s)	583, 586, 631, 634, 637, 640
BccI	CCATC	2 cut(s)	127, 176
BcoDI	GTCTC	2 cut(s)	281, 459
BfaI	CTAG	3 cut(s)	254, 561, 566
BisI	GCNGC	6 cut(s)	597, 600, 645, 648, 651, 654
BlsI	GCNGC	6 cut(s)	598, 601, 646, 649, 652, 655
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	5 cut(s)	151, 214, 466, 625, 667
BmuI	ACTGGG	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	179, 302
BsaBI	GATNNNNATC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	20, 518
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 524
Bse1I	ACTGG	3 cut(s)	181, 235, 295
Bse8I	GATNNNNATC	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	20, 518
BseGI	GGATG	3 cut(s)	115, 229, 379
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	523, 524
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	3 cut(s)	181, 235, 295
BseRI	GAGGAG	2 cut(s)	114, 299
BseXI	GCAGC	6 cut(s)	583, 586, 631, 634, 637, 640
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	523, 524
BsmAI	GTCTC	2 cut(s)	281, 459
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	244, 414
Bsp19I	CCATGG	1 cut(s)	20
BspACI	CCGC	2 cut(s)	86, 94
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	375
BspPI	GGATC	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	459
BsrI	ACTGG	3 cut(s)	181, 235, 295
BssECI	CCNNGG	2 cut(s)	20, 518
BssMI	GATC	2 cut(s)	244, 414
BssNI	GRCGYC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	609, 620
BstACI	GRCGYC	1 cut(s)	16
BstC8I	GCNNGC	4 cut(s)	213, 425, 511, 594
BstDEI	CTNAG	4 cut(s)	383, 411, 669, 681
BstDSI	CCRYGG	2 cut(s)	20, 518
BstF5I	GGATG	3 cut(s)	115, 229, 379
BstKTI	GATC	2 cut(s)	247, 417
BstMAI	GTCTC	2 cut(s)	281, 459
BstMBI	GATC	2 cut(s)	244, 414
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 589, 644, 650, 653
BstNSI	RCATGY	1 cut(s)	215
BstV1I	GCAGC	6 cut(s)	583, 586, 631, 634, 637, 640
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	2 cut(s)	20, 518
BtsCI	GGATG	3 cut(s)	115, 229, 379
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	361, 380
Cac8I	GCNNGC	4 cut(s)	213, 425, 511, 594
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	2 cut(s)	24, 247
CviAII	CATG	5 cut(s)	21, 212, 314, 369, 391
CviJI	RGCY	7 cut(s)	25, 34, 427, 565, 592, 644, 668
CviKI_1	RGCY	7 cut(s)	25, 34, 427, 565, 592, 644, 668
DdeI	CTNAG	4 cut(s)	383, 411, 669, 681
DpnI	GATC	2 cut(s)	246, 416
DpnII	GATC	2 cut(s)	244, 414
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	2 cut(s)	609, 620
EarI	CTCTTC	2 cut(s)	609, 620
Eco130I	CCWWGG	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	2 cut(s)	531, 596
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	5 cut(s)	24, 215, 317, 372, 394
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	5 cut(s)	20, 211, 313, 368, 390
FauI	CCCGC	2 cut(s)	93, 101
Fnu4HI	GCNGC	6 cut(s)	597, 600, 645, 648, 651, 654
FokI	GGATG	3 cut(s)	102, 236, 386
Fsp4HI	GCNGC	6 cut(s)	597, 600, 645, 648, 651, 654
FspBI	CTAG	3 cut(s)	254, 561, 566
GluI	GCNGC	6 cut(s)	597, 600, 645, 648, 651, 654
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	2 cut(s)	24, 247
Hin1I	GRCGYC	1 cut(s)	16
Hin1II	CATG	5 cut(s)	24, 215, 317, 372, 394
HinfI	GANTC	2 cut(s)	110, 532
HpaII	CCGG	1 cut(s)	221
Hpy188I	TCNGA	4 cut(s)	14, 109, 237, 550
Hpy188III	TCNNGA	3 cut(s)	196, 205, 281
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	4 cut(s)	193, 343, 388, 517
HpyCH4V	TGCA	9 cut(s)	149, 164, 227, 380, 423, 449, 479, 513, 602
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 589, 644, 650, 653
HpyF3I	CTNAG	4 cut(s)	383, 411, 669, 681
Hsp92I	GRCGYC	1 cut(s)	16
Hsp92II	CATG	5 cut(s)	24, 215, 317, 372, 394
Kzo9I	GATC	2 cut(s)	244, 414
Lsp1109I	GCAGC	6 cut(s)	583, 586, 631, 634, 637, 640
LweI	GCATC	5 cut(s)	151, 214, 466, 625, 667
MaeI	CTAG	3 cut(s)	254, 561, 566
MalI	GATC	2 cut(s)	246, 416
MboI	GATC	2 cut(s)	244, 414
MfeI	CAATTG	2 cut(s)	137, 165
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	2 cut(s)	137, 165
MluNI	TGGCCA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	260
Mox20I	TGGCCA	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	25
Msp20I	TGGCCA	1 cut(s)	25
MspI	CCGG	1 cut(s)	221
MunI	CAATTG	2 cut(s)	137, 165
MwoI	GCNNNNNNNGC	5 cut(s)	31, 589, 644, 650, 653
NcoI	CCATGG	1 cut(s)	20
NdeII	GATC	2 cut(s)	244, 414
NlaIII	CATG	5 cut(s)	24, 215, 317, 372, 394
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	6 cut(s)	598, 601, 646, 649, 652, 655
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	244
SatI	GCNGC	6 cut(s)	597, 600, 645, 648, 651, 654
Sau3AI	GATC	2 cut(s)	244, 414
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	541
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	9 cut(s)	36, 190, 204, 300, 399, 498, 594, 646, 670
SfaNI	GCATC	5 cut(s)	151, 214, 466, 625, 667
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	194, 281
SmoI	CTYRAG	2 cut(s)	194, 281
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	137, 165
SsiI	CCGC	2 cut(s)	86, 94
SspMI	CTAG	3 cut(s)	254, 561, 566
StyI	CCWWGG	1 cut(s)	20
TaqI	TCGA	2 cut(s)	73, 127
TasI	AATT	2 cut(s)	137, 165
TfiI	GAWTC	1 cut(s)	110
TscAI	CASTG	2 cut(s)	361, 387
TseI	GCWGC	6 cut(s)	596, 599, 644, 647, 650, 653
TspDTI	ATGAA	2 cut(s)	254, 407
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	2 cut(s)	361, 387
VpaK11BI	GGWCC	1 cut(s)	233
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	3 cut(s)	254, 561, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.