Rh1BG306900

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013413
Physical Location & Seq
Forward (+)
44321047 .. 44329915
8869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG306900.1

Sequence Viewer

Length: 774 bp
ATGCGGGTGAAGGAGGAAAGCGGTGGAGGCTGGTTCATATATTCAACGCAGCTAAACTCTACACGTGGAAAGAGACGCCCATGGCCACCACAGCTCACAGCAATACGACCCGATTTATCGTCCCAATTTCAACCCGACAACCCGCTTGCCCCGCCCGAAATTTCGGAACCTCATCCACCGCCTCGAAACGGACCGTTGAAGATTGCAAGTATGAGTGATGCAATTGATTTAACTGGAGATGGAGGTGTGCTCAAGAAGATTGTAAGGCATGCCAAACCAGATGCAACTGGTCCGACGCAAGACCTTCCTCTTGTTGATGTTCATTATGAAGGGGTTCTTGAGGAAACTGGGGAAGTGTTTGATACGACTCATGAGGACAATACGATTTTCTCATTTGAGATTGGGAAGGGCAGTGTAATCAAGGCTTGGGATGTTGCACTGAGAACCATGAAGGTTGGCGAGATTGCTAAGATCACTTGCAAGCCCGAATATGCTTATGGCAGTGCAGGGTCTCCACCAGATATCCCACCAGATGCAACCCTTATATTTGAGGTGGAGTTAGTTGCCTGCAACCCACGGAAGGGATTGAGTCTGGGTAGTGCTTCAGAGGAAAGGAATAGGCTAGAAGAACTGAAGAAGCAGAGAGAGCTTGCTGCTGCAACCAAAGAGGAAGAGAAGAAGAAGAGAGAAGAGGCCAAAGCTGCCGCTGCTGCCCGTATTCAAGCTAAGTTAGATGCCAAGAAGGGAGGAAAGGGAAAAGGCAAAGGAAAATAG

Protein Analysis

257

Amino Acids

27.94

Weight (kDa)

8.37

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 104 - 188 1.4e-29 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55520 AT3G55520 AT3G55520
fragaria_vesca FvH4_7g22820
malus_domestica MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica Prupe.2G238000_v2.0.a1
pyrus_communis pycom07g18830
rosa_chinensis RchiOBHm_Chr1g0367961
rosa_laevigata RLG00000027253
rosa_multiflora Rmu_co8515997.1_g000001
rosa_roxburghii Rroxscaffold_4G00289050
rosa_rugosa Rorug01G0337800
rosa_samantha Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana Rw1G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 4, 21, 143, 152, 179, 705
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 2 cut(s) 588, 653
AcvI CACGTG 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 188, 580, 581
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 4 cut(s) 45, 131, 199, 722
AluBI AGCT 5 cut(s) 52, 94, 649, 701, 725
AluI AGCT 5 cut(s) 52, 94, 649, 701, 725
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 2 cut(s) 67, 516
AoxI GGCC 2 cut(s) 83, 693
ApeKI GCWGC 6 cut(s) 49, 653, 656, 701, 707, 710
ApoI RAATTY 1 cut(s) 159
Asp700I GAANNNNTTC 1 cut(s) 333
AspS9I GGNCC 2 cut(s) 191, 290
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 2 cut(s) 191, 290
BalI TGGCCA 1 cut(s) 85
BbrPI CACGTG 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 6 cut(s) 61, 640, 643, 688, 694, 697
BccI CCATC 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 67, 516
BfaI CTAG 1 cut(s) 623
BisI GCNGC 7 cut(s) 50, 654, 657, 702, 705, 708, 711
BlsI GCNGC 7 cut(s) 51, 655, 658, 703, 706, 709, 712
Bme18I GGWCC 2 cut(s) 191, 290
BmgT120I GGNCC 2 cut(s) 191, 290
BmiI GGNNCC 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 4 cut(s) 208, 271, 523, 724
BmuI ACTGGG 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 236, 359
BsaAI YACGTR 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 80, 575
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 580, 581
Bse1I ACTGG 3 cut(s) 238, 292, 352
BseDI CCNNGG 2 cut(s) 80, 575
BseGI GGATG 2 cut(s) 172, 436
BseLI CCNNNNNNNGG 3 cut(s) 188, 580, 581
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 3 cut(s) 238, 292, 352
BseXI GCAGC 6 cut(s) 61, 640, 643, 688, 694, 697
BsgI GTGCAG 1 cut(s) 525
BshFI GGCC 2 cut(s) 85, 695
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 3 cut(s) 188, 580, 581
BsmAI GTCTC 2 cut(s) 67, 516
BsmBI CGTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 2 cut(s) 85, 695
Bso31I GGTCTC 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 471
Bsp19I CCATGG 1 cut(s) 80
BspACI CCGC 6 cut(s) 4, 21, 143, 152, 179, 705
BspANI GGCC 2 cut(s) 85, 695
BspCNI CTCAG 1 cut(s) 432
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 516
BsrI ACTGG 3 cut(s) 238, 292, 352
BssECI CCNNGG 2 cut(s) 80, 575
BssMI GATC 1 cut(s) 471
BssNI GRCGYC 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 3 cut(s) 666, 677, 684
BstACI GRCGYC 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 5 cut(s) 147, 270, 482, 568, 651
BstDEI CTNAG 3 cut(s) 440, 468, 726
BstDSI CCRYGG 2 cut(s) 80, 575
BstF5I GGATG 2 cut(s) 172, 436
BstKTI GATC 1 cut(s) 474
BstMAI GTCTC 2 cut(s) 67, 516
BstMBI GATC 1 cut(s) 471
BstMWI GCNNNNNNNGC 7 cut(s) 27, 91, 151, 646, 701, 707, 710
BstNSI RCATGY 1 cut(s) 272
BstV1I GCAGC 6 cut(s) 61, 640, 643, 688, 694, 697
BsuRI GGCC 2 cut(s) 85, 695
BtgI CCRYGG 2 cut(s) 80, 575
BtsCI GGATG 2 cut(s) 172, 436
BtsI GCAGTG 2 cut(s) 418, 508
BtsIMutI CAGTG 3 cut(s) 418, 437, 508
Cac8I GCNNGC 5 cut(s) 147, 270, 482, 568, 651
CciI TCATGA 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 191, 290
CpoI CGGWCCG 1 cut(s) 191
CseI GACGC 2 cut(s) 84, 304
CspI CGGWCCG 1 cut(s) 191
CviAII CATG 4 cut(s) 81, 269, 371, 448
DdeI CTNAG 3 cut(s) 440, 468, 726
DpnI GATC 1 cut(s) 473
DpnII GATC 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 3 cut(s) 666, 677, 684
EarI CTCTTC 3 cut(s) 666, 677, 684
Eco130I CCWWGG 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 516
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 191, 290
Eco57I CTGAAG 2 cut(s) 588, 653
Eco72I CACGTG 1 cut(s) 65
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 4 cut(s) 84, 272, 374, 451
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 1 cut(s) 106
FatI CATG 4 cut(s) 80, 268, 370, 447
FauI CCCGC 2 cut(s) 150, 159
Fnu4HI GCNGC 7 cut(s) 50, 654, 657, 702, 705, 708, 711
FokI GGATG 2 cut(s) 159, 443
Fsp4HI GCNGC 7 cut(s) 50, 654, 657, 702, 705, 708, 711
FspBI CTAG 1 cut(s) 623
GluI GCNGC 7 cut(s) 50, 654, 657, 702, 705, 708, 711
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 2 cut(s) 85, 695
HgaI GACGC 2 cut(s) 84, 304
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 4 cut(s) 84, 272, 374, 451
HinfI GANTC 2 cut(s) 367, 589
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 166, 294, 607
Hpy188III TCNNGA 3 cut(s) 253, 338, 371
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 7 cut(s) 4, 314, 323, 400, 445, 574, 736
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 9 cut(s) 206, 221, 284, 437, 480, 506, 536, 570, 659
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 91, 151, 646, 701, 707, 710
HpyF3I CTNAG 3 cut(s) 440, 468, 726
HpySE526I ACGT 1 cut(s) 64
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 4 cut(s) 84, 272, 374, 451
Kzo9I GATC 1 cut(s) 471
Lsp1109I GCAGC 6 cut(s) 61, 640, 643, 688, 694, 697
LweI GCATC 4 cut(s) 208, 271, 523, 724
MaeI CTAG 1 cut(s) 623
MaeII ACGT 1 cut(s) 64
MalI GATC 1 cut(s) 473
MboI GATC 1 cut(s) 471
MboII GAAGA 9 cut(s) 211, 268, 638, 646, 683, 688, 691, 694, 701
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 3 cut(s) 125, 159, 222
MluNI TGGCCA 1 cut(s) 85
MlyI GAGTC 2 cut(s) 361, 598
MmeI TCCRAC 1 cut(s) 317
Mox20I TGGCCA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 333
MscI TGGCCA 1 cut(s) 85
MseI TTAA 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 707
MunI CAATTG 1 cut(s) 222
MwoI GCNNNNNNNGC 7 cut(s) 27, 91, 151, 646, 701, 707, 710
NcoI CCATGG 1 cut(s) 80
NdeII GATC 1 cut(s) 471
NlaIII CATG 4 cut(s) 84, 272, 374, 451
NlaIV GGNNCC 1 cut(s) 168
NspI RCATGY 1 cut(s) 272
PaeI GCATGC 1 cut(s) 272
PagI TCATGA 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 333
PkrI GCNGC 7 cut(s) 51, 655, 658, 703, 706, 709, 712
PleI GAGTC 2 cut(s) 361, 597
PmaCI CACGTG 1 cut(s) 65
PmlI CACGTG 1 cut(s) 65
PpsI GAGTC 2 cut(s) 361, 597
Ppu21I YACGTR 1 cut(s) 65
PspCI CACGTG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 191, 290
Rsr2I CGGWCCG 1 cut(s) 191
RsrII CGGWCCG 1 cut(s) 191
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 7 cut(s) 50, 654, 657, 702, 705, 708, 711
Sau3AI GATC 1 cut(s) 471
Sau96I GGNCC 2 cut(s) 191, 290
SchI GAGTC 2 cut(s) 361, 598
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 4 cut(s) 208, 271, 523, 724
SinI GGWCC 2 cut(s) 191, 290
SmlI CTYRAG 2 cut(s) 251, 338
SmoI CTYRAG 2 cut(s) 251, 338
SphI GCATGC 1 cut(s) 272
Sse9I AATT 3 cut(s) 125, 159, 222
SsiI CCGC 6 cut(s) 4, 21, 143, 152, 179, 705
SspMI CTAG 1 cut(s) 623
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 125, 159, 222
TauI GCSGC 1 cut(s) 707
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 3 cut(s) 418, 444, 508
TseI GCWGC 6 cut(s) 49, 653, 656, 701, 707, 710
TspDTI ATGAA 4 cut(s) 25, 311, 342, 464
TspGWI ACGGA 2 cut(s) 204, 592
TspRI CASTG 3 cut(s) 418, 444, 508
VpaK11BI GGWCC 2 cut(s) 191, 290
XapI RAATTY 1 cut(s) 159
XceI RCATGY 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.