Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013413

Physical Location & Seq

Genomic Coordinates Forward (+)

21235669 .. 21237992

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18830.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTTAATTACAAAAAAAATTAATTTAATTGATCTCTCTAACATTAATCGTGGTACGGTAAAAACTTTGACATCTGCTGAATCACACGCTACACGTGCGCGTGGGAATTTCATTATCATCATCGAGTCATCGTTATATAAAGACGCCATCTTTCCGCGTCGAGTGCATCCTTCATCAGACGCCGATGGCCACCGAAGCTCCCGGCTATACCACCCGATTTATCGTCTCCCTTTCAACCCGACGACCCGATTGCCCCTCTCCGTTTCCGAAGCTCCTTTATCGCCTCGAAACGGAACATTGAAGATTGCAACTGCTGCAGCCATGAGTGATGCAATTGATTTATCCGGGGATGGCGGTGTTCTCAAGAAAATTGTAAGGCGTGCAAAGCCAGATGCAATTGCTCCGACCCAAGACCTTCCGCTCGTTGATGTTCATTATGAAGGCATTCTTGAGGAAACCGGCGAAGTCTTTGACACGACGCACGAAGATAATACAATATTCTCATTTGAGATTGGGAAGGGCAGTGTGATCAAGGCTTGGGATATTGCAGTGAAAACCATGAAGGTTGGGGAGATTGCTAAGATCACTTGCAAGCCAGAATACGCCTATGGAAGTGCTGGTTCTCCACCAGATATCCCACCCGGTGCAACCCTTGTATTTGAAGTGGAGTTAGTTGCTTGCAATCCGCGGAAGGGATTAAGTTTGGGTAGTGCTTCAGAGGAAAGGGCTAGGCTAGAAGAACTGAAGAAACAGAGGGAGTTAGTTGCTGCAAACAAAGAGGAAGAGAAGAAGAAGAGAGAAGAGGCCAAAGCTGCTGCCGCTGCTCGTATTCAAGCAAAGTTAGATGCCAAGAAGGGCGGAGGAAAGGGAAAAGGGAAAGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

296

Amino Acids

31.95

Weight (kDa)

9.36

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55520 AT3G55520 AT3G55520
fragaria_vesca	FvH4_7g22820
malus_domestica	MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica	Prupe.2G238000_v2.0.a1
pyrus_communis	pycom07g18830
rosa_chinensis	RchiOBHm_Chr1g0367961
rosa_laevigata	RLG00000027253
rosa_multiflora	Rmu_co8515997.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289050
rosa_rugosa	Rorug01G0337800
rosa_samantha	Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana	Rw1G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	421
AccII	CGCG	3 cut(s)	100, 157, 688
AciI	CCGC	7 cut(s)	155, 354, 419, 686, 688, 819, 858
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	2 cut(s)	699, 764
AcvI	CACGTG	1 cut(s)	95
AcyI	GRCGYC	2 cut(s)	144, 180
AdeI	CACNNNGTG	1 cut(s)	644
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	290, 692
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	235, 301, 662, 833
AluBI	AGCT	3 cut(s)	198, 272, 812
AluI	AGCT	3 cut(s)	198, 272, 812
Alw26I	GTCTC	1 cut(s)	230
AoxI	GGCC	2 cut(s)	187, 804
ApeKI	GCWGC	6 cut(s)	314, 317, 767, 812, 815, 821
ApoI	RAATTY	1 cut(s)	106
AseI	ATTAAT	2 cut(s)	21, 45
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	100
AsuC2I	CCSGG	3 cut(s)	202, 346, 642
BalI	TGGCCA	1 cut(s)	189
BbrPI	CACGTG	1 cut(s)	95
BbvI	GCAGC	6 cut(s)	301, 329, 754, 799, 802, 808
BccI	CCATC	3 cut(s)	155, 179, 344
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	3 cut(s)	202, 346, 642
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	2 cut(s)	729, 734
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	7 cut(s)	315, 318, 768, 813, 816, 819, 822
BlsI	GCNGC	7 cut(s)	316, 319, 769, 814, 817, 820, 823
Bme1390I	CCNGG	3 cut(s)	202, 346, 642
BmrFI	CCNGG	3 cut(s)	202, 346, 642
BmsI	GCATC	4 cut(s)	175, 319, 382, 835
BpuEI	CTTGAG	2 cut(s)	347, 470
BpuMI	CCSGG	3 cut(s)	202, 346, 642
BsaAI	YACGTR	1 cut(s)	95
BsaHI	GRCGYC	2 cut(s)	144, 180
BsaJI	CCNNGG	2 cut(s)	345, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 692
Bse118I	RCCGGY	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	345, 686
BseGI	GGATG	2 cut(s)	166, 355
BseLI	CCNNNNNNNGG	2 cut(s)	290, 692
BseXI	GCAGC	6 cut(s)	301, 329, 754, 799, 802, 808
Bsh1236I	CGCG	3 cut(s)	100, 157, 688
BshFI	GGCC	2 cut(s)	189, 806
BsiSI	CCGG	4 cut(s)	202, 345, 459, 642
BslI	CCNNNNNNNGG	2 cut(s)	290, 692
BsmAI	GTCTC	1 cut(s)	230
BsmBI	CGTCTC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	189, 806
Bsp143I	GATC	3 cut(s)	31, 528, 582
BspACI	CCGC	7 cut(s)	155, 354, 419, 686, 688, 819, 858
BspANI	GGCC	2 cut(s)	189, 806
BspFNI	CGCG	3 cut(s)	100, 157, 688
BspMAI	CTGCAG	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	345, 686
BssMI	GATC	3 cut(s)	31, 528, 582
BssNI	GRCGYC	2 cut(s)	144, 180
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	3 cut(s)	777, 788, 795
BstACI	GRCGYC	2 cut(s)	144, 180
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	3 cut(s)	381, 593, 679
BstDEI	CTNAG	1 cut(s)	579
BstDSI	CCRYGG	1 cut(s)	686
BstF5I	GGATG	2 cut(s)	166, 355
BstFNI	CGCG	3 cut(s)	100, 157, 688
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	3 cut(s)	34, 531, 585
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	3 cut(s)	31, 528, 582
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 163, 195, 314, 385, 812, 818, 821
BstSCI	CCNGG	3 cut(s)	200, 344, 640
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	3 cut(s)	100, 157, 688
BstV1I	GCAGC	6 cut(s)	301, 329, 754, 799, 802, 808
BsuRI	GGCC	2 cut(s)	189, 806
BtgI	CCRYGG	1 cut(s)	686
BtsCI	GGATG	2 cut(s)	166, 355
BtsI	GCAGTG	2 cut(s)	529, 555
BtsIMutI	CAGTG	2 cut(s)	529, 555
Cac8I	GCNNGC	3 cut(s)	381, 593, 679
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	458
Cfr42I	CCGCGG	1 cut(s)	689
CseI	GACGC	4 cut(s)	146, 152, 188, 487
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	2 cut(s)	322, 559
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	1 cut(s)	579
DpnI	GATC	3 cut(s)	33, 530, 584
DpnII	GATC	3 cut(s)	31, 528, 582
DraIII	CACNNNGTG	1 cut(s)	644
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	3 cut(s)	777, 788, 795
EarI	CTCTTC	3 cut(s)	777, 788, 795
EciI	GGCGGA	1 cut(s)	873
Eco32I	GATATC	1 cut(s)	634
Eco57I	CTGAAG	2 cut(s)	699, 764
Eco72I	CACGTG	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	634
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	325, 562
FaiI	YATR	7 cut(s)	136, 138, 208, 323, 438, 560, 609
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FatI	CATG	2 cut(s)	321, 558
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	7 cut(s)	315, 318, 768, 813, 816, 819, 822
FokI	GGATG	2 cut(s)	153, 362
Fsp4HI	GCNGC	7 cut(s)	315, 318, 768, 813, 816, 819, 822
FspBI	CTAG	2 cut(s)	729, 734
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	7 cut(s)	315, 318, 768, 813, 816, 819, 822
HaeIII	GGCC	2 cut(s)	189, 806
HapII	CCGG	4 cut(s)	202, 345, 459, 642
HgaI	GACGC	4 cut(s)	146, 152, 188, 487
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	2 cut(s)	144, 180
Hin1II	CATG	2 cut(s)	325, 562
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	2 cut(s)	80, 125
HpaII	CCGG	4 cut(s)	202, 345, 459, 642
Hpy188I	TCNGA	4 cut(s)	178, 268, 405, 718
Hpy188III	TCNNGA	2 cut(s)	364, 449
Hpy99I	CGWCG	3 cut(s)	162, 244, 481
HpyAV	CCTTC	7 cut(s)	180, 425, 434, 511, 556, 685, 847
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 163, 195, 314, 385, 812, 818, 821
HpyF3I	CTNAG	1 cut(s)	579
HpySE526I	ACGT	1 cut(s)	94
Hsp92I	GRCGYC	2 cut(s)	144, 180
Hsp92II	CATG	2 cut(s)	325, 562
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	528
KspI	CCGCGG	1 cut(s)	689
Kzo9I	GATC	3 cut(s)	31, 528, 582
LmnI	GCTCC	3 cut(s)	203, 277, 406
LpnPI	CCDG	8 cut(s)	215, 358, 402, 472, 603, 609, 642, 655
Lsp1109I	GCAGC	6 cut(s)	301, 329, 754, 799, 802, 808
LweI	GCATC	4 cut(s)	175, 319, 382, 835
MaeI	CTAG	2 cut(s)	729, 734
MaeII	ACGT	1 cut(s)	94
MalI	GATC	3 cut(s)	33, 530, 584
MbiI	CCGCTC	1 cut(s)	421
MboI	GATC	3 cut(s)	31, 528, 582
MboII	GAAGA	9 cut(s)	313, 497, 749, 757, 794, 799, 802, 805, 812
MfeI	CAATTG	2 cut(s)	333, 396
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	8 cut(s)	6, 18, 22, 27, 106, 333, 369, 396
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	8 cut(s)	266, 294, 445, 712, 747, 772, 796, 854
Mox20I	TGGCCA	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	5 cut(s)	5, 21, 26, 45, 698
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	2 cut(s)	688, 821
MspI	CCGG	4 cut(s)	202, 345, 459, 642
MspR9I	CCNGG	3 cut(s)	202, 346, 642
MunI	CAATTG	2 cut(s)	333, 396
Mva1269I	GAATGC	1 cut(s)	444
MvnI	CGCG	3 cut(s)	100, 157, 688
MwoI	GCNNNNNNNGC	8 cut(s)	95, 163, 195, 314, 385, 812, 818, 821
NciI	CCSGG	3 cut(s)	202, 346, 642
NdeII	GATC	3 cut(s)	31, 528, 582
NlaIII	CATG	2 cut(s)	325, 562
PctI	GAATGC	1 cut(s)	444
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	7 cut(s)	316, 319, 769, 814, 817, 820, 823
PleI	GAGTC	1 cut(s)	133
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	95
PshBI	ATTAAT	2 cut(s)	21, 45
PspCI	CACGTG	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SacII	CCGCGG	1 cut(s)	689
SaqAI	TTAA	5 cut(s)	5, 21, 26, 45, 698
SatI	GCNGC	7 cut(s)	315, 318, 768, 813, 816, 819, 822
Sau3AI	GATC	3 cut(s)	31, 528, 582
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	3 cut(s)	202, 346, 642
SetI	ASST	6 cut(s)	97, 200, 274, 417, 567, 814
SfaNI	GCATC	4 cut(s)	175, 319, 382, 835
SfcI	CTRYAG	1 cut(s)	315
Sfr303I	CCGCGG	1 cut(s)	689
SgrBI	CCGCGG	1 cut(s)	689
SmlI	CTYRAG	2 cut(s)	362, 449
SmoI	CTYRAG	2 cut(s)	362, 449
Sse9I	AATT	8 cut(s)	6, 18, 22, 27, 106, 333, 369, 396
SsiI	CCGC	7 cut(s)	155, 354, 419, 686, 688, 819, 858
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	2 cut(s)	729, 734
StyD4I	CCNGG	3 cut(s)	200, 344, 640
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	3 cut(s)	123, 160, 286
TasI	AATT	8 cut(s)	6, 18, 22, 27, 106, 333, 369, 396
TauI	GCSGC	1 cut(s)	821
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	5 cut(s)	5, 21, 26, 45, 698
Tru9I	TTAA	5 cut(s)	5, 21, 26, 45, 698
TscAI	CASTG	2 cut(s)	529, 555
TseI	GCWGC	6 cut(s)	314, 317, 767, 812, 815, 821
TspDTI	ATGAA	5 cut(s)	100, 162, 422, 453, 575
TspGWI	ACGGA	2 cut(s)	250, 306
TspRI	CASTG	2 cut(s)	529, 555
VspI	ATTAAT	2 cut(s)	21, 45
XapI	RAATTY	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	2 cut(s)	729, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.