Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013413

Physical Location & Seq

Genomic Coordinates Forward (+)

58082527 .. 58085383

Gene Structure 2857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG344600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAATCATTGACACGGGTGCGCGTGTGGGATATCCTCGAAGCATCGGACTATAAAACGCAAAAAGGCTTTCTCGTGTCTTCTTCACAAACTTCATCGGACGCCGATGGCCACCACAGCTCACAGCAATACGACCCGATTTATCGTCCCAATTTCAACCCGACAACCCGCTTGCCCCGCCCCGAAATTTCGGAACCTCATCCGCCGCATCGAAACGGACCATTGAAGATTGCAAGTATGAGTGATGCAATTGATTTAACTGGAGATGGAGGTGTGCTCAAGAAAATCGTAAGGCATGCCAAACCAGATGCAACTGGTCCGACGCAAGACCTTCCTCTTGTTGATGTTCATTATGAAGGGGTTCTTGAGGAAACTGGGGAAGTGTTTGATACGACTCATGAGGACAATACGATTTTCTCATTTGAGATTGGGAAGGGCAGTGTAATCAAGGCTTGGGATGTTGCACTGAGAACCATGAAGGTTGGCGAGATTGCTAAGATCACTTGCAAGCCCGAATATGCTTATGGCAGTGCAGGGTCTCCACCAGATATCCCACCAGATGCAACCCTTATATTTGAAGTCGAGTTAGTTGCCTGCAACCCACGGAAGGGATTGAGTCTGGGTAGTGCTTCAGAGGAAAGGAATAGGCTAGAAGAACTGAAGAAGCAGAGAGAGCTTGCTGCTGCAACCAAAGAGGAAGAGAAGAAGAAGAGGGAAGAGGCCAAAGCTGCCGCTGCTTCCCGCATTCAAGCCAAGTTAGATGCCAAGAAGGGAGGAAAGGGAAAAGGCAAAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

266

Amino Acids

29.1

Weight (kDa)

7.74

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	113 - 197	1.5e-29	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55520 AT3G55520 AT3G55520
fragaria_vesca	FvH4_7g22820
malus_domestica	MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica	Prupe.2G238000_v2.0.a1
pyrus_communis	pycom07g18830
rosa_chinensis	RchiOBHm_Chr1g0367961
rosa_laevigata	RLG00000027253
rosa_multiflora	Rmu_co8515997.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289050
rosa_rugosa	Rorug01G0337800
rosa_samantha	Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana	Rw1G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	24
AciI	CCGC	6 cut(s)	169, 178, 203, 206, 732, 742
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	186
AcuI	CTGAAG	2 cut(s)	615, 680
AcyI	GRCGYC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	607, 608
AgsI	TTSAA	4 cut(s)	157, 226, 578, 749
AluBI	AGCT	3 cut(s)	120, 676, 728
AluI	AGCT	3 cut(s)	120, 676, 728
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	543
AoxI	GGCC	2 cut(s)	109, 720
ApeKI	GCWGC	4 cut(s)	680, 683, 728, 734
ApoI	RAATTY	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	218, 317
AvaII	GGWCC	2 cut(s)	218, 317
BalI	TGGCCA	1 cut(s)	111
BauI	CACGAG	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	667, 670, 715, 721
BccI	CCATC	2 cut(s)	101, 260
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	1 cut(s)	650
BisI	GCNGC	6 cut(s)	206, 681, 684, 729, 732, 735
BlsI	GCNGC	6 cut(s)	207, 682, 685, 730, 733, 736
Bme18I	GGWCC	2 cut(s)	218, 317
BmgT120I	GGNCC	2 cut(s)	218, 317
BmiI	GGNNCC	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	6 cut(s)	53, 217, 235, 298, 550, 751
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	2 cut(s)	263, 386
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 608
Bse1I	ACTGG	3 cut(s)	265, 319, 379
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	2 cut(s)	199, 463
BseLI	CCNNNNNNNGG	2 cut(s)	607, 608
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	3 cut(s)	265, 319, 379
BseXI	GCAGC	4 cut(s)	667, 670, 715, 721
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	111, 722
BsiHKAI	GWGCWC	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	607, 608
BsmAI	GTCTC	1 cut(s)	543
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	2 cut(s)	111, 722
Bso31I	GGTCTC	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	498
BspACI	CCGC	6 cut(s)	169, 178, 203, 206, 732, 742
BspANI	GGCC	2 cut(s)	111, 722
BspCNI	CTCAG	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	265, 319, 379
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	1 cut(s)	498
BssNI	GRCGYC	1 cut(s)	102
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst6I	CTCTTC	3 cut(s)	693, 704, 711
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	5 cut(s)	173, 297, 509, 595, 678
BstDEI	CTNAG	2 cut(s)	467, 495
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	2 cut(s)	199, 463
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	501
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 177, 673, 728, 734
BstNSI	RCATGY	1 cut(s)	299
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	4 cut(s)	667, 670, 715, 721
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	111, 722
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	2 cut(s)	199, 463
BtsI	GCAGTG	2 cut(s)	445, 535
BtsIMutI	CAGTG	3 cut(s)	445, 464, 535
Cac8I	GCNNGC	5 cut(s)	173, 297, 509, 595, 678
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	218, 317
CseI	GACGC	2 cut(s)	110, 331
CviAII	CATG	3 cut(s)	296, 398, 475
DdeI	CTNAG	2 cut(s)	467, 495
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	3 cut(s)	693, 704, 711
EarI	CTCTTC	3 cut(s)	693, 704, 711
EciI	GGCGGA	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	543
Eco32I	GATATC	2 cut(s)	34, 550
Eco47I	GGWCC	2 cut(s)	218, 317
Eco57I	CTGAAG	2 cut(s)	615, 680
EcoRV	GATATC	2 cut(s)	34, 550
FaeI	CATG	3 cut(s)	299, 401, 478
FaiI	YATR	9 cut(s)	54, 239, 297, 354, 399, 476, 519, 525, 572
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	295, 397, 474
FauI	CCCGC	3 cut(s)	176, 185, 749
Fnu4HI	GCNGC	6 cut(s)	206, 681, 684, 729, 732, 735
FokI	GGATG	2 cut(s)	186, 470
Fsp4HI	GCNGC	6 cut(s)	206, 681, 684, 729, 732, 735
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	6 cut(s)	206, 681, 684, 729, 732, 735
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	111, 722
HgaI	GACGC	2 cut(s)	110, 331
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	299, 401, 478
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	394, 616
Hpy188I	TCNGA	5 cut(s)	49, 100, 193, 321, 634
Hpy188III	TCNNGA	3 cut(s)	280, 365, 398
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	6 cut(s)	341, 350, 427, 472, 601, 763
HpyCH4V	TGCA	9 cut(s)	233, 248, 311, 464, 507, 533, 563, 597, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 177, 673, 728, 734
HpyF3I	CTNAG	2 cut(s)	467, 495
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	299, 401, 478
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	498
LpnPI	CCDG	9 cut(s)	246, 300, 318, 360, 519, 558, 570, 605, 607
Lsp1109I	GCAGC	4 cut(s)	667, 670, 715, 721
LweI	GCATC	6 cut(s)	53, 217, 235, 298, 550, 751
MaeI	CTAG	1 cut(s)	650
MalI	GATC	1 cut(s)	500
MboI	GATC	1 cut(s)	498
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	3 cut(s)	151, 186, 249
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	2 cut(s)	388, 625
MmeI	TCCRAC	1 cut(s)	344
Mox20I	TGGCCA	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	734
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	744
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	5 cut(s)	117, 177, 673, 728, 734
NdeII	GATC	1 cut(s)	498
NlaIII	CATG	3 cut(s)	299, 401, 478
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	299
PaeI	GCATGC	1 cut(s)	299
PagI	TCATGA	1 cut(s)	397
PctI	GAATGC	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	360
PkrI	GCNGC	6 cut(s)	207, 682, 685, 730, 733, 736
PleI	GAGTC	2 cut(s)	388, 624
PpsI	GAGTC	2 cut(s)	388, 624
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	218, 317
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	6 cut(s)	206, 681, 684, 729, 732, 735
Sau3AI	GATC	1 cut(s)	498
Sau96I	GGNCC	2 cut(s)	218, 317
SchI	GAGTC	2 cut(s)	388, 625
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	7 cut(s)	122, 199, 274, 333, 483, 678, 730
SfaNI	GCATC	6 cut(s)	53, 217, 235, 298, 550, 751
SinI	GGWCC	2 cut(s)	218, 317
SmlI	CTYRAG	2 cut(s)	278, 365
SmoI	CTYRAG	2 cut(s)	278, 365
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	3 cut(s)	151, 186, 249
SsiI	CCGC	6 cut(s)	169, 178, 203, 206, 732, 742
SspMI	CTAG	1 cut(s)	650
TaqI	TCGA	3 cut(s)	39, 211, 582
TasI	AATT	3 cut(s)	151, 186, 249
TauI	GCSGC	2 cut(s)	208, 734
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	3 cut(s)	445, 471, 535
TseI	GCWGC	4 cut(s)	680, 683, 728, 734
TspDTI	ATGAA	5 cut(s)	17, 84, 338, 369, 491
TspGWI	ACGGA	2 cut(s)	231, 619
TspRI	CASTG	3 cut(s)	445, 471, 535
VpaK11BI	GGWCC	2 cut(s)	218, 317
XapI	RAATTY	1 cut(s)	186
XceI	RCATGY	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.