Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013413

Physical Location & Seq

Genomic Coordinates Forward (+)

24576955 .. 24579524

Gene Structure 2570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1136400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCCACCGAAGCTCCCGACTATACCACCCGATTTATCGTCCCCGTTTCAACCCGACAACCCAATTGCTCCACTCCGTTTTCGAAGCTCCTATATCGCGTCGAAACGGGTCAAAAGTTGAAGATTGCAAGTGCTGCAGCCATGACTGATGCAATTGATTTATCTGGGGATGGCGGTGTTCTCAAGAAAATTGTAAGGCATGCAAAACCAGATGCAGCTACCCCGACCCAAGACCTTCCGCTCGTTGATGTTCATTATGAAGGCATTCTTGAGGAAACCGGCGAAGTCTTTGACACGACGCACGAAGATAATACAATTTTCTCATTTGAGGTTGGGAAAGGCAGTGTGATCAAGGCTTGGGATATTGCAGTGAAAACCATGAAGGTTGGGGAGATTGCTAAGATCACTTGCAAGCCAGAATATGCCTATGGTAGTGCGGGTTCTCCACCAGATATTCCACCAGATGCAACCCTTGTATTTGAGGTGGAGTTAGTTGCTTGCAATCCTCGGAAGGGATTAAGTTTGGGTAGTGCTTCAGAGGAAAGGGCTAGGCTAGAAGAGCTGAAGAAACAGAGGGAGTTAGCTGCTGCAAACAAAGAGGAAGAGAAGAAGAAGAGAGAAGAGGCGAAAGCTGCAGCTGCCGCTCGTATTCAAGCCAAGTTGGATGCCAAGAAGGGCGGAGGAAAGGGAAAAGCAAAAGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

236

Amino Acids

25.3

Weight (kDa)

8.28

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	80 - 165	5.8e-30	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55520 AT3G55520 AT3G55520
fragaria_vesca	FvH4_7g22820
malus_domestica	MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica	Prupe.2G238000_v2.0.a1
pyrus_communis	pycom07g18830
rosa_chinensis	RchiOBHm_Chr1g0367961
rosa_laevigata	RLG00000027253
rosa_multiflora	Rmu_co8515997.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289050
rosa_rugosa	Rorug01G0337800
rosa_samantha	Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana	Rw1G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	241, 644
AccII	CGCG	1 cut(s)	99
AciI	CCGC	5 cut(s)	174, 239, 437, 642, 678
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	519, 584
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgsI	TTSAA	3 cut(s)	51, 121, 653
AluBI	AGCT	7 cut(s)	14, 88, 218, 562, 584, 632, 638
AluI	AGCT	7 cut(s)	14, 88, 218, 562, 584, 632, 638
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	8 cut(s)	134, 137, 215, 584, 587, 632, 635, 638
Asp700I	GAANNNNTTC	1 cut(s)	264
AsuII	TTCGAA	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	8 cut(s)	121, 149, 227, 571, 574, 619, 625, 647
BccI	CCATC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	348
BfaI	CTAG	2 cut(s)	549, 554
BfmI	CTRYAG	2 cut(s)	135, 633
BisI	GCNGC	9 cut(s)	135, 138, 216, 585, 588, 633, 636, 639, 642
BlsI	GCNGC	9 cut(s)	136, 139, 217, 586, 589, 634, 637, 640, 643
BmsI	GCATC	4 cut(s)	139, 202, 454, 655
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	2 cut(s)	167, 290
BsaJI	CCNNGG	1 cut(s)	506
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse118I	RCCGGY	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	2 cut(s)	175, 670
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseXI	GCAGC	8 cut(s)	121, 149, 227, 571, 574, 619, 625, 647
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	348, 402
BspACI	CCGC	5 cut(s)	174, 239, 437, 642, 678
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	99
BspMAI	CTGCAG	2 cut(s)	139, 637
BspQI	GCTCTTC	1 cut(s)	552
BspT104I	TTCGAA	1 cut(s)	83
BsrBI	CCGCTC	2 cut(s)	241, 644
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	506
BssMI	GATC	2 cut(s)	348, 402
Bst6I	CTCTTC	4 cut(s)	552, 597, 608, 615
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	201, 413, 499
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	175, 670
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	351, 405
BstMBI	GATC	2 cut(s)	348, 402
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 134, 559, 632, 638, 641
BstNSI	RCATGY	1 cut(s)	203
BstSFI	CTRYAG	2 cut(s)	135, 633
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	8 cut(s)	121, 149, 227, 571, 574, 619, 625, 647
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	175, 670
BtsI	GCAGTG	2 cut(s)	349, 375
BtsIMutI	CAGTG	2 cut(s)	349, 375
Cac8I	GCNNGC	3 cut(s)	201, 413, 499
Cfr10I	RCCGGY	1 cut(s)	278
CseI	GACGC	2 cut(s)	88, 307
CviAII	CATG	3 cut(s)	142, 200, 379
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	350, 404
DpnII	GATC	2 cut(s)	348, 402
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	552, 597, 608, 615
EarI	CTCTTC	4 cut(s)	552, 597, 608, 615
EciI	GGCGGA	1 cut(s)	693
Eco57I	CTGAAG	2 cut(s)	519, 584
FaeI	CATG	3 cut(s)	145, 203, 382
FaiI	YATR	8 cut(s)	24, 94, 143, 201, 258, 380, 423, 429
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	3 cut(s)	141, 199, 378
FauI	CCCGC	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	9 cut(s)	135, 138, 216, 585, 588, 633, 636, 639, 642
FokI	GGATG	2 cut(s)	182, 677
Fsp4HI	GCNGC	9 cut(s)	135, 138, 216, 585, 588, 633, 636, 639, 642
FspBI	CTAG	2 cut(s)	549, 554
GluI	GCNGC	9 cut(s)	135, 138, 216, 585, 588, 633, 636, 639, 642
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	2 cut(s)	88, 307
Hin1II	CATG	3 cut(s)	145, 203, 382
HpaII	CCGG	1 cut(s)	279
Hpy188I	TCNGA	2 cut(s)	510, 538
Hpy188III	TCNNGA	3 cut(s)	17, 184, 269
Hpy99I	CGWCG	2 cut(s)	104, 301
HpyAV	CCTTC	5 cut(s)	245, 254, 376, 505, 667
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 134, 559, 632, 638, 641
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	145, 203, 382
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	348, 402
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	3 cut(s)	19, 74, 93
LpnPI	CCDG	6 cut(s)	150, 222, 292, 429, 462, 474
Lsp1109I	GCAGC	8 cut(s)	121, 149, 227, 571, 574, 619, 625, 647
LweI	GCATC	4 cut(s)	139, 202, 454, 655
MaeI	CTAG	2 cut(s)	549, 554
MalI	GATC	2 cut(s)	350, 404
MbiI	CCGCTC	2 cut(s)	241, 644
MboI	GATC	2 cut(s)	348, 402
MboII	GAAGA	9 cut(s)	133, 317, 569, 577, 614, 619, 622, 625, 632
MfeI	CAATTG	2 cut(s)	64, 153
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	64, 153, 189, 315
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	9 cut(s)	265, 322, 475, 516, 532, 567, 592, 616, 674
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	1 cut(s)	279
MunI	CAATTG	2 cut(s)	64, 153
Mva1269I	GAATGC	1 cut(s)	264
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	6 cut(s)	11, 134, 559, 632, 638, 641
NdeII	GATC	2 cut(s)	348, 402
NlaIII	CATG	3 cut(s)	145, 203, 382
NspI	RCATGY	1 cut(s)	203
NspV	TTCGAA	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	552
PctI	GAATGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	264
PkrI	GCNGC	9 cut(s)	136, 139, 217, 586, 589, 634, 637, 640, 643
PsrI	GAACNNNNNNTAC	2 cut(s)	424, 456
PstI	CTGCAG	2 cut(s)	139, 637
PvuII	CAGCTG	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	9 cut(s)	135, 138, 216, 585, 588, 633, 636, 639, 642
Sau3AI	GATC	2 cut(s)	348, 402
SfaNI	GCATC	4 cut(s)	139, 202, 454, 655
SfcI	CTRYAG	2 cut(s)	135, 633
SfuI	TTCGAA	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	182, 269
SmoI	CTYRAG	2 cut(s)	182, 269
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	4 cut(s)	64, 153, 189, 315
SsiI	CCGC	5 cut(s)	174, 239, 437, 642, 678
SspMI	CTAG	2 cut(s)	549, 554
TaqI	TCGA	2 cut(s)	83, 102
TasI	AATT	4 cut(s)	64, 153, 189, 315
TauI	GCSGC	1 cut(s)	644
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	2 cut(s)	349, 375
TseI	GCWGC	8 cut(s)	134, 137, 215, 584, 587, 632, 635, 638
TspDTI	ATGAA	3 cut(s)	242, 273, 395
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	349, 375
XceI	RCATGY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	2 cut(s)	549, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.