Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013413

Physical Location & Seq

Genomic Coordinates Forward (+)

27954515 .. 27956859

Gene Structure 2345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1201400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCCACCGAAGCTCCCGGCTATACCACCCGATTTATCGTCTCCCTTTCAACCCGACGACCCGATTGCCCCTCTCCGTTTCCGAAGCTCCTTTATCGCCTCGAAACGGGTCAAACATTGAAGATTGCAACTGCTGCAGCCATGAGTGATGCAATTGATTTATCCGGGGATGGCGGTGTTCTCAAGAAAATTGTAAGGCGTGCAAAGCCAGATGCAATTGCTCCGACCCAAGACCTTCCGCTCGTTGATGTTCATTATGAAGGCATTCTTGAGGAAACCGGCGAAGTCTTTGACACGACGCACGAAGATAATACAATATTCTCATTTGAGATTGGGAAAGGCAGTGTGATCAAGGCTTGGGATATTGCAGTGAAAACCATGAAGGTTGGGGAGATTGCTAAGATCACTTGCAAGCCAGAATACGGCTATGGAAGTGCTGGTTCTCCGCCAGATATCCCACCCGGTGCAACCCTTGTATTTGAAGTGGAGTTAGTTGCTTGCAATCCGCGGAAGGGATTAAGTTTGGGTAGTGCTTCAGAGGAAAGGGCTAGGCTAGAAGAACTGAAGAAACAGAGGGAGTTAGTTGCTGCAAACAAAGAGGAAGAGAAGAAGAAGAGAGAAGAGGCCAAAGCTGCTGCCGCCGCTCGTATTCAAGCAAAGTTAGATGCCAAGAAGGGCGGAGGAAAGGGAAAAGGGAAAGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

236

Amino Acids

25.25

Weight (kDa)

8.8

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	81 - 165	1.7e-29	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55520 AT3G55520 AT3G55520
fragaria_vesca	FvH4_7g22820
malus_domestica	MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica	Prupe.2G238000_v2.0.a1
pyrus_communis	pycom07g18830
rosa_chinensis	RchiOBHm_Chr1g0367961
rosa_laevigata	RLG00000027253
rosa_multiflora	Rmu_co8515997.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289050
rosa_rugosa	Rorug01G0337800
rosa_samantha	Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana	Rw1G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	241, 644
AccII	CGCG	1 cut(s)	508
AciI	CCGC	8 cut(s)	174, 239, 446, 506, 508, 639, 642, 678
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	519, 584
AdeI	CACNNNGTG	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	106, 422, 512
AgsI	TTSAA	4 cut(s)	51, 121, 482, 653
AluBI	AGCT	3 cut(s)	14, 88, 632
AluI	AGCT	3 cut(s)	14, 88, 632
Alw26I	GTCTC	1 cut(s)	46
AoxI	GGCC	2 cut(s)	3, 624
ApeKI	GCWGC	5 cut(s)	134, 137, 587, 632, 635
Asp700I	GAANNNNTTC	1 cut(s)	264
AsuC2I	CCSGG	3 cut(s)	18, 166, 462
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	5 cut(s)	121, 149, 574, 619, 622
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	439
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BclI	TGATCA	1 cut(s)	348
BcnI	CCSGG	3 cut(s)	18, 166, 462
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	2 cut(s)	549, 554
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	7 cut(s)	135, 138, 588, 633, 636, 639, 642
BlsI	GCNGC	7 cut(s)	136, 139, 589, 634, 637, 640, 643
Bme1390I	CCNGG	3 cut(s)	18, 166, 462
BmrFI	CCNGG	3 cut(s)	18, 166, 462
BmsI	GCATC	3 cut(s)	139, 202, 655
BpuEI	CTTGAG	2 cut(s)	167, 290
BpuMI	CCSGG	3 cut(s)	18, 166, 462
BsaJI	CCNNGG	2 cut(s)	165, 506
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 422, 512
Bse118I	RCCGGY	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	165, 506
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	3 cut(s)	106, 422, 512
BseXI	GCAGC	5 cut(s)	121, 149, 574, 619, 622
Bsh1236I	CGCG	1 cut(s)	508
BshFI	GGCC	2 cut(s)	5, 626
BsiSI	CCGG	4 cut(s)	18, 165, 279, 462
BslI	CCNNNNNNNGG	3 cut(s)	106, 422, 512
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	5, 626
Bsp143I	GATC	2 cut(s)	348, 402
BspACI	CCGC	8 cut(s)	174, 239, 446, 506, 508, 639, 642, 678
BspANI	GGCC	2 cut(s)	5, 626
BspFNI	CGCG	1 cut(s)	508
BspMAI	CTGCAG	1 cut(s)	139
BsrBI	CCGCTC	2 cut(s)	241, 644
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	165, 506
BssMI	GATC	2 cut(s)	348, 402
Bst6I	CTCTTC	3 cut(s)	597, 608, 615
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	201, 413, 499
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	508
BstKTI	GATC	2 cut(s)	351, 405
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	348, 402
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 134, 205, 632, 638, 641
BstSCI	CCNGG	3 cut(s)	16, 164, 460
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	508
BstV1I	GCAGC	5 cut(s)	121, 149, 574, 619, 622
BsuRI	GGCC	2 cut(s)	5, 626
BtgI	CCRYGG	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	2 cut(s)	349, 375
BtsIMutI	CAGTG	2 cut(s)	349, 375
Cac8I	GCNNGC	3 cut(s)	201, 413, 499
Cfr10I	RCCGGY	1 cut(s)	278
Cfr42I	CCGCGG	1 cut(s)	509
CseI	GACGC	1 cut(s)	307
CviAII	CATG	2 cut(s)	142, 379
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	350, 404
DpnII	GATC	2 cut(s)	348, 402
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	597, 608, 615
EarI	CTCTTC	3 cut(s)	597, 608, 615
EciI	GGCGGA	2 cut(s)	435, 693
Eco32I	GATATC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	519, 584
EcoRV	GATATC	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	2 cut(s)	145, 382
FaiI	YATR	5 cut(s)	24, 143, 258, 380, 429
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	2 cut(s)	141, 378
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	7 cut(s)	135, 138, 588, 633, 636, 639, 642
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	7 cut(s)	135, 138, 588, 633, 636, 639, 642
FspBI	CTAG	2 cut(s)	549, 554
GluI	GCNGC	7 cut(s)	135, 138, 588, 633, 636, 639, 642
HaeIII	GGCC	2 cut(s)	5, 626
HapII	CCGG	4 cut(s)	18, 165, 279, 462
HgaI	GACGC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	145, 382
HpaII	CCGG	4 cut(s)	18, 165, 279, 462
Hpy188I	TCNGA	3 cut(s)	84, 225, 538
Hpy188III	TCNNGA	2 cut(s)	184, 269
Hpy99I	CGWCG	2 cut(s)	60, 301
HpyAV	CCTTC	5 cut(s)	245, 254, 376, 505, 667
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 134, 205, 632, 638, 641
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	2 cut(s)	145, 382
Ksp22I	TGATCA	1 cut(s)	348
KspI	CCGCGG	1 cut(s)	509
Kzo9I	GATC	2 cut(s)	348, 402
LmnI	GCTCC	3 cut(s)	19, 93, 226
LpnPI	CCDG	8 cut(s)	31, 178, 222, 292, 423, 429, 462, 475
Lsp1109I	GCAGC	5 cut(s)	121, 149, 574, 619, 622
LweI	GCATC	3 cut(s)	139, 202, 655
MaeI	CTAG	2 cut(s)	549, 554
MalI	GATC	2 cut(s)	350, 404
MbiI	CCGCTC	2 cut(s)	241, 644
MboI	GATC	2 cut(s)	348, 402
MboII	GAAGA	9 cut(s)	133, 317, 569, 577, 614, 619, 622, 625, 632
MfeI	CAATTG	2 cut(s)	153, 216
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	153, 189, 216
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	8 cut(s)	82, 110, 265, 532, 567, 592, 616, 674
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	4 cut(s)	18, 165, 279, 462
MspR9I	CCNGG	3 cut(s)	18, 166, 462
MunI	CAATTG	2 cut(s)	153, 216
Mva1269I	GAATGC	1 cut(s)	264
MvnI	CGCG	1 cut(s)	508
MwoI	GCNNNNNNNGC	6 cut(s)	11, 134, 205, 632, 638, 641
NciI	CCSGG	3 cut(s)	18, 166, 462
NdeII	GATC	2 cut(s)	348, 402
NlaIII	CATG	2 cut(s)	145, 382
PctI	GAATGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	264
PkrI	GCNGC	7 cut(s)	136, 139, 589, 634, 637, 640, 643
PstI	CTGCAG	1 cut(s)	139
SacII	CCGCGG	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	7 cut(s)	135, 138, 588, 633, 636, 639, 642
Sau3AI	GATC	2 cut(s)	348, 402
ScrFI	CCNGG	3 cut(s)	18, 166, 462
SetI	ASST	5 cut(s)	16, 90, 237, 387, 634
SfaNI	GCATC	3 cut(s)	139, 202, 655
SfcI	CTRYAG	1 cut(s)	135
Sfr303I	CCGCGG	1 cut(s)	509
SgrBI	CCGCGG	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	182, 269
SmoI	CTYRAG	2 cut(s)	182, 269
Sse9I	AATT	3 cut(s)	153, 189, 216
SsiI	CCGC	8 cut(s)	174, 239, 446, 506, 508, 639, 642, 678
SspI	AATATT	1 cut(s)	318
SspMI	CTAG	2 cut(s)	549, 554
StyD4I	CCNGG	3 cut(s)	16, 164, 460
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	153, 189, 216
TauI	GCSGC	2 cut(s)	641, 644
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	2 cut(s)	349, 375
TseI	GCWGC	5 cut(s)	134, 137, 587, 632, 635
TspDTI	ATGAA	3 cut(s)	242, 273, 395
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	349, 375
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	2 cut(s)	549, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.