Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8515997.1

Orthogroup ID

OG0013413

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1861

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8515997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 742 bp

gcaaaaaggctttctcgcgtcttcttcacaaacttcatcagacgccgatggccaccacagctcacagcaatacgacccgatttatcgtcccaatttcaacccgacaacccgcttgccccgccccgaaatttcggaacctcatccaccgcatcgaaacggaccattgaagattgcaagtatgagtgatgcaattgatttaactggagatggaggtgtgctcaagaaaatcgtaaggcatgccaaaccagatgcaactggtccgacgcaagaccttcctcttgttgatgttcattatgaaggggttcttgaggaaactggggaagtgtttgatacgactcatgaggacaatacgattttctcatttgagattgggaagggcagtgtaatcaaggcttgggatgttgcactgagaaccatgaaggttggcgagattgctaagatcacttgcaagcccgaatatgcttatggcagtgcagggtctccaccagatatcccaccagatgcaacccttatatttgaagtcgagttagttgcctgcaacccacggaagggattgagtctgggtagtgcttcagaggaaaggaataggctagaagaactgaagaagcagagagagcttgctgctgcaaccaaagaggaagagaagaagaagagagaagaggccaaagctgccgctgcttcccgtattcaagccaagttagatgccaagaagggaggaaagggaaaaggcaaaggaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

246

Amino Acids

26.68

Weight (kDa)

7.22

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55520 AT3G55520 AT3G55520
fragaria_vesca	FvH4_7g22820
malus_domestica	MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica	Prupe.2G238000_v2.0.a1
pyrus_communis	pycom07g18830
rosa_chinensis	RchiOBHm_Chr1g0367961
rosa_laevigata	RLG00000027253
rosa_multiflora	Rmu_co8515997.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289050
rosa_rugosa	Rorug01G0337800
rosa_samantha	Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana	Rw1G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	18
AciI	CCGC	4 cut(s)	110, 119, 147, 673
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	2 cut(s)	556, 621
AcyI	GRCGYC	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	548, 549
AgsI	TTSAA	4 cut(s)	98, 167, 519, 690
AluBI	AGCT	3 cut(s)	61, 617, 669
AluI	AGCT	3 cut(s)	61, 617, 669
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	484
AoxI	GGCC	2 cut(s)	50, 661
ApeKI	GCWGC	4 cut(s)	621, 624, 669, 675
ApoI	RAATTY	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	159, 258
AvaII	GGWCC	2 cut(s)	159, 258
BalI	TGGCCA	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	4 cut(s)	608, 611, 656, 662
BccI	CCATC	2 cut(s)	42, 201
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	1 cut(s)	591
BisI	GCNGC	5 cut(s)	622, 625, 670, 673, 676
BlsI	GCNGC	5 cut(s)	623, 626, 671, 674, 677
Bme18I	GGWCC	2 cut(s)	159, 258
BmgT120I	GGNCC	2 cut(s)	159, 258
BmiI	GGNNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	5 cut(s)	158, 176, 239, 491, 692
BmuI	ACTGGG	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	13
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpmI	CTGGAG	1 cut(s)	223
BpuEI	CTTGAG	2 cut(s)	204, 327
BsaHI	GRCGYC	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	543
Bsc4I	CCNNNNNNNGG	2 cut(s)	548, 549
Bse1I	ACTGG	3 cut(s)	206, 260, 320
BseDI	CCNNGG	1 cut(s)	543
BseGI	GGATG	2 cut(s)	140, 404
BseLI	CCNNNNNNNGG	2 cut(s)	548, 549
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	3 cut(s)	206, 260, 320
BseXI	GCAGC	4 cut(s)	608, 611, 656, 662
BsgI	GTGCAG	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	52, 663
BsiHKAI	GWGCWC	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	548, 549
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	52, 663
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	439
BspACI	CCGC	4 cut(s)	110, 119, 147, 673
BspANI	GGCC	2 cut(s)	52, 663
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	484
BsrI	ACTGG	3 cut(s)	206, 260, 320
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	1 cut(s)	439
BssNI	GRCGYC	1 cut(s)	43
Bst6I	CTCTTC	3 cut(s)	634, 645, 652
BstACI	GRCGYC	1 cut(s)	43
BstC8I	GCNNGC	5 cut(s)	114, 238, 450, 536, 619
BstDEI	CTNAG	2 cut(s)	408, 436
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	2 cut(s)	140, 404
BstFNI	CGCG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 118, 614, 669, 675
BstNSI	RCATGY	1 cut(s)	240
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	4 cut(s)	608, 611, 656, 662
BstV2I	GAAGAC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	52, 663
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	140, 404
BtsI	GCAGTG	2 cut(s)	386, 476
BtsIMutI	CAGTG	3 cut(s)	386, 405, 476
Cac8I	GCNNGC	5 cut(s)	114, 238, 450, 536, 619
CciI	TCATGA	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	159, 258
CseI	GACGC	3 cut(s)	7, 51, 272
CviAII	CATG	3 cut(s)	237, 339, 416
DdeI	CTNAG	2 cut(s)	408, 436
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	50
Eam1104I	CTCTTC	3 cut(s)	634, 645, 652
EarI	CTCTTC	3 cut(s)	634, 645, 652
Eco31I	GGTCTC	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	491
Eco47I	GGWCC	2 cut(s)	159, 258
Eco57I	CTGAAG	2 cut(s)	556, 621
EcoRV	GATATC	1 cut(s)	491
FaeI	CATG	3 cut(s)	240, 342, 419
FaiI	YATR	8 cut(s)	180, 238, 295, 340, 417, 460, 466, 513
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	3 cut(s)	236, 338, 415
FauI	CCCGC	2 cut(s)	117, 126
Fnu4HI	GCNGC	5 cut(s)	622, 625, 670, 673, 676
FokI	GGATG	2 cut(s)	127, 411
Fsp4HI	GCNGC	5 cut(s)	622, 625, 670, 673, 676
FspBI	CTAG	1 cut(s)	591
GluI	GCNGC	5 cut(s)	622, 625, 670, 673, 676
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	52, 663
HgaI	GACGC	3 cut(s)	7, 51, 272
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	240, 342, 419
HinfI	GANTC	2 cut(s)	335, 557
Hpy188I	TCNGA	4 cut(s)	41, 134, 262, 575
Hpy188III	TCNNGA	3 cut(s)	221, 306, 339
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	6 cut(s)	282, 291, 368, 413, 542, 704
HpyCH4V	TGCA	9 cut(s)	174, 189, 252, 405, 448, 474, 504, 538, 627
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 118, 614, 669, 675
HpyF3I	CTNAG	2 cut(s)	408, 436
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	3 cut(s)	240, 342, 419
Kzo9I	GATC	1 cut(s)	439
LpnPI	CCDG	9 cut(s)	187, 241, 259, 301, 460, 499, 511, 546, 548
Lsp1109I	GCAGC	4 cut(s)	608, 611, 656, 662
LweI	GCATC	5 cut(s)	158, 176, 239, 491, 692
MaeI	CTAG	1 cut(s)	591
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MfeI	CAATTG	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	52
MluCI	AATT	3 cut(s)	92, 127, 190
MluNI	TGGCCA	1 cut(s)	52
MlyI	GAGTC	2 cut(s)	329, 566
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	9 cut(s)	148, 204, 286, 302, 335, 569, 629, 653, 708
Mox20I	TGGCCA	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	301
MscI	TGGCCA	1 cut(s)	52
MseI	TTAA	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	675
MunI	CAATTG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	5 cut(s)	58, 118, 614, 669, 675
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	3 cut(s)	240, 342, 419
NlaIV	GGNNCC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	240
PagI	TCATGA	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	301
PkrI	GCNGC	5 cut(s)	623, 626, 671, 674, 677
PleI	GAGTC	2 cut(s)	329, 565
PpsI	GAGTC	2 cut(s)	329, 565
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	159, 258
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	5 cut(s)	622, 625, 670, 673, 676
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	2 cut(s)	159, 258
SchI	GAGTC	2 cut(s)	329, 566
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	7 cut(s)	63, 140, 215, 274, 424, 619, 671
SfaNI	GCATC	5 cut(s)	158, 176, 239, 491, 692
SinI	GGWCC	2 cut(s)	159, 258
SmlI	CTYRAG	2 cut(s)	219, 306
SmoI	CTYRAG	2 cut(s)	219, 306
SphI	GCATGC	1 cut(s)	240
Sse9I	AATT	3 cut(s)	92, 127, 190
SsiI	CCGC	4 cut(s)	110, 119, 147, 673
SspMI	CTAG	1 cut(s)	591
TaqI	TCGA	2 cut(s)	152, 523
TasI	AATT	3 cut(s)	92, 127, 190
TauI	GCSGC	1 cut(s)	675
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	386, 412, 476
TseI	GCWGC	4 cut(s)	621, 624, 669, 675
TspDTI	ATGAA	4 cut(s)	25, 279, 310, 432
TspGWI	ACGGA	2 cut(s)	172, 560
TspRI	CASTG	3 cut(s)	386, 412, 476
VpaK11BI	GGWCC	2 cut(s)	159, 258
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.