Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0013413

Physical Location & Seq

Genomic Coordinates Forward (+)

56488631 .. 56493356

Gene Structure 4726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG339000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATAGTACTACGCCCATGGCCACCACAGCTCACAGCAATACGACCCGATTTATCGTCCCAATTTCAACCCGACAACCCGCTTGCCCCGCCCGAAATTTCGGAACCTCATCCACCGCCTCGAAACGGACCGTTGAAGATTGCAAGTATGAGTGATGCAATTGATTTAACTGGAGATGGAGGTGTGCTCAAGAAGATTGTAAGGCATGCCAAACCAGATGCAACTGGTCCGACGCAAGACCTTCCTCTTGTTGATGTTCATTATGAAGGGGTTCTTGAGGAAACTGGGGAAGTGTTTGATACGACTCATGAGGACAATACGATTTTCTCATTTGAGATTGGGAAGGGCAGTGTAATCAAGGCTTGGGATGTTGCACTGAGAACCATGAAGGTTGGCGAGATTGCTAAGATCACTTGCAAGCCCGAATATGCTTATGGCAGTGCAGGGTCTCCACCAGATATCCCACCAGATGCAACCCTTATATTTGAGGTGGAGTTAGTTGCCTGCAACCCACGGAAGGGATTGAGTCTGGGTAGTGCTTCAGAGGAAAGGAATAGGCTAGAAGAACTGAAGAAGCAGAGAGAGCTTGCTGCTGCAACCAAAGAGGAAGAGAAGAAGAAGAGAGAAGAGGCCAAAGCTGCCGCTGCTGCCCGTATTCAAGCTAAGTTAGATGCCAAGAAGGGAGGAAAGGGAAAAGGCAAAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

236

Amino Acids

25.53

Weight (kDa)

6.47

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	83 - 167	1.1e-29	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55520 AT3G55520 AT3G55520
fragaria_vesca	FvH4_7g22820
malus_domestica	MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica	Prupe.2G238000_v2.0.a1
pyrus_communis	pycom07g18830
rosa_chinensis	RchiOBHm_Chr1g0367961
rosa_laevigata	RLG00000027253
rosa_multiflora	Rmu_co8515997.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289050
rosa_rugosa	Rorug01G0337800
rosa_samantha	Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana	Rw1G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	80, 89, 116, 642
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	96
AcuI	CTGAAG	2 cut(s)	525, 590
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	3 cut(s)	125, 517, 518
AgsI	TTSAA	3 cut(s)	68, 136, 659
AluBI	AGCT	4 cut(s)	31, 586, 638, 662
AluI	AGCT	4 cut(s)	31, 586, 638, 662
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	453
AoxI	GGCC	2 cut(s)	20, 630
ApeKI	GCWGC	5 cut(s)	590, 593, 638, 644, 647
ApoI	RAATTY	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	128, 227
AvaII	GGWCC	2 cut(s)	128, 227
BalI	TGGCCA	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	5 cut(s)	577, 580, 625, 631, 634
BccI	CCATC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	1 cut(s)	560
BisI	GCNGC	6 cut(s)	591, 594, 639, 642, 645, 648
BlsI	GCNGC	6 cut(s)	592, 595, 640, 643, 646, 649
BmcAI	AGTACT	1 cut(s)	9
Bme18I	GGWCC	2 cut(s)	128, 227
BmgT120I	GGNCC	2 cut(s)	128, 227
BmiI	GGNNCC	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	4 cut(s)	145, 208, 460, 661
BmuI	ACTGGG	1 cut(s)	294
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpmI	CTGGAG	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	173, 296
BsaI	GGTCTC	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	17, 512
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 517, 518
Bse1I	ACTGG	3 cut(s)	175, 229, 289
BseDI	CCNNGG	2 cut(s)	17, 512
BseGI	GGATG	2 cut(s)	109, 373
BseLI	CCNNNNNNNGG	3 cut(s)	125, 517, 518
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	3 cut(s)	175, 229, 289
BseXI	GCAGC	5 cut(s)	577, 580, 625, 631, 634
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	22, 632
BsiHKAI	GWGCWC	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	125, 517, 518
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	22, 632
Bso31I	GGTCTC	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	4 cut(s)	80, 89, 116, 642
BspANI	GGCC	2 cut(s)	22, 632
BspCNI	CTCAG	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	453
BsrI	ACTGG	3 cut(s)	175, 229, 289
BssECI	CCNNGG	2 cut(s)	17, 512
BssMI	GATC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	3 cut(s)	603, 614, 621
BstC8I	GCNNGC	5 cut(s)	84, 207, 419, 505, 588
BstDEI	CTNAG	3 cut(s)	377, 405, 663
BstDSI	CCRYGG	2 cut(s)	17, 512
BstF5I	GGATG	2 cut(s)	109, 373
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 88, 583, 638, 644, 647
BstNSI	RCATGY	1 cut(s)	209
BstV1I	GCAGC	5 cut(s)	577, 580, 625, 631, 634
BsuRI	GGCC	2 cut(s)	22, 632
BtgI	CCRYGG	2 cut(s)	17, 512
BtsCI	GGATG	2 cut(s)	109, 373
BtsI	GCAGTG	2 cut(s)	355, 445
BtsIMutI	CAGTG	3 cut(s)	355, 374, 445
Cac8I	GCNNGC	5 cut(s)	84, 207, 419, 505, 588
CciI	TCATGA	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	128, 227
CpoI	CGGWCCG	1 cut(s)	128
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	8
CspI	CGGWCCG	1 cut(s)	128
CviAII	CATG	4 cut(s)	18, 206, 308, 385
CviJI	RGCY	9 cut(s)	22, 31, 362, 421, 559, 586, 632, 638, 662
CviKI_1	RGCY	9 cut(s)	22, 31, 362, 421, 559, 586, 632, 638, 662
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	3 cut(s)	377, 405, 663
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	20
Eam1104I	CTCTTC	3 cut(s)	603, 614, 621
EarI	CTCTTC	3 cut(s)	603, 614, 621
Eco130I	CCWWGG	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	453
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	128, 227
Eco57I	CTGAAG	2 cut(s)	525, 590
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	4 cut(s)	21, 209, 311, 388
FaiI	YATR	9 cut(s)	19, 149, 207, 264, 309, 386, 429, 435, 482
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	4 cut(s)	17, 205, 307, 384
FauI	CCCGC	2 cut(s)	87, 96
Fnu4HI	GCNGC	6 cut(s)	591, 594, 639, 642, 645, 648
FokI	GGATG	2 cut(s)	96, 380
Fsp4HI	GCNGC	6 cut(s)	591, 594, 639, 642, 645, 648
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	6 cut(s)	591, 594, 639, 642, 645, 648
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	22, 632
HgaI	GACGC	1 cut(s)	241
Hin1II	CATG	4 cut(s)	21, 209, 311, 388
HinfI	GANTC	2 cut(s)	304, 526
Hpy188I	TCNGA	3 cut(s)	103, 231, 544
Hpy188III	TCNNGA	3 cut(s)	190, 275, 308
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	6 cut(s)	251, 260, 337, 382, 511, 673
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	9 cut(s)	143, 158, 221, 374, 417, 443, 473, 507, 596
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 88, 583, 638, 644, 647
HpyF3I	CTNAG	3 cut(s)	377, 405, 663
Hsp92II	CATG	4 cut(s)	21, 209, 311, 388
Kzo9I	GATC	1 cut(s)	408
LpnPI	CCDG	9 cut(s)	156, 210, 228, 270, 429, 468, 480, 515, 517
Lsp1109I	GCAGC	5 cut(s)	577, 580, 625, 631, 634
LweI	GCATC	4 cut(s)	145, 208, 460, 661
MaeI	CTAG	1 cut(s)	560
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	9 cut(s)	148, 205, 575, 583, 620, 625, 628, 631, 638
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	22
MluCI	AATT	3 cut(s)	62, 96, 159
MluNI	TGGCCA	1 cut(s)	22
MlyI	GAGTC	2 cut(s)	298, 535
MmeI	TCCRAC	1 cut(s)	254
Mox20I	TGGCCA	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	22
MseI	TTAA	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	22
MspA1I	CMGCKG	1 cut(s)	644
MunI	CAATTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	6 cut(s)	28, 88, 583, 638, 644, 647
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	4 cut(s)	21, 209, 311, 388
NlaIV	GGNNCC	1 cut(s)	105
NspI	RCATGY	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	209
PagI	TCATGA	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	270
PkrI	GCNGC	6 cut(s)	592, 595, 640, 643, 646, 649
PleI	GAGTC	2 cut(s)	298, 534
PpsI	GAGTC	2 cut(s)	298, 534
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	128, 227
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
Rsr2I	CGGWCCG	1 cut(s)	128
RsrII	CGGWCCG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	6 cut(s)	591, 594, 639, 642, 645, 648
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	128, 227
ScaI	AGTACT	1 cut(s)	9
SchI	GAGTC	2 cut(s)	298, 535
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	9 cut(s)	33, 109, 184, 243, 393, 492, 588, 640, 664
SfaNI	GCATC	4 cut(s)	145, 208, 460, 661
SinI	GGWCC	2 cut(s)	128, 227
SmlI	CTYRAG	2 cut(s)	188, 275
SmoI	CTYRAG	2 cut(s)	188, 275
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	3 cut(s)	62, 96, 159
SsiI	CCGC	4 cut(s)	80, 89, 116, 642
SspMI	CTAG	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	121
TasI	AATT	3 cut(s)	62, 96, 159
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	1 cut(s)	644
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	3 cut(s)	355, 381, 445
TseI	GCWGC	5 cut(s)	590, 593, 638, 644, 647
TspDTI	ATGAA	3 cut(s)	248, 279, 401
TspGWI	ACGGA	2 cut(s)	141, 529
TspRI	CASTG	3 cut(s)	355, 381, 445
VpaK11BI	GGWCC	2 cut(s)	128, 227
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	1 cut(s)	560
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.