RchiOBHm_Chr1g0367961

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013413
Physical Location & Seq
Forward (+)
58217062 .. 58219316
2255 bp
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UTR
Exon/CDS
Intron
PRQ59233

Sequence Viewer

Length: 813 bp
ATGAAATCATTGACACGCTCTGGCCTCTGGGTGCGCGTGTGGGATATCCTCGAAGCATCGGACTATAAAACGCAAAAAGGCCTTCTCGCGTCTTCTTCACAAACTTCATCAGACGCCGATGGCCACCACAGCTCACAGCAATACGACCCGATTTATCGTCCCAATTTCAACCCGACAACCCGCTTGCCCCGCCCCGAAATTTCGGAACCTCATCCACCGCATCGAAACGGACCATTGAAGATTGCAAGTATGAGTGATGCAATTGATTTAACTGGAGATGGAGGTGTGCTCAAGAAAATTGTAAGGCATGCCAAACCAGATGCAACTGGTCCGACGCAAGACCTTCCTCTTGTTGATGTTCATTATGAAGGGGTTCTTGAGGAAACTGGGGAAGTGTTTGATACGACTCATGAGGACAATACGATTTTCTCATTTGAGATTGGGAAGGGCAGTGTAATCAAGGCTTGGGATGTTGCACTGAGAACCATGAAGGTTGGCGAGATTGCTAAGATCACTTGCAAGCCCGAATATGCTTATGGCAGTGCAGGGTCTCCACCAGATATCCCACCAGATGCAACCCTTATATTTGAAGTCGAGTTAGTTGCCTGCAACCCACGGAAGGGATTGAGTCTGGGTAGTGCTTCAGAGGAAAGGAATAGGCTAGAAGAACTGAAGAAGCAGAGAGAGCTTGCTGCTGCAACCAAAGAGGAAGAGAAGAAGAAGAGGGAAGAGGCCAAAGCTGCCGCTGCTTCCCGTATTCAAGCCAAGTTAGATGCCAAGAAGGGAGGAAAGGGAAAAGGCAAAGGAAAATAG

Protein Analysis

270

Amino Acids

29.48

Weight (kDa)

7.74

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 117 - 201 1.5e-29 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55520 AT3G55520 AT3G55520
fragaria_vesca FvH4_7g22820
malus_domestica MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica Prupe.2G238000_v2.0.a1
pyrus_communis pycom07g18830
rosa_chinensis RchiOBHm_Chr1g0367961
rosa_laevigata RLG00000027253
rosa_multiflora Rmu_co8515997.1_g000001
rosa_roxburghii Rroxscaffold_4G00289050
rosa_rugosa Rorug01G0337800
rosa_samantha Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana Rw1G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 36, 89
AciI CCGC 4 cut(s) 181, 190, 218, 744
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 1 cut(s) 198
AcuI CTGAAG 2 cut(s) 627, 692
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 619, 620
AgsI TTSAA 4 cut(s) 169, 238, 590, 761
AluBI AGCT 3 cut(s) 132, 688, 740
AluI AGCT 3 cut(s) 132, 688, 740
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 555
AoxI GGCC 4 cut(s) 22, 79, 121, 732
ApeKI GCWGC 4 cut(s) 692, 695, 740, 746
ApoI RAATTY 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 230, 329
AvaII GGWCC 2 cut(s) 230, 329
BalI TGGCCA 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 679, 682, 727, 733
BccI CCATC 2 cut(s) 113, 272
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BcoDI GTCTC 1 cut(s) 555
BfaI CTAG 1 cut(s) 662
BisI GCNGC 5 cut(s) 693, 696, 741, 744, 747
BlsI GCNGC 5 cut(s) 694, 697, 742, 745, 748
Bme18I GGWCC 2 cut(s) 230, 329
BmgT120I GGNCC 2 cut(s) 230, 329
BmiI GGNNCC 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 6 cut(s) 65, 229, 247, 310, 562, 763
BmuI ACTGGG 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 275, 398
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 614
Bsc4I CCNNNNNNNGG 2 cut(s) 619, 620
Bse1I ACTGG 3 cut(s) 277, 331, 391
BseDI CCNNGG 1 cut(s) 614
BseGI GGATG 2 cut(s) 211, 475
BseLI CCNNNNNNNGG 2 cut(s) 619, 620
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 3 cut(s) 277, 331, 391
BseXI GCAGC 4 cut(s) 679, 682, 727, 733
BsgI GTGCAG 1 cut(s) 564
Bsh1236I CGCG 2 cut(s) 36, 89
BshFI GGCC 4 cut(s) 24, 81, 123, 734
BsiHKAI GWGCWC 1 cut(s) 291
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 619, 620
BsmAI GTCTC 1 cut(s) 555
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 4 cut(s) 24, 81, 123, 734
Bso31I GGTCTC 1 cut(s) 555
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 510
BspACI CCGC 4 cut(s) 181, 190, 218, 744
BspANI GGCC 4 cut(s) 24, 81, 123, 734
BspCNI CTCAG 1 cut(s) 471
BspFNI CGCG 2 cut(s) 36, 89
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 555
BsrI ACTGG 3 cut(s) 277, 331, 391
BssECI CCNNGG 1 cut(s) 614
BssMI GATC 1 cut(s) 510
BssNI GRCGYC 1 cut(s) 114
Bst6I CTCTTC 3 cut(s) 705, 716, 723
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 5 cut(s) 185, 309, 521, 607, 690
BstDEI CTNAG 2 cut(s) 479, 507
BstDSI CCRYGG 1 cut(s) 614
BstF5I GGATG 2 cut(s) 211, 475
BstFNI CGCG 2 cut(s) 36, 89
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 513
BstMAI GTCTC 1 cut(s) 555
BstMBI GATC 1 cut(s) 510
BstMWI GCNNNNNNNGC 5 cut(s) 129, 189, 685, 740, 746
BstNSI RCATGY 1 cut(s) 311
BstUI CGCG 2 cut(s) 36, 89
BstV1I GCAGC 4 cut(s) 679, 682, 727, 733
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 4 cut(s) 24, 81, 123, 734
BtgI CCRYGG 1 cut(s) 614
BtsCI GGATG 2 cut(s) 211, 475
BtsI GCAGTG 2 cut(s) 457, 547
BtsIMutI CAGTG 3 cut(s) 457, 476, 547
Cac8I GCNNGC 5 cut(s) 185, 309, 521, 607, 690
CciI TCATGA 1 cut(s) 409
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 230, 329
CseI GACGC 3 cut(s) 78, 122, 343
CviAII CATG 3 cut(s) 308, 410, 487
DdeI CTNAG 2 cut(s) 479, 507
DpnI GATC 1 cut(s) 512
DpnII GATC 1 cut(s) 510
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 3 cut(s) 705, 716, 723
EarI CTCTTC 3 cut(s) 705, 716, 723
Eco147I AGGCCT 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 555
Eco32I GATATC 2 cut(s) 46, 562
Eco47I GGWCC 2 cut(s) 230, 329
Eco57I CTGAAG 2 cut(s) 627, 692
EcoRV GATATC 2 cut(s) 46, 562
FaeI CATG 3 cut(s) 311, 413, 490
FaiI YATR 9 cut(s) 66, 251, 309, 366, 411, 488, 531, 537, 584
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FaqI GGGAC 1 cut(s) 144
FatI CATG 3 cut(s) 307, 409, 486
FauI CCCGC 2 cut(s) 188, 197
Fnu4HI GCNGC 5 cut(s) 693, 696, 741, 744, 747
FokI GGATG 2 cut(s) 198, 482
Fsp4HI GCNGC 5 cut(s) 693, 696, 741, 744, 747
FspBI CTAG 1 cut(s) 662
GlaI GCGC 1 cut(s) 35
GluI GCNGC 5 cut(s) 693, 696, 741, 744, 747
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 4 cut(s) 24, 81, 123, 734
HgaI GACGC 3 cut(s) 78, 122, 343
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 3 cut(s) 311, 413, 490
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 2 cut(s) 406, 628
Hpy188I TCNGA 5 cut(s) 61, 112, 205, 333, 646
Hpy188III TCNNGA 3 cut(s) 292, 377, 410
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 7 cut(s) 92, 353, 362, 439, 484, 613, 775
HpyCH4V TGCA 9 cut(s) 245, 260, 323, 476, 519, 545, 575, 609, 698
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 189, 685, 740, 746
HpyF3I CTNAG 2 cut(s) 479, 507
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 3 cut(s) 311, 413, 490
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 1 cut(s) 510
Lsp1109I GCAGC 4 cut(s) 679, 682, 727, 733
LweI GCATC 6 cut(s) 65, 229, 247, 310, 562, 763
MaeI CTAG 1 cut(s) 662
MalI GATC 1 cut(s) 512
MboI GATC 1 cut(s) 510
MfeI CAATTG 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 123
MluCI AATT 4 cut(s) 163, 198, 261, 297
MluNI TGGCCA 1 cut(s) 123
MlyI GAGTC 2 cut(s) 400, 637
MmeI TCCRAC 1 cut(s) 356
Mox20I TGGCCA 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 372
MscI TGGCCA 1 cut(s) 123
MseI TTAA 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 746
MunI CAATTG 1 cut(s) 261
MvnI CGCG 2 cut(s) 36, 89
MwoI GCNNNNNNNGC 5 cut(s) 129, 189, 685, 740, 746
NdeII GATC 1 cut(s) 510
NlaIII CATG 3 cut(s) 311, 413, 490
NlaIV GGNNCC 1 cut(s) 207
NspI RCATGY 1 cut(s) 311
PaeI GCATGC 1 cut(s) 311
PagI TCATGA 1 cut(s) 409
PceI AGGCCT 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 372
PkrI GCNGC 5 cut(s) 694, 697, 742, 745, 748
PleI GAGTC 2 cut(s) 400, 636
PpsI GAGTC 2 cut(s) 400, 636
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 230, 329
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 5 cut(s) 693, 696, 741, 744, 747
Sau3AI GATC 1 cut(s) 510
Sau96I GGNCC 2 cut(s) 230, 329
SchI GAGTC 2 cut(s) 400, 637
SduI GDGCHC 1 cut(s) 291
SetI ASST 7 cut(s) 134, 211, 286, 345, 495, 690, 742
SfaNI GCATC 6 cut(s) 65, 229, 247, 310, 562, 763
SinI GGWCC 2 cut(s) 230, 329
SmlI CTYRAG 2 cut(s) 290, 377
SmoI CTYRAG 2 cut(s) 290, 377
SphI GCATGC 1 cut(s) 311
Sse9I AATT 4 cut(s) 163, 198, 261, 297
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 4 cut(s) 181, 190, 218, 744
SspMI CTAG 1 cut(s) 662
StuI AGGCCT 1 cut(s) 81
TaqI TCGA 3 cut(s) 51, 223, 594
TasI AATT 4 cut(s) 163, 198, 261, 297
TauI GCSGC 1 cut(s) 746
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 3 cut(s) 457, 483, 547
TseI GCWGC 4 cut(s) 692, 695, 740, 746
TspDTI ATGAA 5 cut(s) 17, 96, 350, 381, 503
TspGWI ACGGA 2 cut(s) 243, 631
TspRI CASTG 3 cut(s) 457, 483, 547
VpaK11BI GGWCC 2 cut(s) 230, 329
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.