RLG00000027253

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013413
Physical Location & Seq
Reverse (-)
9983961 .. 9985889
1929 bp
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UTR
Exon/CDS
Intron
RLM00000027253

Sequence Viewer

Length: 804 bp
ATGAATTCAATCACACGCTGTGGGTGCGCGTGTGGGATATCCTCGAAGCATCGGAATATAAAACACAGCTTTTTTCTCGTGTCTTCTTCACAAACTTCATCAGACGCCCATGGCCACCACAGCTCACAGCAATACGACCCGATTTATCGTTCCAATTTCAACCCGACATCCCGCTTGCCCCGCCCCGAAATTTCGGAACCTCATCCACCGCCTCGAAACGGACCATTGAAGATTGCAAGTATGAGTGATGCAATTGATTTAACTGGAGATGGAGGCGTGCTCAAGAAAATCGTAAGGCATGCCAAACCAGATGCAACTGGTCCGACGCAAGACCTTCCTCTTGTTGATGTTCATTATGAAGGGGTTCTTGAGGAAACTGGGGAAGTGTTTGATACGACTCATGAGGACAATACGATTTTCTCATTTGAGATTGGGAAGGGCAGTGTAATCAAGGCTTGGGATGTTGCACTGAGAACCATGAAGGTTGGCGAGATTGCTAAGATCACTTGCAAGCCCGAATATGCTTATGGCAGTGCAGGGTCTCCACCAGATGTCCCACCTGATGCAACCCTTATATTTGAAGTGGAGTTAGTTGCCTGCAACCCACGGAAGGGATTGAGTCTGGGTAGTGCTTCAGAGGAAAGGAATAGGCTAGAAGAACTGAAGAGGCAGAGAGAGCTTGCTGCTGCAACCAAAGAGGAAGAGAAGAAGAAGAGAGAAGAGGCCAAAGCTGCCGCTGCTACCCGTATTCAAGCTAAGTTAGATGCCAAGAAGGGAGGAAAGGGAAAAGGCAAAGGAAAATAG

Protein Analysis

268

Amino Acids

29.01

Weight (kDa)

8.69

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 114 - 198 5.6e-29 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55520 AT3G55520 AT3G55520
fragaria_vesca FvH4_7g22820
malus_domestica MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica Prupe.2G238000_v2.0.a1
pyrus_communis pycom07g18830
rosa_chinensis RchiOBHm_Chr1g0367961
rosa_laevigata RLG00000027253
rosa_multiflora Rmu_co8515997.1_g000001
rosa_roxburghii Rroxscaffold_4G00289050
rosa_rugosa Rorug01G0337800
rosa_samantha Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana Rw1G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 29
AciI CCGC 4 cut(s) 172, 181, 209, 735
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 2 cut(s) 4, 189
AcuI CTGAAG 2 cut(s) 618, 683
AcyI GRCGYC 1 cut(s) 105
AdeI CACNNNGTG 1 cut(s) 20
AfiI CCNNNNNNNGG 3 cut(s) 218, 610, 611
AgsI TTSAA 5 cut(s) 9, 160, 229, 581, 752
AluBI AGCT 5 cut(s) 69, 123, 679, 731, 755
AluI AGCT 5 cut(s) 69, 123, 679, 731, 755
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 546
AoxI GGCC 2 cut(s) 112, 723
ApeKI GCWGC 4 cut(s) 683, 686, 731, 737
ApoI RAATTY 2 cut(s) 4, 189
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 221, 320
AvaII GGWCC 2 cut(s) 221, 320
BalI TGGCCA 1 cut(s) 114
BauI CACGAG 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 4 cut(s) 670, 673, 718, 724
BccI CCATC 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 1 cut(s) 653
BisI GCNGC 5 cut(s) 684, 687, 732, 735, 738
BlsI GCNGC 5 cut(s) 685, 688, 733, 736, 739
Bme18I GGWCC 2 cut(s) 221, 320
BmgT120I GGNCC 2 cut(s) 221, 320
BmiI GGNNCC 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 5 cut(s) 58, 238, 301, 553, 754
BmuI ACTGGG 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 264, 296
BpmI CTGGAG 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 266, 389
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 2 cut(s) 109, 605
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 610, 611
Bse1I ACTGG 3 cut(s) 268, 322, 382
BseDI CCNNGG 2 cut(s) 109, 605
BseGI GGATG 3 cut(s) 167, 202, 466
BseLI CCNNNNNNNGG 3 cut(s) 218, 610, 611
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 3 cut(s) 268, 322, 382
BseXI GCAGC 4 cut(s) 670, 673, 718, 724
BsgI GTGCAG 1 cut(s) 555
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 2 cut(s) 114, 725
BsiHKAI GWGCWC 1 cut(s) 282
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 3 cut(s) 218, 610, 611
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 539
BsnI GGCC 2 cut(s) 114, 725
Bso31I GGTCTC 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 501
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 4 cut(s) 172, 181, 209, 735
BspANI GGCC 2 cut(s) 114, 725
BspCNI CTCAG 1 cut(s) 462
BspFNI CGCG 1 cut(s) 29
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 546
BsrI ACTGG 3 cut(s) 268, 322, 382
BssECI CCNNGG 2 cut(s) 109, 605
BssMI GATC 1 cut(s) 501
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 77
Bst6I CTCTTC 4 cut(s) 659, 696, 707, 714
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 6 cut(s) 176, 278, 300, 512, 598, 681
BstDEI CTNAG 3 cut(s) 470, 498, 756
BstDSI CCRYGG 2 cut(s) 109, 605
BstF5I GGATG 3 cut(s) 167, 202, 466
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 1 cut(s) 504
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 1 cut(s) 501
BstMWI GCNNNNNNNGC 6 cut(s) 24, 120, 180, 676, 731, 737
BstNSI RCATGY 1 cut(s) 302
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 4 cut(s) 670, 673, 718, 724
BstV2I GAAGAC 1 cut(s) 75
BsuRI GGCC 2 cut(s) 114, 725
BtgI CCRYGG 2 cut(s) 109, 605
BtsCI GGATG 3 cut(s) 167, 202, 466
BtsI GCAGTG 2 cut(s) 448, 538
BtsIMutI CAGTG 3 cut(s) 448, 467, 538
Cac8I GCNNGC 6 cut(s) 176, 278, 300, 512, 598, 681
CciI TCATGA 1 cut(s) 400
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 221, 320
CseI GACGC 2 cut(s) 113, 334
CviAII CATG 4 cut(s) 110, 299, 401, 478
DdeI CTNAG 3 cut(s) 470, 498, 756
DpnI GATC 1 cut(s) 503
DpnII GATC 1 cut(s) 501
DraIII CACNNNGTG 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 4 cut(s) 659, 696, 707, 714
EarI CTCTTC 4 cut(s) 659, 696, 707, 714
Eco130I CCWWGG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 546
Eco32I GATATC 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 221, 320
Eco57I CTGAAG 2 cut(s) 618, 683
EcoRI GAATTC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 113, 302, 404, 481
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 1 cut(s) 539
FatI CATG 4 cut(s) 109, 298, 400, 477
FauI CCCGC 2 cut(s) 179, 188
Fnu4HI GCNGC 5 cut(s) 684, 687, 732, 735, 738
FokI GGATG 3 cut(s) 154, 189, 473
Fsp4HI GCNGC 5 cut(s) 684, 687, 732, 735, 738
FspBI CTAG 1 cut(s) 653
GlaI GCGC 1 cut(s) 28
GluI GCNGC 5 cut(s) 684, 687, 732, 735, 738
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 2 cut(s) 114, 725
HgaI GACGC 2 cut(s) 113, 334
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 4 cut(s) 113, 302, 404, 481
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 2 cut(s) 397, 619
Hpy188I TCNGA 5 cut(s) 54, 103, 196, 324, 637
Hpy188III TCNNGA 3 cut(s) 283, 368, 401
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 6 cut(s) 344, 353, 430, 475, 604, 766
HpyCH4V TGCA 9 cut(s) 236, 251, 314, 467, 510, 536, 566, 600, 689
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 120, 180, 676, 731, 737
HpyF3I CTNAG 3 cut(s) 470, 498, 756
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 4 cut(s) 113, 302, 404, 481
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 501
LpnPI CCDG 9 cut(s) 249, 303, 321, 363, 522, 561, 573, 608, 610
Lsp1109I GCAGC 4 cut(s) 670, 673, 718, 724
LweI GCATC 5 cut(s) 58, 238, 301, 553, 754
MaeI CTAG 1 cut(s) 653
MalI GATC 1 cut(s) 503
MboI GATC 1 cut(s) 501
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 282
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 4 cut(s) 4, 154, 189, 252
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 2 cut(s) 391, 628
MmeI TCCRAC 1 cut(s) 347
Mox20I TGGCCA 1 cut(s) 114
MroXI GAANNNNTTC 1 cut(s) 363
MscI TGGCCA 1 cut(s) 114
MseI TTAA 1 cut(s) 260
Msp20I TGGCCA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 737
MunI CAATTG 1 cut(s) 252
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 6 cut(s) 24, 120, 180, 676, 731, 737
NcoI CCATGG 1 cut(s) 109
NdeII GATC 1 cut(s) 501
NlaIII CATG 4 cut(s) 113, 302, 404, 481
NlaIV GGNNCC 1 cut(s) 198
NspI RCATGY 1 cut(s) 302
PaeI GCATGC 1 cut(s) 302
PagI TCATGA 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 363
PkrI GCNGC 5 cut(s) 685, 688, 733, 736, 739
PleI GAGTC 2 cut(s) 391, 627
PpsI GAGTC 2 cut(s) 391, 627
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 2 cut(s) 221, 320
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 5 cut(s) 684, 687, 732, 735, 738
Sau3AI GATC 1 cut(s) 501
Sau96I GGNCC 2 cut(s) 221, 320
SchI GAGTC 2 cut(s) 391, 628
SduI GDGCHC 1 cut(s) 282
SetI ASST 9 cut(s) 71, 125, 202, 336, 486, 562, 681, 733, 757
SfaNI GCATC 5 cut(s) 58, 238, 301, 553, 754
SinI GGWCC 2 cut(s) 221, 320
SmlI CTYRAG 2 cut(s) 281, 368
SmoI CTYRAG 2 cut(s) 281, 368
SphI GCATGC 1 cut(s) 302
Sse9I AATT 4 cut(s) 4, 154, 189, 252
SsiI CCGC 4 cut(s) 172, 181, 209, 735
SspMI CTAG 1 cut(s) 653
StyI CCWWGG 1 cut(s) 109
TaqI TCGA 2 cut(s) 44, 214
TasI AATT 4 cut(s) 4, 154, 189, 252
TauI GCSGC 1 cut(s) 737
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 3 cut(s) 448, 474, 538
TseI GCWGC 4 cut(s) 683, 686, 731, 737
TspDTI ATGAA 5 cut(s) 17, 87, 341, 372, 494
TspGWI ACGGA 2 cut(s) 234, 622
TspRI CASTG 3 cut(s) 448, 474, 538
VpaK11BI GGWCC 2 cut(s) 221, 320
XapI RAATTY 2 cut(s) 4, 189
XceI RCATGY 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.