Rw1G030680

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013413
Physical Location & Seq
Forward (+)
58639354 .. 58641493
2140 bp
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UTR
Exon/CDS
Intron
Rw1G030680.1

Sequence Viewer

Length: 564 bp
ATGAGTGATGCAATTGATTTAACTGGAGATGGAGGTGTGCTCAAGAAAATTGTAAGGCATGCCAAACCAGATGCAACTGGTCCGACGCAAGACCTTCCTCTTGTTGATGTTCATTATGAAGGGGTTCTTGAGGAAACTGGGGAAGTGTTTGATACGACTCACGAGGACAATACGATTTTCTCATTTGAGATTGGGAAGGGCAGTGTAATCAAGGCTTGGGATGTTGCACTGAGAACCATGAAGGTTGGCGAGATTGCTAAGATCTCTTGCAAGCCCGAATATGCTTATGGCAGTGCAGGGTCTCCACCAGATATCCCACCAGATGCAACCCTTATATTTGAAGTCGAGTTAGTTGCCTGCAACCCACGGAAGGGATTGAGTCTGGGTAGTGCTTCAGAGGAAAGGAATAGGCTAGAAGAACTGAAGAAGCAGAGAGAGCTTGCTGCTGCAACCAAAGAGGAAGAGAAGAAGAAGAGGGAAGAGGCCAAAGCTGCCGCTGCTTCCCGTATTCAAGCCAAGTTAGATGCCAAGAAGGGAGGAAAGGGAAAAGGCAAAGGAAAATAG

Protein Analysis

187

Amino Acids

20.13

Weight (kDa)

6.36

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 34 - 118 2.3e-29 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55520 AT3G55520 AT3G55520
fragaria_vesca FvH4_7g22820
malus_domestica MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica Prupe.2G238000_v2.0.a1
pyrus_communis pycom07g18830
rosa_chinensis RchiOBHm_Chr1g0367961
rosa_laevigata RLG00000027253
rosa_multiflora Rmu_co8515997.1_g000001
rosa_roxburghii Rroxscaffold_4G00289050
rosa_rugosa Rorug01G0337800
rosa_samantha Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana Rw1G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 495
AcuI CTGAAG 2 cut(s) 378, 443
AfiI CCNNNNNNNGG 2 cut(s) 370, 371
AgsI TTSAA 2 cut(s) 341, 512
AluBI AGCT 2 cut(s) 439, 491
AluI AGCT 2 cut(s) 439, 491
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 306
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 4 cut(s) 443, 446, 491, 497
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 80
AvaII GGWCC 1 cut(s) 80
BauI CACGAG 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 4 cut(s) 430, 433, 478, 484
BccI CCATC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 413
BglII AGATCT 1 cut(s) 261
BisI GCNGC 5 cut(s) 444, 447, 492, 495, 498
BlsI GCNGC 5 cut(s) 445, 448, 493, 496, 499
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 3 cut(s) 61, 313, 514
BmuI ACTGGG 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 24, 56
BpmI CTGGAG 1 cut(s) 45
BpuEI CTTGAG 2 cut(s) 26, 149
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 365
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 371
Bse1I ACTGG 3 cut(s) 28, 82, 142
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 370, 371
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 3 cut(s) 28, 82, 142
BseXI GCAGC 4 cut(s) 430, 433, 478, 484
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 42
BslI CCNNNNNNNGG 2 cut(s) 370, 371
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 1 cut(s) 485
Bso31I GGTCTC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 1 cut(s) 495
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 306
BsrI ACTGG 3 cut(s) 28, 82, 142
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst6I CTCTTC 3 cut(s) 456, 467, 474
BstC8I GCNNGC 4 cut(s) 60, 272, 358, 441
BstDEI CTNAG 2 cut(s) 230, 258
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 3 cut(s) 436, 491, 497
BstNSI RCATGY 1 cut(s) 62
BstV1I GCAGC 4 cut(s) 430, 433, 478, 484
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 2 cut(s) 208, 298
BtsIMutI CAGTG 3 cut(s) 208, 227, 298
Cac8I GCNNGC 4 cut(s) 60, 272, 358, 441
Cfr13I GGNCC 1 cut(s) 80
CseI GACGC 1 cut(s) 94
CviAII CATG 2 cut(s) 59, 238
CviJI RGCY 7 cut(s) 215, 274, 412, 439, 485, 491, 515
CviKI_1 RGCY 7 cut(s) 215, 274, 412, 439, 485, 491, 515
DdeI CTNAG 2 cut(s) 230, 258
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eam1104I CTCTTC 3 cut(s) 456, 467, 474
EarI CTCTTC 3 cut(s) 456, 467, 474
Eco31I GGTCTC 1 cut(s) 306
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 378, 443
EcoRV GATATC 1 cut(s) 313
FaeI CATG 2 cut(s) 62, 241
FaiI YATR 6 cut(s) 60, 117, 239, 282, 288, 335
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 2 cut(s) 58, 237
Fnu4HI GCNGC 5 cut(s) 444, 447, 492, 495, 498
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 5 cut(s) 444, 447, 492, 495, 498
FspBI CTAG 1 cut(s) 413
GluI GCNGC 5 cut(s) 444, 447, 492, 495, 498
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 485
HgaI GACGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 62, 241
HinfI GANTC 2 cut(s) 157, 379
Hpy188I TCNGA 2 cut(s) 84, 397
Hpy188III TCNNGA 3 cut(s) 43, 128, 161
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 6 cut(s) 104, 113, 190, 235, 364, 526
HpyCH4V TGCA 8 cut(s) 11, 74, 227, 270, 296, 326, 360, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 491, 497
HpyF3I CTNAG 2 cut(s) 230, 258
Hsp92II CATG 2 cut(s) 62, 241
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 9 cut(s) 9, 63, 81, 123, 282, 321, 333, 368, 370
Lsp1109I GCAGC 4 cut(s) 430, 433, 478, 484
LweI GCATC 3 cut(s) 61, 313, 514
MaeI CTAG 1 cut(s) 413
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 7 cut(s) 428, 436, 473, 478, 481, 484, 491
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 2 cut(s) 12, 48
MlyI GAGTC 2 cut(s) 151, 388
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 9 cut(s) 26, 108, 124, 157, 391, 451, 468, 475, 530
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 497
MunI CAATTG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 436, 491, 497
NdeII GATC 1 cut(s) 261
NlaIII CATG 2 cut(s) 62, 241
NspI RCATGY 1 cut(s) 62
PaeI GCATGC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 123
PkrI GCNGC 5 cut(s) 445, 448, 493, 496, 499
PleI GAGTC 2 cut(s) 151, 387
PpsI GAGTC 2 cut(s) 151, 387
PspPI GGNCC 1 cut(s) 80
PsuI RGATCY 1 cut(s) 261
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 5 cut(s) 444, 447, 492, 495, 498
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 2 cut(s) 151, 388
SduI GDGCHC 1 cut(s) 42
SetI ASST 5 cut(s) 37, 96, 246, 441, 493
SfaNI GCATC 3 cut(s) 61, 313, 514
SinI GGWCC 1 cut(s) 80
SmlI CTYRAG 2 cut(s) 41, 128
SmoI CTYRAG 2 cut(s) 41, 128
SphI GCATGC 1 cut(s) 62
Sse9I AATT 2 cut(s) 12, 48
SsiI CCGC 1 cut(s) 495
SspMI CTAG 1 cut(s) 413
TaqI TCGA 1 cut(s) 345
TasI AATT 2 cut(s) 12, 48
TauI GCSGC 1 cut(s) 497
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 3 cut(s) 208, 234, 298
TseI GCWGC 4 cut(s) 443, 446, 491, 497
TspDTI ATGAA 3 cut(s) 101, 132, 254
TspGWI ACGGA 1 cut(s) 382
TspRI CASTG 3 cut(s) 208, 234, 298
VpaK11BI GGWCC 1 cut(s) 80
XceI RCATGY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.