Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013413

Physical Location & Seq

Genomic Coordinates Reverse (-)

9661706 .. 9663803

Gene Structure 2098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCACCACAGCTCACAGCAATACGACCCGATTTATCGTCCCAATTTCAACCCGACAACCCGCTTGCCCCGCCCGAAATTTCGGAACCTCATCCACCGCCTCGAAACGGATTGCAAGTATGAGTGATGCAATTGATTTAACTGGAGATGGAGGTGTGCTCAAGAAAATCGTAAGGCATGCCAAACCGGATGCAACTGGTCCGACGCAAGACCTTCCTCTTGTTGATGTTCATTATGAAGGGGTTCTTGAGGAAACTGGGGAAGTGTTTGATACGACCCATGAGGACAATACGATTTTCTCATTTGAGATTGGGAAGGGCAGTGTAATCAAGGCTTGGGATGTTGCACTGAGAACCATGAAGGTTGGTGAGATTGCTAAGATCACTTGCAAGCCCGAATATGCTTATGGCAGTGCAGGGTCTCCACCAGATATCCCACCAGATGCAACCCTTATATTTGAGGTGGAGTTAGTTGCCTGCAACCCACGGAAGGGATTGAGTCTGGGTAGTGCTTCAGAGGAAAGGAATAGGCTAGAAGAACTGAAGAAGCAGAGAGAGCTTGCAGCTGCAACCAAAGAGGAAGAGAAGAAGAAGAGAGAAGAGGCCAAAGCTGCCGCTGCTGCCCGTATTCAAGCTAAGTTAGATGCCAAGAAGGGAGGAAAGGGAAAAGGCAAAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

227

Amino Acids

24.35

Weight (kDa)

8.85

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	74 - 158	1e-29	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55520 AT3G55520 AT3G55520
fragaria_vesca	FvH4_7g22820
malus_domestica	MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica	Prupe.2G238000_v2.0.a1
pyrus_communis	pycom07g18830
rosa_chinensis	RchiOBHm_Chr1g0367961
rosa_laevigata	RLG00000027253
rosa_multiflora	Rmu_co8515997.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289050
rosa_rugosa	Rorug01G0337800
rosa_samantha	Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana	Rw1G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	63, 72, 99, 615
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	2 cut(s)	498, 563
AfiI	CCNNNNNNNGG	3 cut(s)	108, 490, 491
AgsI	TTSAA	2 cut(s)	51, 632
AluBI	AGCT	5 cut(s)	14, 559, 566, 611, 635
AluI	AGCT	5 cut(s)	14, 559, 566, 611, 635
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	426
AoxI	GGCC	2 cut(s)	3, 603
ApeKI	GCWGC	5 cut(s)	563, 566, 611, 617, 620
ApoI	RAATTY	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	5 cut(s)	553, 575, 598, 604, 607
BccI	CCATC	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	1 cut(s)	533
BisI	GCNGC	6 cut(s)	564, 567, 612, 615, 618, 621
BlsI	GCNGC	6 cut(s)	565, 568, 613, 616, 619, 622
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	88
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	4 cut(s)	118, 181, 433, 634
BmuI	ACTGGG	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	146, 269
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 490, 491
Bse1I	ACTGG	3 cut(s)	148, 202, 262
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	3 cut(s)	92, 196, 346
BseLI	CCNNNNNNNGG	3 cut(s)	108, 490, 491
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	3 cut(s)	148, 202, 262
BseXI	GCAGC	5 cut(s)	553, 575, 598, 604, 607
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	5, 605
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	108, 490, 491
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	5, 605
Bso31I	GGTCTC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	4 cut(s)	63, 72, 99, 615
BspANI	GGCC	2 cut(s)	5, 605
BspCNI	CTCAG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	426
BsrI	ACTGG	3 cut(s)	148, 202, 262
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	1 cut(s)	381
Bst6I	CTCTTC	3 cut(s)	576, 587, 594
BstC8I	GCNNGC	5 cut(s)	67, 180, 392, 478, 561
BstDEI	CTNAG	3 cut(s)	350, 378, 636
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	92, 196, 346
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 71, 556, 611, 617, 620
BstNSI	RCATGY	1 cut(s)	182
BstV1I	GCAGC	5 cut(s)	553, 575, 598, 604, 607
BsuRI	GGCC	2 cut(s)	5, 605
BtgI	CCRYGG	1 cut(s)	485
BtsCI	GGATG	3 cut(s)	92, 196, 346
BtsI	GCAGTG	2 cut(s)	328, 418
BtsIMutI	CAGTG	3 cut(s)	328, 347, 418
Cac8I	GCNNGC	5 cut(s)	67, 180, 392, 478, 561
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	214
CviAII	CATG	3 cut(s)	179, 281, 358
DdeI	CTNAG	3 cut(s)	350, 378, 636
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	576, 587, 594
EarI	CTCTTC	3 cut(s)	576, 587, 594
Eco31I	GGTCTC	1 cut(s)	426
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	498, 563
EcoRV	GATATC	1 cut(s)	433
FaeI	CATG	3 cut(s)	182, 284, 361
FaiI	YATR	8 cut(s)	122, 180, 237, 282, 359, 402, 408, 455
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	3 cut(s)	178, 280, 357
FauI	CCCGC	2 cut(s)	70, 79
Fnu4HI	GCNGC	6 cut(s)	564, 567, 612, 615, 618, 621
FokI	GGATG	3 cut(s)	79, 203, 353
Fsp4HI	GCNGC	6 cut(s)	564, 567, 612, 615, 618, 621
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	6 cut(s)	564, 567, 612, 615, 618, 621
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	5, 605
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	214
Hin1II	CATG	3 cut(s)	182, 284, 361
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	380
Hpy188I	TCNGA	3 cut(s)	86, 204, 517
Hpy188III	TCNNGA	2 cut(s)	163, 248
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	6 cut(s)	224, 233, 310, 355, 484, 646
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 71, 556, 611, 617, 620
HpyF3I	CTNAG	3 cut(s)	350, 378, 636
Hsp92II	CATG	3 cut(s)	182, 284, 361
Kzo9I	GATC	1 cut(s)	381
LpnPI	CCDG	9 cut(s)	129, 183, 201, 243, 402, 441, 453, 488, 490
Lsp1109I	GCAGC	5 cut(s)	553, 575, 598, 604, 607
LweI	GCATC	4 cut(s)	118, 181, 433, 634
MaeI	CTAG	1 cut(s)	533
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	7 cut(s)	548, 556, 593, 598, 601, 604, 611
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	45, 79, 132
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	1 cut(s)	227
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	566, 617
MspI	CCGG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	132
MwoI	GCNNNNNNNGC	6 cut(s)	11, 71, 556, 611, 617, 620
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	3 cut(s)	182, 284, 361
NlaIV	GGNNCC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	243
PkrI	GCNGC	6 cut(s)	565, 568, 613, 616, 619, 622
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	6 cut(s)	564, 567, 612, 615, 618, 621
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	4 cut(s)	118, 181, 433, 634
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	161, 248
SmoI	CTYRAG	2 cut(s)	161, 248
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	3 cut(s)	45, 79, 132
SsiI	CCGC	4 cut(s)	63, 72, 99, 615
SspMI	CTAG	1 cut(s)	533
TaqI	TCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	45, 79, 132
TauI	GCSGC	1 cut(s)	617
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	3 cut(s)	328, 354, 418
TseI	GCWGC	5 cut(s)	563, 566, 611, 617, 620
TspDTI	ATGAA	3 cut(s)	221, 252, 374
TspGWI	ACGGA	2 cut(s)	124, 502
TspRI	CASTG	3 cut(s)	328, 354, 418
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.