Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007744

Physical Location & Seq

Genomic Coordinates Reverse (-)

21623179 .. 21626701

Gene Structure 3523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAGGCCGAACATTGTTACCGAGGCTGGGGTTCAAACTCGAGTTGGACAGTGGTGGAATGCCATACCTTTCCTCACGTCATCGGTGGTGGTAGTTTGTGGGGTCATTTACCTGATATGCCTCTTAACTGGATATGACACTTTTTATGAAGTATGCTTCTTACCCTCGGCAATCATATCGAGGTTCCAAGTTTATAGGTTTTATACAGCCATTATTTTCCATGGATCACTGCTTCATGTTCTGTTCAACATGATGGCATTGGTTCCTATGGGCTCTGAGCTGGAGAGAATCATGGGATCTGTCCGTTTGCTTTACCTAACAGTTTTGCTGGCAACGACCAATGCCGTATTGCATCTTCTTATAGCATCCTTGGCGGGATATAATCCCTTCTACCAATATGATCATCTCATGAATGAATGCGCCATTGGATTTTCTGGAATCTTGTTTTCTATGATTGTCATAGAGACAAGTCTCAGTGGAGTTACCTCTAGAAGTGTGTTTGGTCTCTTCAACGTTCCCGCTAAACTGTATCCGTGGATCTTACTAATAGTATTCCAGCTTCTCATGACAAATGTTTCACTGCTTGGGCATCTATGCGGCATCCTGTCTGGATTTTCATATTCTTATGGCCTCTTCAATTTCTTGATGCCTGGCTCTTCATTTTTTACCACCATTGAGTCAGCCTCCTGGATGTCTAGCTTCATTAGGCGACCCAAGTTCATTATGTGTACTGGCGGGAATCCTTCCAGCTATATTCCCACTTATTCTGCACAAAACACAACATCCAGTGGTTTCTCTACAGGAAATGCTTGGAGATCCTTGTCTTCATGGTTGCCACAGAGGGAAGCATCTAATCAGTCTTCTGAGGACAGTAGATTTCCGGGGAGAGGTAGAACTCTTAGCACTGCCCGAGATCCTACTGCTCCAGCTGGAGAAACAGACCCAAACCTCCATGCTAGACTGCTGGAAGATAGCAGCTCTCCAGACCGCCTTTCTGATGCAACTGTCAACACCGTGGCAGATTCAAGACAAGCGCCAATAGCTAATGCAGCAGTCCTGCCCCAATCCCAGGGTCGTGTTGCTGCTTCCGAAGAACAAATCCAGAAACTCGTAGCCATGGGCTTTGACAGGACACAAGTGGAAGTGGCGCTTGCTGCTGCCGACGATGATCTCACCGTAGCAGTGGAGATCCTAATGAGCCAACAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid UBA

Protein Analysis

403

Amino Acids

44.14

Weight (kDa)

5.7

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DER1	PF04511	45 - 232	4.1e-07	Der1-like family
Rhomboid	PF01694	85 - 236	1e-27	Rhomboid domain
UBA	PF00627	387 - 421	1.1e-07	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58460 AT3G58460
fragaria_vesca	FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260
malus_domestica	MD12G1049100.v1.1 MD14G1048000.v1.1
prunus_persica	Prupe.7G087100_v2.0.a1
pyrus_communis	pycom12g04400 pycom14g03950
rosa_chinensis	RchiOBHm_Chr3g0477721
rosa_laevigata	RLG00000023695
rosa_multiflora	Rmu_sc0006187.1_g000017
rosa_roxburghii	Rroxscaffold_6G00403720
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213200 Rh3BG246900 Rh3CG240700 Rh3DG240000
rosa_wichuraiana	Rw3G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	374, 519, 597, 735, 988
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	6 cut(s)	232, 304, 545, 810, 908, 1183
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	3 cut(s)	27, 887, 1069
AgsI	TTSAA	5 cut(s)	35, 247, 511, 637, 1026
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	3 cut(s)	649, 686, 1068
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	7 cut(s)	280, 559, 699, 750, 929, 978, 1043
AluI	AGCT	7 cut(s)	280, 559, 699, 750, 929, 978, 1043
Alw26I	GTCTC	3 cut(s)	458, 476, 509
AlwI	GGATC	6 cut(s)	232, 304, 545, 810, 908, 1183
Ama87I	CYCGRG	2 cut(s)	39, 909
AoxI	GGCC	2 cut(s)	5, 628
ApeKI	GCWGC	5 cut(s)	975, 1049, 1082, 1154, 1157
AspLEI	GCGC	3 cut(s)	422, 1036, 1150
AsuC2I	CCSGG	1 cut(s)	882
AsuHPI	GGTGA	1 cut(s)	1165
AvaI	CYCGRG	2 cut(s)	39, 909
BanII	GRGCYC	1 cut(s)	275
BarI	GAAGNNNNNNTAC	4 cut(s)	339, 371, 543, 575
BbsI	GAAGAC	2 cut(s)	816, 852
BbvI	GCAGC	5 cut(s)	987, 1061, 1069, 1141, 1144
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	329
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BciT130I	CCWGG	3 cut(s)	651, 688, 1070
BciVI	GTATCC	1 cut(s)	540
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	882
BcoDI	GTCTC	3 cut(s)	458, 476, 509
BfaI	CTAG	3 cut(s)	489, 696, 957
BfmI	CTRYAG	1 cut(s)	798
BfoI	RGCGCY	2 cut(s)	1037, 1151
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	6 cut(s)	598, 976, 1050, 1083, 1155, 1158
BlsI	GCNGC	6 cut(s)	599, 977, 1051, 1084, 1156, 1159
Bme1390I	CCNGG	4 cut(s)	651, 688, 882, 1070
BmeT110I	CYCGRG	2 cut(s)	39, 909
BmgBI	CACGTC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	185, 264
BmrFI	CCNGG	4 cut(s)	651, 688, 882, 1070
BmsI	GCATC	7 cut(s)	361, 374, 598, 609, 636, 857, 988
BpiI	GAAGAC	2 cut(s)	816, 852
BplI	GAGNNNNNCTC	2 cut(s)	668, 700
BpmI	CTGGAG	4 cut(s)	302, 909, 951, 966
BpuMI	CCSGG	1 cut(s)	882
BsaI	GGTCTC	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 887, 1069
Bse1I	ACTGG	3 cut(s)	133, 736, 786
BseBI	CCWGG	3 cut(s)	651, 688, 1070
BseGI	GGATG	4 cut(s)	365, 600, 696, 782
BseLI	CCNNNNNNNGG	3 cut(s)	27, 887, 1069
BseMII	CTCAG	3 cut(s)	267, 487, 855
BseNI	ACTGG	3 cut(s)	133, 736, 786
BseXI	GCAGC	5 cut(s)	987, 1061, 1069, 1141, 1144
BseYI	CCCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	753
BshFI	GGCC	2 cut(s)	7, 630
BsiHKCI	CYCGRG	2 cut(s)	39, 909
BsiSI	CCGG	1 cut(s)	881
BslI	CCNNNNNNNGG	3 cut(s)	27, 887, 1069
BsmAI	GTCTC	3 cut(s)	458, 476, 509
BsmI	GAATGC	2 cut(s)	64, 422
BsnI	GGCC	2 cut(s)	7, 630
Bso31I	GGTCTC	1 cut(s)	509
BsoBI	CYCGRG	2 cut(s)	39, 909
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	8 cut(s)	224, 296, 400, 537, 815, 913, 1168, 1188
Bsp19I	CCATGG	2 cut(s)	220, 1116
BspACI	CCGC	5 cut(s)	374, 519, 597, 735, 988
BspANI	GGCC	2 cut(s)	7, 630
BspCNI	CTCAG	3 cut(s)	268, 486, 856
BspHI	TCATGA	2 cut(s)	408, 564
BspLI	GGNNCC	2 cut(s)	185, 264
BspPI	GGATC	6 cut(s)	232, 304, 545, 810, 908, 1183
BspQI	GCTCTTC	1 cut(s)	661
BspTNI	GGTCTC	1 cut(s)	509
BsrI	ACTGG	3 cut(s)	133, 736, 786
BssMI	GATC	8 cut(s)	224, 296, 400, 537, 815, 913, 1168, 1188
BssT1I	CCWWGG	3 cut(s)	220, 369, 1116
Bst2UI	CCWGG	3 cut(s)	651, 688, 1070
Bst4CI	ACNGT	7 cut(s)	51, 322, 528, 872, 1006, 1015, 1177
Bst6I	CTCTTC	3 cut(s)	512, 638, 661
BstC8I	GCNNGC	2 cut(s)	330, 1152
BstDEI	CTNAG	4 cut(s)	276, 473, 864, 899
BstDSI	CCRYGG	4 cut(s)	220, 533, 1014, 1116
BstF5I	GGATG	4 cut(s)	365, 600, 696, 782
BstH2I	RGCGCY	2 cut(s)	1037, 1151
BstHHI	GCGC	3 cut(s)	422, 1036, 1150
BstKTI	GATC	8 cut(s)	227, 299, 403, 540, 818, 916, 1171, 1191
BstMAI	GTCTC	3 cut(s)	458, 476, 509
BstMBI	GATC	8 cut(s)	224, 296, 400, 537, 815, 913, 1168, 1188
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 1040, 1049, 1154
BstNI	CCWGG	3 cut(s)	651, 688, 1070
BstSCI	CCNGG	4 cut(s)	649, 686, 880, 1068
BstSFI	CTRYAG	1 cut(s)	798
BstV1I	GCAGC	5 cut(s)	987, 1061, 1069, 1141, 1144
BstV2I	GAAGAC	2 cut(s)	816, 852
BstX2I	RGATCY	5 cut(s)	296, 537, 815, 913, 1188
BstYI	RGATCY	5 cut(s)	296, 537, 815, 913, 1188
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	7, 630
BtgI	CCRYGG	4 cut(s)	220, 533, 1014, 1116
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	4 cut(s)	365, 600, 696, 782
BtsI	GCAGTG	4 cut(s)	227, 578, 903, 1188
BtsIMutI	CAGTG	7 cut(s)	56, 227, 481, 578, 793, 903, 1188
Cac8I	GCNNGC	2 cut(s)	330, 1152
CciI	TCATGA	2 cut(s)	408, 564
CfoI	GCGC	3 cut(s)	422, 1036, 1150
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	9 cut(s)	221, 236, 250, 292, 409, 565, 828, 953, 1117
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	4 cut(s)	276, 473, 864, 899
DpnI	GATC	8 cut(s)	226, 298, 402, 539, 817, 915, 1170, 1190
DpnII	GATC	8 cut(s)	224, 296, 400, 537, 815, 913, 1168, 1188
Eam1104I	CTCTTC	3 cut(s)	512, 638, 661
EarI	CTCTTC	3 cut(s)	512, 638, 661
Eco130I	CCWWGG	3 cut(s)	220, 369, 1116
Eco24I	GRGCYC	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	509
Eco88I	CYCGRG	2 cut(s)	39, 909
EcoRII	CCWGG	3 cut(s)	649, 686, 1068
EcoT14I	CCWWGG	3 cut(s)	220, 369, 1116
EcoT38I	GRGCYC	1 cut(s)	275
ErhI	CCWWGG	3 cut(s)	220, 369, 1116
FaeI	CATG	9 cut(s)	224, 239, 253, 295, 412, 568, 831, 956, 1120
FalI	AAGNNNNNCTT	2 cut(s)	1134, 1166
FatI	CATG	9 cut(s)	220, 235, 249, 291, 408, 564, 827, 952, 1116
FauI	CCCGC	3 cut(s)	367, 526, 728
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	6 cut(s)	598, 976, 1050, 1083, 1155, 1158
FokI	GGATG	4 cut(s)	352, 587, 703, 769
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	6 cut(s)	598, 976, 1050, 1083, 1155, 1158
FspBI	CTAG	3 cut(s)	489, 696, 957
GlaI	GCGC	3 cut(s)	421, 1035, 1149
GluI	GCNGC	6 cut(s)	598, 976, 1050, 1083, 1155, 1158
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	4 cut(s)	302, 909, 951, 966
HaeII	RGCGCY	2 cut(s)	1037, 1151
HaeIII	GGCC	2 cut(s)	7, 630
HapII	CCGG	1 cut(s)	881
HhaI	GCGC	3 cut(s)	422, 1036, 1150
Hin1II	CATG	9 cut(s)	224, 239, 253, 295, 412, 568, 831, 956, 1120
Hin6I	GCGC	3 cut(s)	420, 1034, 1148
HinP1I	GCGC	3 cut(s)	420, 1034, 1148
HincII	GTYRAC	1 cut(s)	1009
HindII	GTYRAC	1 cut(s)	1009
HinfI	GANTC	5 cut(s)	288, 438, 677, 739, 1022
HpaII	CCGG	1 cut(s)	881
HphI	GGTGA	1 cut(s)	1165
Hpy166II	GTNNAC	2 cut(s)	729, 1009
Hpy188I	TCNGA	4 cut(s)	277, 865, 997, 1090
Hpy188III	TCNNGA	9 cut(s)	409, 435, 489, 565, 609, 643, 983, 1026, 1102
Hpy8I	GTNNAC	2 cut(s)	729, 1009
Hpy99I	CGWCG	1 cut(s)	1166
HpyAV	CCTTC	2 cut(s)	397, 753
HpyCH4III	ACNGT	7 cut(s)	51, 322, 528, 872, 1006, 1015, 1177
HpyCH4IV	ACGT	2 cut(s)	77, 513
HpyCH4V	TGCA	4 cut(s)	352, 770, 1001, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 1040, 1049, 1154
HpyF3I	CTNAG	4 cut(s)	276, 473, 864, 899
HpySE526I	ACGT	2 cut(s)	77, 513
Hsp92II	CATG	9 cut(s)	224, 239, 253, 295, 412, 568, 831, 956, 1120
HspAI	GCGC	3 cut(s)	420, 1034, 1148
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	8 cut(s)	224, 296, 400, 537, 815, 913, 1168, 1188
LguI	GCTCTTC	1 cut(s)	661
LmnI	GCTCC	1 cut(s)	928
Lsp1109I	GCAGC	5 cut(s)	987, 1061, 1069, 1141, 1144
LweI	GCATC	7 cut(s)	361, 374, 598, 609, 636, 857, 988
MaeI	CTAG	3 cut(s)	489, 696, 957
MaeII	ACGT	2 cut(s)	77, 513
MaeIII	GTNAC	2 cut(s)	16, 481
MalI	GATC	8 cut(s)	226, 298, 402, 539, 817, 915, 1170, 1190
MboI	GATC	8 cut(s)	224, 296, 400, 537, 815, 913, 1168, 1188
MboII	GAAGA	8 cut(s)	347, 499, 625, 648, 816, 852, 980, 1103
MflI	RGATCY	5 cut(s)	296, 537, 815, 913, 1188
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	1 cut(s)	637
MlyI	GAGTC	1 cut(s)	686
MmeI	TCCRAC	1 cut(s)	25
MseI	TTAA	2 cut(s)	125, 1210
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	1 cut(s)	881
MspR9I	CCNGG	4 cut(s)	651, 688, 882, 1070
Mva1269I	GAATGC	2 cut(s)	64, 422
MvaI	CCWGG	3 cut(s)	651, 688, 1070
MwoI	GCNNNNNNNGC	4 cut(s)	371, 1040, 1049, 1154
NciI	CCSGG	1 cut(s)	882
NcoI	CCATGG	2 cut(s)	220, 1116
NdeII	GATC	8 cut(s)	224, 296, 400, 537, 815, 913, 1168, 1188
NlaIII	CATG	9 cut(s)	224, 239, 253, 295, 412, 568, 831, 956, 1120
NlaIV	GGNNCC	2 cut(s)	185, 264
NmeAIII	GCCGAG	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	39
PagI	TCATGA	2 cut(s)	408, 564
PasI	CCCWGGG	1 cut(s)	1069
PciSI	GCTCTTC	1 cut(s)	661
PctI	GAATGC	2 cut(s)	64, 422
PfeI	GAWTC	4 cut(s)	288, 438, 739, 1022
PfoI	TCCNGGA	1 cut(s)	686
PkrI	GCNGC	6 cut(s)	599, 977, 1051, 1084, 1156, 1159
PleI	GAGTC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	685
Psp1406I	AACGTT	1 cut(s)	513
Psp6I	CCWGG	3 cut(s)	649, 686, 1068
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	3 cut(s)	649, 686, 1068
PspN4I	GGNNCC	2 cut(s)	185, 264
PspXI	VCTCGAGB	1 cut(s)	39
PsuI	RGATCY	5 cut(s)	296, 537, 815, 913, 1188
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
SapI	GCTCTTC	1 cut(s)	661
SaqAI	TTAA	2 cut(s)	125, 1210
SatI	GCNGC	6 cut(s)	598, 976, 1050, 1083, 1155, 1158
Sau3AI	GATC	8 cut(s)	224, 296, 400, 537, 815, 913, 1168, 1188
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	4 cut(s)	651, 688, 882, 1070
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	7 cut(s)	361, 374, 598, 609, 636, 857, 988
SfcI	CTRYAG	1 cut(s)	798
Sfr274I	CTCGAG	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	1 cut(s)	637
SsiI	CCGC	5 cut(s)	374, 519, 597, 735, 988
SspMI	CTAG	3 cut(s)	489, 696, 957
StyD4I	CCNGG	4 cut(s)	649, 686, 880, 1068
StyI	CCWWGG	3 cut(s)	220, 369, 1116
TaaI	ACNGT	7 cut(s)	51, 322, 528, 872, 1006, 1015, 1177
TaiI	ACGT	2 cut(s)	80, 516
TaqI	TCGA	2 cut(s)	40, 179
TasI	AATT	1 cut(s)	637
TatI	WGTACW	1 cut(s)	728
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	4 cut(s)	288, 438, 739, 1022
Tru1I	TTAA	2 cut(s)	125, 1210
Tru9I	TTAA	2 cut(s)	125, 1210
TscAI	CASTG	7 cut(s)	56, 234, 481, 585, 793, 910, 1188
TseI	GCWGC	5 cut(s)	975, 1049, 1082, 1154, 1157
TspDTI	ATGAA	9 cut(s)	162, 224, 425, 429, 606, 648, 691, 709, 816
TspGWI	ACGGA	2 cut(s)	293, 522
TspRI	CASTG	7 cut(s)	56, 234, 481, 585, 793, 910, 1188
XbaI	TCTAGA	1 cut(s)	488
XhoI	CTCGAG	1 cut(s)	39
XspI	CTAG	3 cut(s)	489, 696, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.