RLG00000023695

Der1-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0007744
Physical Location & Seq
Forward (+)
27186670 .. 27191204
4535 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023695

Sequence Viewer

Length: 1173 bp
ATGAGGATGAATTTGTACTCGTCATTTAGAGATAGTATCGGTGTTGCGTTAAATTTGGAGTGGGCAGAAGCAGGAGTGCAGACTAGGTTGGCACAATGGTGGGAGGGTCTTCCTTTCCTTACTTCTGCGGTGGTTGTTGTTTGCACAACTATTTACTTGGTTTGCCTTTTGGCTGGATACGACTCCTTCTATGAAATATGCTTTTTGCCATCTGCAGTTATCTCACGATTCCAAGTGTACAGGATTTTCACTGCTATTCTGTTTCATGGTTCGCTGCTTCATGTGTTGTTCAACATGATGGCATTGGTTCCTTTGGGTTCTGAGTTGGAGAGAATTATGGGATCTGTCCGCTTGTTGTACATAATCATTCTGTTGGCTACAACCAATGCGCTGCTCCATCTTATGATTGCACTTTTGGTGGCCTATAATCCTATTAAGCCTTTTGACTATTTGTTGCATGAGTGTGCAATAGGCTTCTCAGGAATCTTGTTTTCTATGATTGTAATAGAGACAAGTCTGAGTGGACAGCAATACAGAAGTGTGTTTGGGCTCTTTAATGTGCCTGCTAAATGGTATGCATGGATCTTACTGGTAGTGTTCCAACTTGTTATGTCTAATGTTTCATTACTGGGACACCTGTGTGGTATTCTGTCTGGCTTCGCATATAGTTATGGCTTGTTCAATTTCCTCATTCCTGGACCATCCTTCTATTCCAAAATTGAGGCCTCCTCGTTGCTTTCAACTTGTGTGAGGCGGCCCAAATTTATTTTGTGCACTGGTGGAAATCCCTCTGCCTTCATCCCTACGTATTCAAGCCAAGGTACCACGTCTAGTGGATTATTTTCGGGAAATTTGTGGAGAAACTTATCTTCATGGATCCCACAGAGGGAAACATCTTCACAGGCAACACAAGACAGTCACATATTTCCTGGGAGGGGTAGGACACTGGGGTCCGCTCAAGGACGGCAGTTATCTGATGGAAGGCAAACAGTAAATAATACGGTGGCAGCTGGAGCTGAAATTCCTGTTCACCATCAGGATTATCTGGCTTCTGAAGAAGAAATACAAAAGCTTGTATCAATGGGTTTTGAAAGGACACAGGTTGAAGTTGCACTAGCAGCTGCAGATGGTGATATTAATGTGGCAGTCGAAATTCTGAGCCAACAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid UBA

Protein Analysis

391

Amino Acids

43.0

Weight (kDa)

6.24

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 37 - 224 1.4e-07 Der1-like family
Rhomboid PF01694 77 - 228 1.3e-26 Rhomboid domain
UBA PF00627 352 - 386 9.4e-10 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 949
Acc65I GGTACC 1 cut(s) 821
AccB1I GGYRCC 1 cut(s) 821
AccBSI CCGCTC 1 cut(s) 956
AciI CCGC 4 cut(s) 128, 349, 754, 954
AclWI GGATC 4 cut(s) 349, 590, 871, 884
AcsI RAATTY 6 cut(s) 10, 52, 761, 850, 1020, 1152
AcuI CTGAAG 1 cut(s) 1074
AfaI GTAC 4 cut(s) 17, 239, 359, 823
AfiI CCNNNNNNNGG 2 cut(s) 886, 935
AgsI TTSAA 6 cut(s) 292, 682, 741, 813, 1091, 1106
AjiI CACGTC 1 cut(s) 828
AjnI CCWGG 2 cut(s) 694, 928
AleI CACNNNNGTG 2 cut(s) 97, 639
AluBI AGCT 4 cut(s) 1010, 1016, 1072, 1121
AluI AGCT 4 cut(s) 1010, 1016, 1072, 1121
Alw21I GWGCWC 1 cut(s) 776
Alw26I GTCTC 1 cut(s) 503
Alw44I GTGCAC 1 cut(s) 772
AlwI GGATC 4 cut(s) 349, 590, 871, 884
AoxI GGCC 3 cut(s) 420, 723, 755
ApaLI GTGCAC 1 cut(s) 772
ApeKI GCWGC 5 cut(s) 274, 391, 1007, 1118, 1121
ApoI RAATTY 6 cut(s) 10, 52, 761, 850, 1020, 1152
AseI ATTAAT 1 cut(s) 1137
Asp718I GGTACC 1 cut(s) 821
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 3 cut(s) 698, 756, 951
AsuHPI GGTGA 2 cut(s) 1022, 1142
AvaII GGWCC 2 cut(s) 698, 951
BaeGI GKGCMC 1 cut(s) 776
BamHI GGATCC 1 cut(s) 876
BanI GGYRCC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 552
BarI GAAGNNNNNNTAC 2 cut(s) 1047, 1079
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 776
BbvI GCAGC 5 cut(s) 261, 378, 1019, 1108, 1130
BccI CCATC 7 cut(s) 217, 292, 405, 709, 971, 1041, 1121
BceAI ACGGC 1 cut(s) 980
BciT130I CCWGG 2 cut(s) 696, 930
BciVI GTATCC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 503
BfaI CTAG 3 cut(s) 84, 831, 1115
BfmI CTRYAG 2 cut(s) 213, 1122
BfuI GTATCC 1 cut(s) 170
BisI GCNGC 6 cut(s) 275, 392, 755, 1008, 1119, 1122
BlsI GCNGC 6 cut(s) 276, 393, 756, 1009, 1120, 1123
Bme1390I CCNGG 2 cut(s) 696, 930
Bme18I GGWCC 2 cut(s) 698, 951
BmgBI CACGTC 1 cut(s) 828
BmgT120I GGNCC 3 cut(s) 698, 756, 951
BmiI GGNNCC 4 cut(s) 309, 823, 878, 952
BmrFI CCNGG 2 cut(s) 696, 930
BmrI ACTGGG 2 cut(s) 638, 956
BmuI ACTGGG 2 cut(s) 638, 956
BpiI GAAGAC 1 cut(s) 101
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 1 cut(s) 1032
BpuEI CTTGAG 1 cut(s) 942
BsaAI YACGTR 1 cut(s) 807
BsaJI CCNNGG 2 cut(s) 817, 929
Bsc4I CCNNNNNNNGG 2 cut(s) 886, 935
Bse1I ACTGG 4 cut(s) 594, 633, 781, 951
BseBI CCWGG 2 cut(s) 696, 930
BseDI CCNNGG 2 cut(s) 817, 929
BseGI GGATG 3 cut(s) 12, 701, 798
BseLI CCNNNNNNNGG 2 cut(s) 886, 935
BseMII CTCAG 4 cut(s) 312, 492, 509, 1148
BseNI ACTGG 4 cut(s) 594, 633, 781, 951
BseRI GAGGAG 1 cut(s) 718
BseSI GKGCMC 1 cut(s) 776
BseXI GCAGC 5 cut(s) 261, 378, 1019, 1108, 1130
BsgI GTGCAG 1 cut(s) 98
BshFI GGCC 3 cut(s) 422, 725, 757
BshNI GGYRCC 1 cut(s) 821
BsiHKAI GWGCWC 1 cut(s) 776
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 2 cut(s) 886, 935
BsmAI GTCTC 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 645
BsnI GGCC 3 cut(s) 422, 725, 757
Bsp1286I GDGCHC 2 cut(s) 552, 776
Bsp1407I TGTACA 2 cut(s) 237, 357
Bsp143I GATC 3 cut(s) 341, 582, 876
BspACI CCGC 4 cut(s) 128, 349, 754, 954
BspANI GGCC 3 cut(s) 422, 725, 757
BspCNI CTCAG 4 cut(s) 313, 491, 510, 1149
BspLI GGNNCC 4 cut(s) 309, 823, 878, 952
BspMAI CTGCAG 2 cut(s) 217, 1126
BspPI GGATC 4 cut(s) 349, 590, 871, 884
BspT107I GGYRCC 1 cut(s) 821
BsrBI CCGCTC 1 cut(s) 956
BsrGI TGTACA 2 cut(s) 237, 357
BsrI ACTGG 4 cut(s) 594, 633, 781, 951
BssECI CCNNGG 2 cut(s) 817, 929
BssMI GATC 3 cut(s) 341, 582, 876
BssT1I CCWWGG 1 cut(s) 817
Bst2UI CCWGG 2 cut(s) 696, 930
Bst4CI ACNGT 3 cut(s) 917, 991, 1003
BstAUI TGTACA 2 cut(s) 237, 357
BstBAI YACGTR 1 cut(s) 807
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 4 cut(s) 321, 478, 518, 1157
BstF5I GGATG 3 cut(s) 12, 701, 798
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 3 cut(s) 344, 585, 879
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 3 cut(s) 341, 582, 876
BstMWI GCNNNNNNNGC 2 cut(s) 1013, 1118
BstNI CCWGG 2 cut(s) 696, 930
BstSCI CCNGG 2 cut(s) 694, 928
BstSFI CTRYAG 2 cut(s) 213, 1122
BstSLI GKGCMC 1 cut(s) 776
BstSNI TACGTA 1 cut(s) 807
BstV1I GCAGC 5 cut(s) 261, 378, 1019, 1108, 1130
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 3 cut(s) 341, 582, 876
BstYI RGATCY 3 cut(s) 341, 582, 876
BsuI GTATCC 1 cut(s) 170
BsuRI GGCC 3 cut(s) 422, 725, 757
BtrI CACGTC 1 cut(s) 828
BtsCI GGATG 3 cut(s) 12, 701, 798
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 249, 774, 944
Cac8I GCNNGC 1 cut(s) 564
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 3 cut(s) 698, 756, 951
Csp6I GTAC 4 cut(s) 16, 238, 358, 822
CviAII CATG 6 cut(s) 266, 281, 295, 458, 579, 873
CviQI GTAC 4 cut(s) 16, 238, 358, 822
DdeI CTNAG 4 cut(s) 321, 478, 518, 1157
DpnI GATC 3 cut(s) 343, 584, 878
DpnII GATC 3 cut(s) 341, 582, 876
DrdI GACNNNNNNGTC 1 cut(s) 949
DseDI GACNNNNNNGTC 1 cut(s) 949
Eco105I TACGTA 1 cut(s) 807
Eco130I CCWWGG 1 cut(s) 817
Eco147I AGGCCT 1 cut(s) 725
Eco24I GRGCYC 1 cut(s) 552
Eco47I GGWCC 2 cut(s) 698, 951
Eco57I CTGAAG 1 cut(s) 1074
EcoRII CCWGG 2 cut(s) 694, 928
EcoT14I CCWWGG 1 cut(s) 817
EcoT22I ATGCAT 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 817
FaeI CATG 6 cut(s) 269, 284, 298, 461, 582, 876
FaqI GGGAC 1 cut(s) 645
FatI CATG 6 cut(s) 265, 280, 294, 457, 578, 872
Fnu4HI GCNGC 6 cut(s) 275, 392, 755, 1008, 1119, 1122
FokI GGATG 3 cut(s) 19, 688, 785
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 6 cut(s) 275, 392, 755, 1008, 1119, 1122
FspBI CTAG 3 cut(s) 84, 831, 1115
GlaI GCGC 1 cut(s) 390
GluI GCNGC 6 cut(s) 275, 392, 755, 1008, 1119, 1122
GsuI CTGGAG 1 cut(s) 1032
HaeIII GGCC 3 cut(s) 422, 725, 757
HhaI GCGC 1 cut(s) 391
Hin1II CATG 6 cut(s) 269, 284, 298, 461, 582, 876
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 1070
HinfI GANTC 3 cut(s) 182, 228, 483
HphI GGTGA 2 cut(s) 1022, 1142
Hpy166II GTNNAC 4 cut(s) 238, 524, 774, 1030
Hpy188I TCNGA 5 cut(s) 322, 519, 976, 1054, 1158
Hpy188III TCNNGA 4 cut(s) 225, 480, 846, 1037
Hpy8I GTNNAC 4 cut(s) 238, 524, 774, 1030
HpyAV CCTTC 4 cut(s) 196, 715, 805, 975
HpyCH4III ACNGT 3 cut(s) 917, 991, 1003
HpyCH4IV ACGT 2 cut(s) 806, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 1013, 1118
HpyF3I CTNAG 4 cut(s) 321, 478, 518, 1157
HpySE526I ACGT 2 cut(s) 806, 827
Hsp92II CATG 6 cut(s) 269, 284, 298, 461, 582, 876
HspAI GCGC 1 cut(s) 389
KpnI GGTACC 1 cut(s) 825
Kzo9I GATC 3 cut(s) 341, 582, 876
LmnI GCTCC 2 cut(s) 399, 1013
Lsp1109I GCAGC 5 cut(s) 261, 378, 1019, 1108, 1130
MaeI CTAG 3 cut(s) 84, 831, 1115
MaeII ACGT 2 cut(s) 806, 827
MaeIII GTNAC 1 cut(s) 917
MalI GATC 3 cut(s) 343, 584, 878
MbiI CCGCTC 1 cut(s) 956
MboI GATC 3 cut(s) 341, 582, 876
MboII GAAGA 5 cut(s) 101, 861, 888, 1067, 1070
MflI RGATCY 3 cut(s) 341, 582, 876
MhlI GDGCHC 2 cut(s) 552, 776
MluCI AATT 9 cut(s) 10, 52, 333, 682, 717, 761, 850, 1020, 1152
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 306, 625
MnlI CCTC 9 cut(s) 97, 698, 715, 736, 739, 744, 799, 879, 927
Mph1103I ATGCAT 1 cut(s) 580
MseI TTAA 5 cut(s) 50, 435, 555, 1137, 1171
MslI CAYNNNNRTG 3 cut(s) 97, 462, 639
MspA1I CMGCKG 2 cut(s) 1010, 1121
MspR9I CCNGG 2 cut(s) 696, 930
MvaI CCWGG 2 cut(s) 696, 930
MwoI GCNNNNNNNGC 2 cut(s) 1013, 1118
NdeII GATC 3 cut(s) 341, 582, 876
NlaIII CATG 6 cut(s) 269, 284, 298, 461, 582, 876
NlaIV GGNNCC 4 cut(s) 309, 823, 878, 952
NmuCI GTSAC 1 cut(s) 917
NsiI ATGCAT 1 cut(s) 580
OliI CACNNNNGTG 2 cut(s) 97, 639
PceI AGGCCT 1 cut(s) 725
PfeI GAWTC 2 cut(s) 228, 483
PfoI TCCNGGA 1 cut(s) 694
PkrI GCNGC 6 cut(s) 276, 393, 756, 1009, 1120, 1123
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 807
PshBI ATTAAT 1 cut(s) 1137
Psp6I CCWGG 2 cut(s) 694, 928
PspGI CCWGG 2 cut(s) 694, 928
PspN4I GGNNCC 4 cut(s) 309, 823, 878, 952
PspPI GGNCC 3 cut(s) 698, 756, 951
PstI CTGCAG 2 cut(s) 217, 1126
PsuI RGATCY 3 cut(s) 341, 582, 876
PvuII CAGCTG 2 cut(s) 1010, 1121
RsaI GTAC 4 cut(s) 17, 239, 359, 823
RsaNI GTAC 4 cut(s) 16, 238, 358, 822
RseI CAYNNNNRTG 3 cut(s) 97, 462, 639
SaqAI TTAA 5 cut(s) 50, 435, 555, 1137, 1171
SatI GCNGC 6 cut(s) 275, 392, 755, 1008, 1119, 1122
Sau3AI GATC 3 cut(s) 341, 582, 876
Sau96I GGNCC 3 cut(s) 698, 756, 951
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 696, 930
SduI GDGCHC 2 cut(s) 552, 776
SfcI CTRYAG 2 cut(s) 213, 1122
SinI GGWCC 2 cut(s) 698, 951
SmiMI CAYNNNNRTG 3 cut(s) 97, 462, 639
SmlI CTYRAG 1 cut(s) 957
SmoI CTYRAG 1 cut(s) 957
SnaBI TACGTA 1 cut(s) 807
Sse9I AATT 9 cut(s) 10, 52, 333, 682, 717, 761, 850, 1020, 1152
SseBI AGGCCT 1 cut(s) 725
SsiI CCGC 4 cut(s) 128, 349, 754, 954
SspMI CTAG 3 cut(s) 84, 831, 1115
StuI AGGCCT 1 cut(s) 725
StyD4I CCNGG 2 cut(s) 694, 928
StyI CCWWGG 1 cut(s) 817
TaaI ACNGT 3 cut(s) 917, 991, 1003
TaiI ACGT 2 cut(s) 809, 830
TaqI TCGA 1 cut(s) 1149
TasI AATT 9 cut(s) 10, 52, 333, 682, 717, 761, 850, 1020, 1152
TatI WGTACW 3 cut(s) 15, 237, 357
TauI GCSGC 1 cut(s) 757
TfiI GAWTC 2 cut(s) 228, 483
Tru1I TTAA 5 cut(s) 50, 435, 555, 1137, 1171
Tru9I TTAA 5 cut(s) 50, 435, 555, 1137, 1171
TscAI CASTG 3 cut(s) 256, 781, 951
TseFI GTSAC 1 cut(s) 917
TseI GCWGC 5 cut(s) 274, 391, 1007, 1118, 1121
Tsp45I GTSAC 1 cut(s) 917
TspDTI ATGAA 7 cut(s) 23, 207, 254, 269, 612, 787, 861
TspRI CASTG 3 cut(s) 256, 781, 951
VneI GTGCAC 1 cut(s) 772
VpaK11BI GGWCC 2 cut(s) 698, 951
VspI ATTAAT 1 cut(s) 1137
XapI RAATTY 6 cut(s) 10, 52, 761, 850, 1020, 1152
XspI CTAG 3 cut(s) 84, 831, 1115
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.