Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007744

Physical Location & Seq

Genomic Coordinates Forward (+)

12145202 .. 12150292

Gene Structure 5091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G087100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAGGCCAAACATCGTTTCCGAGGCAGGACTGCAAACTAGGTTGGGGCAATGGTGGGAGAGCATTCCTTTTCTTACTTCTGCGGTGGTTGGCGTGTGTGGAACTGTTTACTTGATCTGTCTCCTGGTTGGATATGACTCCTTTTACGAAATATGCTTTTTGCCCTCTGCAGTTCTATCAAGATTTCAAGTCTACAGGATTTTCACCTCCATTATCTTTCATGGTTCAGTGCTTCATGTATTGTTCAACATGATGGCATTGGTTCCTTTGGGTTCTGAGTTGGAGAGAATCATGGGATCTGTCCGCATGTTGTACATAATCTTTCTTTTGGCCATCAGCAATGCACTGTTTCATCTTACGATTGCGCTTTTGGTGGCCTATAATCCCATTCACTCTGATCCGTATCTCATGAATGAATGTGCAATAGGCTTCTCGGGAATCTTGTTTTCTATGATTGTGATAGAGACAAGTCTGAGTGGACACCAGTCTAGAAGTGTCTTTGGACTCTTTAACGTACCTGCTAAATGGTATGTATGGATCTTGCTGGTAGTGTTCCAAGTTGTTATGACAAATGTTTCTTTACTGGGGCACCTATGTGGCATTTTGTCTGGCTTTGCATATACTTACGGATTATTCAATTTCCTCATTCCCGGACCATCCTTCTATTCTACAATTGAGGCCACCTCGTTGCTTTCAACTTGTGTGAGGCGGCCTAAATTTATTTTGTGCACTGGTGGGAATCCTTCAGCCTTCATCCCTACATATTCAAGCCAAGGTACAGCATCTAGTGGATTCTCTGCCGGAAGTGTCTGGAGAAACTTGTCTTCATGGATTCCACAGAGGGAAACATCTGCACAGTCAGCACAAGACGGTCACATGTTTCCTGGGAGGGGAAGAACACTTGGATCTGGTCGAAATACTGCTTCTGATGCTAATTCAGAATCAAACTTACAGGTTAGACTTTTGGATAATAGCAACTCAGAACATCCATCAGACATGGCAGTTATTGGTACAGGACAGCAGTTATCTGATGGAAGGCGGTCAACCCTAAATAATACATCAGTCGCTGCAGCAGAAGTTCCTGTGCACCATCAGGATTATGTTATTTCTGAAGAAGAAATCCAGAAGCTTGTATCAATGGGCTTTGAAAGGACACAGGTAGAAGTTGCTCTTGCAGCTGCAGATGGGGATCTTAATGTGGCAGTGGAAATTCTGAGCCAACAGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid UBA

Protein Analysis

410

Amino Acids

44.65

Weight (kDa)

5.79

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58460 AT3G58460
fragaria_vesca	FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260
malus_domestica	MD12G1049100.v1.1 MD14G1048000.v1.1
prunus_persica	Prupe.7G087100_v2.0.a1
pyrus_communis	pycom12g04400 pycom14g03950
rosa_chinensis	RchiOBHm_Chr3g0477721
rosa_laevigata	RLG00000023695
rosa_multiflora	Rmu_sc0006187.1_g000017
rosa_roxburghii	Rroxscaffold_6G00403720
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213200 Rh3BG246900 Rh3CG240700 Rh3DG240000
rosa_wichuraiana	Rw3G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	588
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	4 cut(s)	83, 304, 709, 1039
AclWI	GGATC	5 cut(s)	304, 392, 545, 913, 1197
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	716, 1209
AcuI	CTGAAG	2 cut(s)	729, 1131
AfaI	GTAC	4 cut(s)	314, 516, 778, 1012
AfiI	CCNNNNNNNGG	1 cut(s)	890
AflIII	ACRYGT	1 cut(s)	876
AgsI	TTSAA	6 cut(s)	188, 247, 637, 696, 768, 1148
AjnI	CCWGG	2 cut(s)	123, 883
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	594
AluBI	AGCT	2 cut(s)	1129, 1178
AluI	AGCT	2 cut(s)	1129, 1178
Alw21I	GWGCWC	2 cut(s)	731, 1089
Alw26I	GTCTC	2 cut(s)	125, 458
Alw44I	GTGCAC	2 cut(s)	727, 1085
AlwI	GGATC	5 cut(s)	304, 392, 545, 913, 1197
AlwNI	CAGNNNCTG	1 cut(s)	1067
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	5 cut(s)	5, 330, 375, 678, 710
ApaLI	GTGCAC	2 cut(s)	727, 1085
ApeKI	GCWGC	4 cut(s)	1067, 1070, 1175, 1178
ApoI	RAATTY	2 cut(s)	716, 1209
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	651
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	653
BaeGI	GKGCMC	3 cut(s)	591, 731, 1089
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	588
BbsI	GAAGAC	1 cut(s)	816
Bbv12I	GWGCWC	2 cut(s)	731, 1089
BbvI	GCAGC	4 cut(s)	1054, 1082, 1165, 1187
BccI	CCATC	7 cut(s)	247, 341, 664, 997, 1025, 1098, 1178
BciT130I	CCWGG	2 cut(s)	125, 885
BcnI	CCSGG	1 cut(s)	651
BcoDI	GTCTC	2 cut(s)	125, 458
BfaI	CTAG	3 cut(s)	39, 489, 786
BfmI	CTRYAG	4 cut(s)	168, 193, 1068, 1179
BfuAI	ACCTGC	1 cut(s)	526
BglI	GCCNNNNNGGC	1 cut(s)	1224
BisI	GCNGC	5 cut(s)	710, 1068, 1071, 1176, 1179
BlsI	GCNGC	5 cut(s)	711, 1069, 1072, 1177, 1180
Bme1390I	CCNGG	3 cut(s)	125, 651, 885
Bme18I	GGWCC	1 cut(s)	653
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	2 cut(s)	264, 590
BmrFI	CCNGG	3 cut(s)	125, 651, 885
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	2 cut(s)	791, 919
BmuI	ACTGGG	1 cut(s)	593
BoxI	GACNNNNGTC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	816
BplI	GAGNNNNNCTC	2 cut(s)	668, 700
BpmI	CTGGAG	1 cut(s)	832
BpuMI	CCSGG	1 cut(s)	651
BsaBI	GATNNNNATC	2 cut(s)	402, 1188
BsaJI	CCNNGG	3 cut(s)	21, 772, 884
Bsc4I	CCNNNNNNNGG	1 cut(s)	890
Bse1I	ACTGG	3 cut(s)	484, 588, 736
Bse3DI	GCAATG	2 cut(s)	56, 346
Bse8I	GATNNNNATC	2 cut(s)	402, 1188
BseBI	CCWGG	2 cut(s)	125, 885
BseDI	CCNNGG	3 cut(s)	21, 772, 884
BseGI	GGATG	3 cut(s)	656, 753, 985
BseJI	GATNNNNATC	2 cut(s)	402, 1188
BseLI	CCNNNNNNNGG	1 cut(s)	890
BseMI	GCAATG	2 cut(s)	56, 346
BseMII	CTCAG	4 cut(s)	267, 464, 993, 1205
BseNI	ACTGG	3 cut(s)	484, 588, 736
BseSI	GKGCMC	3 cut(s)	591, 731, 1089
BseXI	GCAGC	4 cut(s)	1054, 1082, 1165, 1187
BsgI	GTGCAG	1 cut(s)	837
BshFI	GGCC	5 cut(s)	7, 332, 377, 680, 712
BshNI	GGYRCC	1 cut(s)	588
BsiHKAI	GWGCWC	2 cut(s)	731, 1089
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	651, 801
BslI	CCNNNNNNNGG	1 cut(s)	890
BsmAI	GTCTC	2 cut(s)	125, 458
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	5 cut(s)	7, 332, 377, 680, 712
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	591, 731, 1089
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	6 cut(s)	114, 296, 397, 537, 905, 1189
BspACI	CCGC	4 cut(s)	83, 304, 709, 1039
BspANI	GGCC	5 cut(s)	7, 332, 377, 680, 712
BspCNI	CTCAG	4 cut(s)	268, 465, 992, 1206
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	264, 590
BspMAI	CTGCAG	3 cut(s)	172, 1072, 1183
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	5 cut(s)	304, 392, 545, 913, 1197
BspT107I	GGYRCC	1 cut(s)	588
BsrDI	GCAATG	2 cut(s)	56, 346
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	3 cut(s)	484, 588, 736
BssECI	CCNNGG	3 cut(s)	21, 772, 884
BssMI	GATC	6 cut(s)	114, 296, 397, 537, 905, 1189
BssT1I	CCWWGG	1 cut(s)	772
Bst2UI	CCWGG	2 cut(s)	125, 885
Bst4CI	ACNGT	4 cut(s)	106, 348, 858, 872
BstAUI	TGTACA	1 cut(s)	312
BstDEI	CTNAG	4 cut(s)	276, 473, 979, 1214
BstF5I	GGATG	3 cut(s)	656, 753, 985
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	6 cut(s)	117, 299, 400, 540, 908, 1192
BstMAI	GTCTC	2 cut(s)	125, 458
BstMBI	GATC	6 cut(s)	114, 296, 397, 537, 905, 1189
BstMWI	GCNNNNNNNGC	4 cut(s)	860, 929, 1175, 1224
BstNI	CCWGG	2 cut(s)	125, 885
BstNSI	RCATGY	2 cut(s)	310, 880
BstPAI	GACNNNNGTC	1 cut(s)	484
BstSCI	CCNGG	3 cut(s)	123, 649, 883
BstSFI	CTRYAG	4 cut(s)	168, 193, 1068, 1179
BstSLI	GKGCMC	3 cut(s)	591, 731, 1089
BstV1I	GCAGC	4 cut(s)	1054, 1082, 1165, 1187
BstV2I	GAAGAC	1 cut(s)	816
BstX2I	RGATCY	4 cut(s)	296, 537, 905, 1189
BstYI	RGATCY	4 cut(s)	296, 537, 905, 1189
BsuRI	GGCC	5 cut(s)	7, 332, 377, 680, 712
BtsCI	GGATG	3 cut(s)	656, 753, 985
BtsI	GCAGTG	1 cut(s)	1209
BtsIMutI	CAGTG	4 cut(s)	234, 344, 729, 1209
BveI	ACCTGC	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	1067
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	653
Csp6I	GTAC	4 cut(s)	313, 515, 777, 1011
CviAII	CATG	9 cut(s)	221, 236, 250, 292, 307, 409, 828, 877, 997
CviQI	GTAC	4 cut(s)	313, 515, 777, 1011
DdeI	CTNAG	4 cut(s)	276, 473, 979, 1214
DpnI	GATC	6 cut(s)	116, 298, 399, 539, 907, 1191
DpnII	GATC	6 cut(s)	114, 296, 397, 537, 905, 1189
EaeI	YGGCCR	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	772
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	2 cut(s)	729, 1131
Eco88I	CYCGRG	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	123, 883
EcoT14I	CCWWGG	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	9 cut(s)	224, 239, 253, 295, 310, 412, 831, 880, 1000
FalI	AAGNNNNNCTT	2 cut(s)	1155, 1187
FatI	CATG	9 cut(s)	220, 235, 249, 291, 306, 408, 827, 876, 996
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	710, 1068, 1071, 1176, 1179
FokI	GGATG	3 cut(s)	643, 740, 972
Fsp4HI	GCNGC	5 cut(s)	710, 1068, 1071, 1176, 1179
FspBI	CTAG	3 cut(s)	39, 489, 786
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	5 cut(s)	710, 1068, 1071, 1176, 1179
GsuI	CTGGAG	1 cut(s)	832
HaeIII	GGCC	5 cut(s)	7, 332, 377, 680, 712
HapII	CCGG	2 cut(s)	651, 801
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	9 cut(s)	224, 239, 253, 295, 310, 412, 831, 880, 1000
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	1 cut(s)	1044
HindII	GTYRAC	1 cut(s)	1044
HindIII	AAGCTT	1 cut(s)	1127
HinfI	GANTC	8 cut(s)	137, 288, 438, 504, 739, 792, 832, 941
HpaII	CCGG	2 cut(s)	651, 801
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	6 cut(s)	109, 193, 479, 729, 1044, 1087
Hpy188III	TCNNGA	7 cut(s)	180, 409, 435, 489, 811, 1094, 1123
Hpy8I	GTNNAC	6 cut(s)	109, 193, 479, 729, 1044, 1087
HpyAV	CCTTC	4 cut(s)	670, 753, 760, 1029
HpyCH4III	ACNGT	4 cut(s)	106, 348, 858, 872
HpyCH4IV	ACGT	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	860, 929, 1175, 1224
HpyF3I	CTNAG	4 cut(s)	276, 473, 979, 1214
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	9 cut(s)	224, 239, 253, 295, 310, 412, 831, 880, 1000
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	6 cut(s)	114, 296, 397, 537, 905, 1189
Lsp1109I	GCAGC	4 cut(s)	1054, 1082, 1165, 1187
LweI	GCATC	2 cut(s)	791, 919
MaeI	CTAG	3 cut(s)	39, 489, 786
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	872
MalI	GATC	6 cut(s)	116, 298, 399, 539, 907, 1191
MboI	GATC	6 cut(s)	114, 296, 397, 537, 905, 1189
MboII	GAAGA	4 cut(s)	816, 906, 1124, 1127
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	4 cut(s)	296, 537, 905, 1189
MhlI	GDGCHC	3 cut(s)	591, 731, 1089
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	5 cut(s)	637, 672, 716, 934, 1209
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	131, 498
MmeI	TCCRAC	2 cut(s)	109, 261
MnlI	CCTC	9 cut(s)	16, 175, 217, 653, 670, 694, 699, 834, 882
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	2 cut(s)	510, 1194
MslI	CAYNNNNRTG	1 cut(s)	594
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	1178
MspI	CCGG	2 cut(s)	651, 801
MspR9I	CCNGG	3 cut(s)	125, 651, 885
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	2 cut(s)	125, 885
MwoI	GCNNNNNNNGC	4 cut(s)	860, 929, 1175, 1224
NciI	CCSGG	1 cut(s)	651
NdeII	GATC	6 cut(s)	114, 296, 397, 537, 905, 1189
NlaIII	CATG	9 cut(s)	224, 239, 253, 295, 310, 412, 831, 880, 1000
NlaIV	GGNNCC	2 cut(s)	264, 590
NmuCI	GTSAC	1 cut(s)	872
NspI	RCATGY	2 cut(s)	310, 880
OliI	CACNNNNGTG	1 cut(s)	594
PagI	TCATGA	1 cut(s)	408
PciI	ACATGT	1 cut(s)	876
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	6 cut(s)	288, 438, 739, 792, 832, 941
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	5 cut(s)	711, 1069, 1072, 1177, 1180
PleI	GAGTC	2 cut(s)	131, 498
PpsI	GAGTC	2 cut(s)	131, 498
PscI	ACATGT	1 cut(s)	876
PshAI	GACNNNNGTC	1 cut(s)	484
Psp6I	CCWGG	2 cut(s)	123, 883
PspGI	CCWGG	2 cut(s)	123, 883
PspN4I	GGNNCC	2 cut(s)	264, 590
PspPI	GGNCC	1 cut(s)	653
PstI	CTGCAG	3 cut(s)	172, 1072, 1183
PstNI	CAGNNNCTG	1 cut(s)	1067
PsuI	RGATCY	4 cut(s)	296, 537, 905, 1189
PvuII	CAGCTG	1 cut(s)	1178
RsaI	GTAC	4 cut(s)	314, 516, 778, 1012
RsaNI	GTAC	4 cut(s)	313, 515, 777, 1011
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	510, 1194
SatI	GCNGC	5 cut(s)	710, 1068, 1071, 1176, 1179
Sau3AI	GATC	6 cut(s)	114, 296, 397, 537, 905, 1189
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	2 cut(s)	131, 498
ScrFI	CCNGG	3 cut(s)	125, 651, 885
SduI	GDGCHC	3 cut(s)	591, 731, 1089
SfaNI	GCATC	2 cut(s)	791, 919
SfcI	CTRYAG	4 cut(s)	168, 193, 1068, 1179
SinI	GGWCC	1 cut(s)	653
SmiMI	CAYNNNNRTG	1 cut(s)	594
Sse9I	AATT	5 cut(s)	637, 672, 716, 934, 1209
SsiI	CCGC	4 cut(s)	83, 304, 709, 1039
SspMI	CTAG	3 cut(s)	39, 489, 786
StyD4I	CCNGG	3 cut(s)	123, 649, 883
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	4 cut(s)	106, 348, 858, 872
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	1 cut(s)	913
TasI	AATT	5 cut(s)	637, 672, 716, 934, 1209
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	712
TfiI	GAWTC	6 cut(s)	288, 438, 739, 792, 832, 941
Tru1I	TTAA	2 cut(s)	510, 1194
Tru9I	TTAA	2 cut(s)	510, 1194
TscAI	CASTG	4 cut(s)	234, 351, 736, 1209
TseFI	GTSAC	1 cut(s)	872
TseI	GCWGC	4 cut(s)	1067, 1070, 1175, 1178
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	7 cut(s)	209, 224, 341, 425, 429, 742, 816
TspGWI	ACGGA	2 cut(s)	390, 642
TspRI	CASTG	4 cut(s)	234, 351, 736, 1209
VneI	GTGCAC	2 cut(s)	727, 1085
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	2 cut(s)	716, 1209
XbaI	TCTAGA	1 cut(s)	488
XceI	RCATGY	2 cut(s)	310, 880
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	3 cut(s)	39, 489, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.