Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006187.1

Orthogroup ID

OG0007744

Physical Location & Seq

Genomic Coordinates Reverse (-)

66293 .. 71478

Gene Structure 5186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006187.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgaggcctaacatcgtttccgaggcaggagtgcagactaggttggcacaatggtgggagggtcttcctttccttacttctgcggtggttgttgtttgcacaactatttacttggtttgcctcttggctggatacgactccttctatgaaatatgctttttgccgtctgcagttatctcacgattccaagtctacaggattttcactgccattctgtttcatggttcgctgcttcatgtgttgttcaacatgatggctttggttcctttgggttctgagttggagagaattatgggatctgtccgcttgttgtacataatcattctgttggctacaaccaatgcgctgctccatcttctaattgcacttttggtggcctataatcctattaagccttttgagtatttgatgcatgagtgtgcaataggcttctcaggaatcttgttttctatgattgtaatagagacaagtctgagtggacagcaatacagaagtgtgtttgggctctttaatgtgcctgctaaatggtatgcatggatcttactggtagtgttccaacttgttatgtctaatgtttcattactgggacacctgtgtggtattctgtctggcttcgcatatagttacggcttgttcaatttcctcattcctggaccatccttctattccaaaattgaggcctcctcgttgctttcaacttgtgtgaggcggcctaaatttattttgtgcactggtggaaatccctctgccttcatccctacgtattcaagccaaggtaccacgtctagtggattgttttcgggaaatttgtggagaaacttatcttcatggatcccacagagggaaacatcttcacaggcaacacaagacagtcacatatttcctgggaggggtaggacactagggtccgctcaaggacggcagttatctgatggaaggcaaacagtaaataatacggtggcagctggagctgaaattcctgttcaccatcaggattatgtggcttctgaagaagaaatacaaaagcttgtatcaatgggttttgaaaggacacaggttgaagttgcactagcagctgcagatggtgatattaatgtggcagtcgaaattctgagccaacagggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid UBA

Protein Analysis

375

Amino Acids

41.25

Weight (kDa)

6.44

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58460 AT3G58460
fragaria_vesca	FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260
malus_domestica	MD12G1049100.v1.1 MD14G1048000.v1.1
prunus_persica	Prupe.7G087100_v2.0.a1
pyrus_communis	pycom12g04400 pycom14g03950
rosa_chinensis	RchiOBHm_Chr3g0477721
rosa_laevigata	RLG00000023695
rosa_multiflora	Rmu_sc0006187.1_g000017
rosa_roxburghii	Rroxscaffold_6G00403720
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213200 Rh3BG246900 Rh3CG240700 Rh3DG240000
rosa_wichuraiana	Rw3G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	904
Acc65I	GGTACC	1 cut(s)	776
AccB1I	GGYRCC	1 cut(s)	776
AccBSI	CCGCTC	1 cut(s)	911
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	4 cut(s)	83, 304, 709, 909
AclWI	GGATC	4 cut(s)	304, 545, 826, 839
AcsI	RAATTY	4 cut(s)	716, 805, 975, 1107
AcuI	CTGAAG	1 cut(s)	1029
AfaI	GTAC	2 cut(s)	314, 778
AfiI	CCNNNNNNNGG	2 cut(s)	841, 890
AgsI	TTSAA	6 cut(s)	247, 637, 696, 768, 1046, 1061
AjiI	CACGTC	1 cut(s)	783
AjnI	CCWGG	2 cut(s)	649, 883
AleI	CACNNNNGTG	2 cut(s)	52, 594
AluBI	AGCT	4 cut(s)	965, 971, 1027, 1076
AluI	AGCT	4 cut(s)	965, 971, 1027, 1076
Alw21I	GWGCWC	1 cut(s)	731
Alw26I	GTCTC	1 cut(s)	458
Alw44I	GTGCAC	1 cut(s)	727
AlwI	GGATC	4 cut(s)	304, 545, 826, 839
AoxI	GGCC	4 cut(s)	5, 375, 678, 710
ApaLI	GTGCAC	1 cut(s)	727
ApeKI	GCWGC	5 cut(s)	229, 346, 962, 1073, 1076
ApoI	RAATTY	4 cut(s)	716, 805, 975, 1107
AseI	ATTAAT	1 cut(s)	1092
Asp718I	GGTACC	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	653, 906
AsuHPI	GGTGA	2 cut(s)	977, 1097
AvaII	GGWCC	2 cut(s)	653, 906
BaeGI	GKGCMC	1 cut(s)	731
BamHI	GGATCC	1 cut(s)	831
BanI	GGYRCC	1 cut(s)	776
BanII	GRGCYC	1 cut(s)	507
BarI	GAAGNNNNNNTAC	2 cut(s)	1002, 1034
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	731
BbvI	GCAGC	5 cut(s)	216, 333, 974, 1063, 1085
BccI	CCATC	6 cut(s)	247, 360, 664, 926, 996, 1076
BceAI	ACGGC	3 cut(s)	148, 643, 935
BciT130I	CCWGG	2 cut(s)	651, 885
BciVI	GTATCC	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	4 cut(s)	39, 786, 902, 1070
BfmI	CTRYAG	3 cut(s)	168, 193, 1077
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	6 cut(s)	230, 347, 710, 963, 1074, 1077
BlsI	GCNGC	6 cut(s)	231, 348, 711, 964, 1075, 1078
Bme1390I	CCNGG	2 cut(s)	651, 885
Bme18I	GGWCC	2 cut(s)	653, 906
BmgBI	CACGTC	1 cut(s)	783
BmgT120I	GGNCC	2 cut(s)	653, 906
BmiI	GGNNCC	4 cut(s)	264, 778, 833, 907
BmrFI	CCNGG	2 cut(s)	651, 885
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	56
BplI	GAGNNNNNCTC	2 cut(s)	668, 700
BpmI	CTGGAG	1 cut(s)	987
BpuEI	CTTGAG	1 cut(s)	897
BsaAI	YACGTR	1 cut(s)	762
BsaJI	CCNNGG	3 cut(s)	21, 772, 884
Bsc4I	CCNNNNNNNGG	2 cut(s)	841, 890
Bse1I	ACTGG	3 cut(s)	549, 588, 736
BseBI	CCWGG	2 cut(s)	651, 885
BseDI	CCNNGG	3 cut(s)	21, 772, 884
BseGI	GGATG	2 cut(s)	656, 753
BseLI	CCNNNNNNNGG	2 cut(s)	841, 890
BseMII	CTCAG	4 cut(s)	267, 447, 464, 1103
BseNI	ACTGG	3 cut(s)	549, 588, 736
BseRI	GAGGAG	1 cut(s)	673
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	5 cut(s)	216, 333, 974, 1063, 1085
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	4 cut(s)	7, 377, 680, 712
BshNI	GGYRCC	1 cut(s)	776
BsiHKAI	GWGCWC	1 cut(s)	731
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	841, 890
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	600
BsnI	GGCC	4 cut(s)	7, 377, 680, 712
Bsp1286I	GDGCHC	2 cut(s)	507, 731
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	296, 537, 831
BspACI	CCGC	4 cut(s)	83, 304, 709, 909
BspANI	GGCC	4 cut(s)	7, 377, 680, 712
BspCNI	CTCAG	4 cut(s)	268, 446, 465, 1104
BspLI	GGNNCC	4 cut(s)	264, 778, 833, 907
BspMAI	CTGCAG	2 cut(s)	172, 1081
BspPI	GGATC	4 cut(s)	304, 545, 826, 839
BspT107I	GGYRCC	1 cut(s)	776
BsrBI	CCGCTC	1 cut(s)	911
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	3 cut(s)	549, 588, 736
BssECI	CCNNGG	3 cut(s)	21, 772, 884
BssMI	GATC	3 cut(s)	296, 537, 831
BssT1I	CCWWGG	1 cut(s)	772
Bst2UI	CCWGG	2 cut(s)	651, 885
Bst4CI	ACNGT	3 cut(s)	872, 946, 958
BstAUI	TGTACA	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	762
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	4 cut(s)	276, 433, 473, 1112
BstF5I	GGATG	2 cut(s)	656, 753
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	3 cut(s)	299, 540, 834
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	3 cut(s)	296, 537, 831
BstMWI	GCNNNNNNNGC	2 cut(s)	968, 1073
BstNI	CCWGG	2 cut(s)	651, 885
BstSCI	CCNGG	2 cut(s)	649, 883
BstSFI	CTRYAG	3 cut(s)	168, 193, 1077
BstSLI	GKGCMC	1 cut(s)	731
BstSNI	TACGTA	1 cut(s)	762
BstV1I	GCAGC	5 cut(s)	216, 333, 974, 1063, 1085
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	3 cut(s)	296, 537, 831
BstYI	RGATCY	3 cut(s)	296, 537, 831
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	4 cut(s)	7, 377, 680, 712
BtrI	CACGTC	1 cut(s)	783
BtsCI	GGATG	2 cut(s)	656, 753
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 729
Cac8I	GCNNGC	1 cut(s)	519
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	653, 906
Csp6I	GTAC	2 cut(s)	313, 777
CviAII	CATG	6 cut(s)	221, 236, 250, 413, 534, 828
CviQI	GTAC	2 cut(s)	313, 777
DdeI	CTNAG	4 cut(s)	276, 433, 473, 1112
DpnI	GATC	3 cut(s)	298, 539, 833
DpnII	GATC	3 cut(s)	296, 537, 831
DrdI	GACNNNNNNGTC	1 cut(s)	904
DseDI	GACNNNNNNGTC	1 cut(s)	904
Eco105I	TACGTA	1 cut(s)	762
Eco130I	CCWWGG	1 cut(s)	772
Eco147I	AGGCCT	2 cut(s)	7, 680
Eco24I	GRGCYC	1 cut(s)	507
Eco47I	GGWCC	2 cut(s)	653, 906
Eco57I	CTGAAG	1 cut(s)	1029
EcoRII	CCWGG	2 cut(s)	649, 883
EcoT14I	CCWWGG	1 cut(s)	772
EcoT22I	ATGCAT	2 cut(s)	414, 535
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	6 cut(s)	224, 239, 253, 416, 537, 831
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	6 cut(s)	220, 235, 249, 412, 533, 827
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	6 cut(s)	230, 347, 710, 963, 1074, 1077
FokI	GGATG	2 cut(s)	643, 740
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	6 cut(s)	230, 347, 710, 963, 1074, 1077
FspBI	CTAG	4 cut(s)	39, 786, 902, 1070
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	6 cut(s)	230, 347, 710, 963, 1074, 1077
GsuI	CTGGAG	1 cut(s)	987
HaeIII	GGCC	4 cut(s)	7, 377, 680, 712
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	6 cut(s)	224, 239, 253, 416, 537, 831
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HindIII	AAGCTT	1 cut(s)	1025
HinfI	GANTC	3 cut(s)	137, 183, 438
HphI	GGTGA	2 cut(s)	977, 1097
Hpy166II	GTNNAC	4 cut(s)	193, 479, 729, 985
Hpy188I	TCNGA	6 cut(s)	22, 277, 474, 931, 1009, 1113
Hpy188III	TCNNGA	4 cut(s)	180, 435, 801, 992
Hpy8I	GTNNAC	4 cut(s)	193, 479, 729, 985
HpyAV	CCTTC	4 cut(s)	151, 670, 760, 930
HpyCH4III	ACNGT	3 cut(s)	872, 946, 958
HpyCH4IV	ACGT	2 cut(s)	761, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	968, 1073
HpyF3I	CTNAG	4 cut(s)	276, 433, 473, 1112
HpySE526I	ACGT	2 cut(s)	761, 782
Hsp92II	CATG	6 cut(s)	224, 239, 253, 416, 537, 831
HspAI	GCGC	1 cut(s)	344
KpnI	GGTACC	1 cut(s)	780
Kzo9I	GATC	3 cut(s)	296, 537, 831
LmnI	GCTCC	2 cut(s)	354, 968
Lsp1109I	GCAGC	5 cut(s)	216, 333, 974, 1063, 1085
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	4 cut(s)	39, 786, 902, 1070
MaeII	ACGT	2 cut(s)	761, 782
MaeIII	GTNAC	2 cut(s)	623, 872
MalI	GATC	3 cut(s)	298, 539, 833
MbiI	CCGCTC	1 cut(s)	911
MboI	GATC	3 cut(s)	296, 537, 831
MboII	GAAGA	6 cut(s)	56, 347, 816, 843, 1022, 1025
MflI	RGATCY	3 cut(s)	296, 537, 831
MhlI	GDGCHC	2 cut(s)	507, 731
MluCI	AATT	8 cut(s)	288, 360, 637, 672, 716, 805, 975, 1107
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	261, 580
Mph1103I	ATGCAT	2 cut(s)	414, 535
MseI	TTAA	4 cut(s)	390, 510, 1092, 1126
MslI	CAYNNNNRTG	3 cut(s)	52, 417, 594
MspA1I	CMGCKG	2 cut(s)	965, 1076
MspR9I	CCNGG	2 cut(s)	651, 885
MvaI	CCWGG	2 cut(s)	651, 885
MwoI	GCNNNNNNNGC	2 cut(s)	968, 1073
NdeII	GATC	3 cut(s)	296, 537, 831
NlaIII	CATG	6 cut(s)	224, 239, 253, 416, 537, 831
NlaIV	GGNNCC	4 cut(s)	264, 778, 833, 907
NmuCI	GTSAC	1 cut(s)	872
NsiI	ATGCAT	2 cut(s)	414, 535
OliI	CACNNNNGTG	2 cut(s)	52, 594
PceI	AGGCCT	2 cut(s)	7, 680
PfeI	GAWTC	2 cut(s)	183, 438
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	6 cut(s)	231, 348, 711, 964, 1075, 1078
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	762
PshBI	ATTAAT	1 cut(s)	1092
Psp6I	CCWGG	2 cut(s)	649, 883
PspGI	CCWGG	2 cut(s)	649, 883
PspN4I	GGNNCC	4 cut(s)	264, 778, 833, 907
PspPI	GGNCC	2 cut(s)	653, 906
PstI	CTGCAG	2 cut(s)	172, 1081
PsuI	RGATCY	3 cut(s)	296, 537, 831
PvuII	CAGCTG	2 cut(s)	965, 1076
RsaI	GTAC	2 cut(s)	314, 778
RsaNI	GTAC	2 cut(s)	313, 777
RseI	CAYNNNNRTG	3 cut(s)	52, 417, 594
SaqAI	TTAA	4 cut(s)	390, 510, 1092, 1126
SatI	GCNGC	6 cut(s)	230, 347, 710, 963, 1074, 1077
Sau3AI	GATC	3 cut(s)	296, 537, 831
Sau96I	GGNCC	2 cut(s)	653, 906
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	651, 885
SduI	GDGCHC	2 cut(s)	507, 731
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	3 cut(s)	168, 193, 1077
SinI	GGWCC	2 cut(s)	653, 906
SmiMI	CAYNNNNRTG	3 cut(s)	52, 417, 594
SmlI	CTYRAG	1 cut(s)	912
SmoI	CTYRAG	1 cut(s)	912
SnaBI	TACGTA	1 cut(s)	762
Sse9I	AATT	8 cut(s)	288, 360, 637, 672, 716, 805, 975, 1107
SseBI	AGGCCT	2 cut(s)	7, 680
SsiI	CCGC	4 cut(s)	83, 304, 709, 909
SspMI	CTAG	4 cut(s)	39, 786, 902, 1070
StuI	AGGCCT	2 cut(s)	7, 680
StyD4I	CCNGG	2 cut(s)	649, 883
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	3 cut(s)	872, 946, 958
TaiI	ACGT	2 cut(s)	764, 785
TaqI	TCGA	1 cut(s)	1104
TasI	AATT	8 cut(s)	288, 360, 637, 672, 716, 805, 975, 1107
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	712
TfiI	GAWTC	2 cut(s)	183, 438
Tru1I	TTAA	4 cut(s)	390, 510, 1092, 1126
Tru9I	TTAA	4 cut(s)	390, 510, 1092, 1126
TscAI	CASTG	2 cut(s)	211, 736
TseFI	GTSAC	1 cut(s)	872
TseI	GCWGC	5 cut(s)	229, 346, 962, 1073, 1076
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	6 cut(s)	162, 209, 224, 567, 742, 816
TspRI	CASTG	2 cut(s)	211, 736
VneI	GTGCAC	1 cut(s)	727
VpaK11BI	GGWCC	2 cut(s)	653, 906
VspI	ATTAAT	1 cut(s)	1092
XapI	RAATTY	4 cut(s)	716, 805, 975, 1107
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	4 cut(s)	39, 786, 902, 1070
Zsp2I	ATGCAT	2 cut(s)	414, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.