Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007744

Physical Location & Seq

Genomic Coordinates Reverse (-)

14807104 .. 14812655

Gene Structure 5552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21260.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAGGCCTAACATCGTTTCCGAGGCAGGACTGCAGACTAGGTTGGGGCAATGGTGGGAGGGCATTCCGTTCCTTACTTCTGCGGTGGTGGGTGTCTGCGCAACTATTTACGTTGTTTGCCTCTTGGCTGGATACGACTCCTTTTATGAAGTATGCTTTTTGCCATCTGCAGTTATCTCAAAGTTCCAAGTCTACAGGATTTTCACCGCCATTCTATTTCATGGTTCACTGCTTCATGTGTTGTTCAACATGATGGCATTGGTTCCTTTGGGTTCTGAGTTGGAGAGAATTATGGGATCTGTTCGCTTGTTGTACATAATCATTCTGTTGGCTACAACCAATGCGCTGCTCCATCTTCTGATAGCACTTTTAGTGGCTTATAATCCCATTCACCCTTTTGAGTATTTGATGCATGAGTGTGCAATAGGCTTCTCAGGAATCTTGTTTTCTATGATTGTAATAGAGACAAGTCTGAGTGGACAGCAATACAGAAGTGTGTTTGGACTCTTTAATGTGCCTGCTAAATGGTATGCATGGATCTTGCTGGTAGTGTTCCAACTTGTAATGTCTAATGTTTCATTACTGGGACACCTGTGTGGTATTCTGTCTGGCTTCGCTTATAGTTACGGCTTGTTCAATTTCCTCATTCCGGGACCATCATTCTATTCCAAAATTGAGGCCTCCTCGTTGCTTTCAACGTGTGTGAGGCGGCCAAAATTTATTTTGTGCACTGGTGGAAATCCCTCTGCCTCTATCCCTACGTATACAAGCCAAGGTACCGCATCTAGTGGATTATTTTCGGGAAATTTGTGGAGAAACTTGTCTTCATGGATCCCACAAAGGGAAGCATCTCCACAGGCAACACAAGACAGTCACGTGTTTCCTGGGAGGGGTAGGACACTGGGGTCTGGTGCAGGACCGCGGTTATCTGATGCAAGGCGAACGATAAATAATACGGTGGCAGCTGGAGCTGAGATTCCTGTTCACCATCAGGACTATGTGGCTTCTGAAGACGAAATACAAAAGCTTGTATCGATGGGTTTTGAAAGGACACAGGTTGAAGTTGCACTTGCAGCTGCAGATGGTGATATTAATGTGGCAGTCGAAATTCTGAGCCAACAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid UBA

Protein Analysis

376

Amino Acids

40.96

Weight (kDa)

6.5

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	1 - 130	2.8e-16	Rhomboid domain
UBA	PF00627	282 - 316	1.9e-09	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58460 AT3G58460
fragaria_vesca	FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260
malus_domestica	MD12G1049100.v1.1 MD14G1048000.v1.1
prunus_persica	Prupe.7G087100_v2.0.a1
pyrus_communis	pycom12g04400 pycom14g03950
rosa_chinensis	RchiOBHm_Chr3g0477721
rosa_laevigata	RLG00000023695
rosa_multiflora	Rmu_sc0006187.1_g000017
rosa_roxburghii	Rroxscaffold_6G00403720
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213200 Rh3BG246900 Rh3CG240700 Rh3DG240000
rosa_wichuraiana	Rw3G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AasI	GACNNNNNNGTC	1 cut(s)	904
Acc16I	TGCGCA	1 cut(s)	100
Acc65I	GGTACC	1 cut(s)	776
AccB1I	GGYRCC	1 cut(s)	776
AccI	GTMKAC	2 cut(s)	192, 764
AccII	CGCG	1 cut(s)	922
AciI	CCGC	6 cut(s)	83, 207, 709, 780, 920, 922
AclWI	GGATC	4 cut(s)	304, 545, 826, 839
AcoI	YGGCCR	1 cut(s)	710
AcsI	RAATTY	3 cut(s)	716, 805, 1107
AcuI	CTGAAG	1 cut(s)	1029
AcvI	CACGTG	1 cut(s)	877
AfaI	GTAC	2 cut(s)	314, 778
AfiI	CCNNNNNNNGG	3 cut(s)	649, 841, 890
AflIII	ACRYGT	2 cut(s)	698, 876
AgsI	TTSAA	5 cut(s)	247, 637, 696, 1046, 1061
AjnI	CCWGG	1 cut(s)	883
AleI	CACNNNNGTG	1 cut(s)	594
AluBI	AGCT	4 cut(s)	965, 971, 1027, 1076
AluI	AGCT	4 cut(s)	965, 971, 1027, 1076
Alw21I	GWGCWC	1 cut(s)	731
Alw26I	GTCTC	1 cut(s)	458
Alw44I	GTGCAC	1 cut(s)	727
AlwI	GGATC	4 cut(s)	304, 545, 826, 839
AoxI	GGCC	3 cut(s)	5, 678, 710
ApaLI	GTGCAC	1 cut(s)	727
ApeKI	GCWGC	4 cut(s)	346, 962, 1073, 1076
ApoI	RAATTY	3 cut(s)	716, 805, 1107
AseI	ATTAAT	1 cut(s)	1092
Asp718I	GGTACC	1 cut(s)	776
AspLEI	GCGC	2 cut(s)	101, 346
AspS9I	GGNCC	2 cut(s)	653, 917
AsuC2I	CCSGG	1 cut(s)	651
AsuHPI	GGTGA	4 cut(s)	196, 383, 977, 1097
AvaII	GGWCC	2 cut(s)	653, 917
BaeGI	GKGCMC	1 cut(s)	731
BamHI	GGATCC	1 cut(s)	831
BanI	GGYRCC	1 cut(s)	776
BarI	GAAGNNNNNNTAC	2 cut(s)	1002, 1034
BbrPI	CACGTG	1 cut(s)	877
BbsI	GAAGAC	2 cut(s)	816, 1017
Bbv12I	GWGCWC	1 cut(s)	731
BbvI	GCAGC	4 cut(s)	333, 974, 1063, 1085
BccI	CCATC	7 cut(s)	172, 247, 360, 664, 996, 1030, 1076
BceAI	ACGGC	1 cut(s)	643
BciT130I	CCWGG	1 cut(s)	885
BciVI	GTATCC	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	651
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	39, 786
BfmI	CTRYAG	4 cut(s)	32, 168, 193, 1077
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	5 cut(s)	347, 710, 963, 1074, 1077
BlsI	GCNGC	5 cut(s)	348, 711, 964, 1075, 1078
Bme1390I	CCNGG	2 cut(s)	651, 885
Bme18I	GGWCC	2 cut(s)	653, 917
BmgT120I	GGNCC	2 cut(s)	653, 917
BmiI	GGNNCC	4 cut(s)	264, 654, 778, 833
BmrFI	CCNGG	2 cut(s)	651, 885
BmrI	ACTGGG	2 cut(s)	593, 911
BmsI	GCATC	4 cut(s)	399, 791, 857, 922
BmuI	ACTGGG	2 cut(s)	593, 911
BpiI	GAAGAC	2 cut(s)	816, 1017
BplI	GAGNNNNNCTC	2 cut(s)	668, 700
BpmI	CTGGAG	1 cut(s)	987
BpuMI	CCSGG	1 cut(s)	651
Bsa29I	ATCGAT	1 cut(s)	1034
BsaAI	YACGTR	2 cut(s)	762, 877
BsaJI	CCNNGG	4 cut(s)	21, 772, 884, 920
Bsc4I	CCNNNNNNNGG	3 cut(s)	649, 841, 890
Bse1I	ACTGG	3 cut(s)	588, 736, 906
Bse3DI	GCAATG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	885
BseCI	ATCGAT	1 cut(s)	1034
BseDI	CCNNGG	4 cut(s)	21, 772, 884, 920
BseLI	CCNNNNNNNGG	3 cut(s)	649, 841, 890
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	5 cut(s)	267, 447, 464, 963, 1103
BseNI	ACTGG	3 cut(s)	588, 736, 906
BseRI	GAGGAG	1 cut(s)	673
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	4 cut(s)	333, 974, 1063, 1085
BsgI	GTGCAG	1 cut(s)	933
Bsh1236I	CGCG	1 cut(s)	922
BshFI	GGCC	3 cut(s)	7, 680, 712
BshNI	GGYRCC	1 cut(s)	776
BshVI	ATCGAT	1 cut(s)	1034
BsiHKAI	GWGCWC	1 cut(s)	731
BsiSI	CCGG	1 cut(s)	650
BslFI	GGGAC	2 cut(s)	600, 666
BslI	CCNNNNNNNGG	3 cut(s)	649, 841, 890
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	600, 666
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	7, 680, 712
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	296, 537, 831
BspACI	CCGC	6 cut(s)	83, 207, 709, 780, 920, 922
BspANI	GGCC	3 cut(s)	7, 680, 712
BspCNI	CTCAG	5 cut(s)	268, 446, 465, 964, 1104
BspDI	ATCGAT	1 cut(s)	1034
BspFNI	CGCG	1 cut(s)	922
BspLI	GGNNCC	4 cut(s)	264, 654, 778, 833
BspMAI	CTGCAG	3 cut(s)	36, 172, 1081
BspPI	GGATC	4 cut(s)	304, 545, 826, 839
BspT107I	GGYRCC	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	56
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	3 cut(s)	588, 736, 906
BssECI	CCNNGG	4 cut(s)	21, 772, 884, 920
BssMI	GATC	3 cut(s)	296, 537, 831
BssNAI	GTATAC	1 cut(s)	765
BssT1I	CCWWGG	1 cut(s)	772
Bst1107I	GTATAC	1 cut(s)	765
Bst2UI	CCWGG	1 cut(s)	885
Bst4CI	ACNGT	2 cut(s)	872, 958
BstAUI	TGTACA	1 cut(s)	312
BstBAI	YACGTR	2 cut(s)	762, 877
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	5 cut(s)	276, 433, 473, 972, 1112
BstDSI	CCRYGG	1 cut(s)	920
BstFNI	CGCG	1 cut(s)	922
BstHHI	GCGC	2 cut(s)	101, 346
BstKTI	GATC	3 cut(s)	299, 540, 834
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	3 cut(s)	296, 537, 831
BstMWI	GCNNNNNNNGC	2 cut(s)	968, 1073
BstNI	CCWGG	1 cut(s)	885
BstSCI	CCNGG	2 cut(s)	649, 883
BstSFI	CTRYAG	4 cut(s)	32, 168, 193, 1077
BstSLI	GKGCMC	1 cut(s)	731
BstSNI	TACGTA	1 cut(s)	762
BstUI	CGCG	1 cut(s)	922
BstV1I	GCAGC	4 cut(s)	333, 974, 1063, 1085
BstV2I	GAAGAC	2 cut(s)	816, 1017
BstX2I	RGATCY	3 cut(s)	296, 537, 831
BstYI	RGATCY	3 cut(s)	296, 537, 831
BstZ17I	GTATAC	1 cut(s)	765
Bsu15I	ATCGAT	1 cut(s)	1034
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	3 cut(s)	7, 680, 712
BsuTUI	ATCGAT	1 cut(s)	1034
BtgI	CCRYGG	1 cut(s)	920
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	3 cut(s)	227, 729, 899
Cac8I	GCNNGC	1 cut(s)	519
CfoI	GCGC	2 cut(s)	101, 346
Cfr13I	GGNCC	2 cut(s)	653, 917
Cfr42I	CCGCGG	1 cut(s)	923
ClaI	ATCGAT	1 cut(s)	1034
Csp6I	GTAC	2 cut(s)	313, 777
CviAII	CATG	6 cut(s)	221, 236, 250, 413, 534, 828
CviQI	GTAC	2 cut(s)	313, 777
DdeI	CTNAG	5 cut(s)	276, 433, 473, 972, 1112
DpnI	GATC	3 cut(s)	298, 539, 833
DpnII	GATC	3 cut(s)	296, 537, 831
DrdI	GACNNNNNNGTC	1 cut(s)	904
DseDI	GACNNNNNNGTC	1 cut(s)	904
EaeI	YGGCCR	1 cut(s)	710
Eco105I	TACGTA	1 cut(s)	762
Eco130I	CCWWGG	1 cut(s)	772
Eco147I	AGGCCT	2 cut(s)	7, 680
Eco47I	GGWCC	2 cut(s)	653, 917
Eco57I	CTGAAG	1 cut(s)	1029
Eco72I	CACGTG	1 cut(s)	877
EcoRII	CCWGG	1 cut(s)	883
EcoT14I	CCWWGG	1 cut(s)	772
EcoT22I	ATGCAT	2 cut(s)	414, 535
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	6 cut(s)	224, 239, 253, 416, 537, 831
FalI	AAGNNNNNCTT	2 cut(s)	1053, 1085
FaqI	GGGAC	2 cut(s)	600, 666
FatI	CATG	6 cut(s)	220, 235, 249, 412, 533, 827
FblI	GTMKAC	2 cut(s)	192, 764
Fnu4HI	GCNGC	5 cut(s)	347, 710, 963, 1074, 1077
Fsp4HI	GCNGC	5 cut(s)	347, 710, 963, 1074, 1077
FspBI	CTAG	2 cut(s)	39, 786
FspI	TGCGCA	1 cut(s)	100
GlaI	GCGC	2 cut(s)	100, 345
GluI	GCNGC	5 cut(s)	347, 710, 963, 1074, 1077
GsuI	CTGGAG	1 cut(s)	987
HaeIII	GGCC	3 cut(s)	7, 680, 712
HapII	CCGG	1 cut(s)	650
HhaI	GCGC	2 cut(s)	101, 346
Hin1II	CATG	6 cut(s)	224, 239, 253, 416, 537, 831
Hin6I	GCGC	2 cut(s)	99, 344
HinP1I	GCGC	2 cut(s)	99, 344
HindIII	AAGCTT	1 cut(s)	1025
HinfI	GANTC	4 cut(s)	137, 438, 504, 976
HpaII	CCGG	1 cut(s)	650
HphI	GGTGA	4 cut(s)	196, 383, 977, 1097
Hpy166II	GTNNAC	6 cut(s)	193, 227, 479, 729, 765, 985
Hpy188I	TCNGA	7 cut(s)	22, 277, 360, 474, 931, 1009, 1113
Hpy188III	TCNNGA	3 cut(s)	435, 801, 992
Hpy8I	GTNNAC	6 cut(s)	193, 227, 479, 729, 765, 985
HpyCH4III	ACNGT	2 cut(s)	872, 958
HpyCH4IV	ACGT	4 cut(s)	111, 698, 761, 876
HpyF10VI	GCNNNNNNNGC	2 cut(s)	968, 1073
HpyF3I	CTNAG	5 cut(s)	276, 433, 473, 972, 1112
HpySE526I	ACGT	4 cut(s)	111, 698, 761, 876
Hsp92II	CATG	6 cut(s)	224, 239, 253, 416, 537, 831
HspAI	GCGC	2 cut(s)	99, 344
KpnI	GGTACC	1 cut(s)	780
KspI	CCGCGG	1 cut(s)	923
Kzo9I	GATC	3 cut(s)	296, 537, 831
LmnI	GCTCC	2 cut(s)	354, 968
Lsp1109I	GCAGC	4 cut(s)	333, 974, 1063, 1085
LweI	GCATC	4 cut(s)	399, 791, 857, 922
MaeI	CTAG	2 cut(s)	39, 786
MaeII	ACGT	4 cut(s)	111, 698, 761, 876
MaeIII	GTNAC	2 cut(s)	623, 872
MalI	GATC	3 cut(s)	298, 539, 833
MboI	GATC	3 cut(s)	296, 537, 831
MboII	GAAGA	3 cut(s)	347, 816, 1022
MflI	RGATCY	3 cut(s)	296, 537, 831
MhlI	GDGCHC	1 cut(s)	731
MluCI	AATT	6 cut(s)	288, 637, 672, 716, 805, 1107
MlyI	GAGTC	2 cut(s)	131, 498
MmeI	TCCRAC	2 cut(s)	261, 580
Mph1103I	ATGCAT	2 cut(s)	414, 535
MseI	TTAA	3 cut(s)	510, 1092, 1126
MslI	CAYNNNNRTG	2 cut(s)	417, 594
MspA1I	CMGCKG	3 cut(s)	922, 965, 1076
MspI	CCGG	1 cut(s)	650
MspR9I	CCNGG	2 cut(s)	651, 885
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	885
MvnI	CGCG	1 cut(s)	922
MwoI	GCNNNNNNNGC	2 cut(s)	968, 1073
NciI	CCSGG	1 cut(s)	651
NdeII	GATC	3 cut(s)	296, 537, 831
NlaIII	CATG	6 cut(s)	224, 239, 253, 416, 537, 831
NlaIV	GGNNCC	4 cut(s)	264, 654, 778, 833
NmuCI	GTSAC	1 cut(s)	872
NsbI	TGCGCA	1 cut(s)	100
NsiI	ATGCAT	2 cut(s)	414, 535
OliI	CACNNNNGTG	1 cut(s)	594
PceI	AGGCCT	2 cut(s)	7, 680
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	438, 976
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	5 cut(s)	348, 711, 964, 1075, 1078
PleI	GAGTC	2 cut(s)	131, 498
PmaCI	CACGTG	1 cut(s)	877
PmlI	CACGTG	1 cut(s)	877
PpsI	GAGTC	2 cut(s)	131, 498
Ppu21I	YACGTR	2 cut(s)	762, 877
PshBI	ATTAAT	1 cut(s)	1092
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	883
PspCI	CACGTG	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	883
PspN4I	GGNNCC	4 cut(s)	264, 654, 778, 833
PspPI	GGNCC	2 cut(s)	653, 917
PstI	CTGCAG	3 cut(s)	36, 172, 1081
PsuI	RGATCY	3 cut(s)	296, 537, 831
PvuII	CAGCTG	2 cut(s)	965, 1076
RsaI	GTAC	2 cut(s)	314, 778
RsaNI	GTAC	2 cut(s)	313, 777
RseI	CAYNNNNRTG	2 cut(s)	417, 594
SacII	CCGCGG	1 cut(s)	923
SaqAI	TTAA	3 cut(s)	510, 1092, 1126
SatI	GCNGC	5 cut(s)	347, 710, 963, 1074, 1077
Sau3AI	GATC	3 cut(s)	296, 537, 831
Sau96I	GGNCC	2 cut(s)	653, 917
SchI	GAGTC	2 cut(s)	131, 498
ScrFI	CCNGG	2 cut(s)	651, 885
SduI	GDGCHC	1 cut(s)	731
SfaNI	GCATC	4 cut(s)	399, 791, 857, 922
SfcI	CTRYAG	4 cut(s)	32, 168, 193, 1077
Sfr303I	CCGCGG	1 cut(s)	923
SgrBI	CCGCGG	1 cut(s)	923
SinI	GGWCC	2 cut(s)	653, 917
SmiMI	CAYNNNNRTG	2 cut(s)	417, 594
SnaBI	TACGTA	1 cut(s)	762
Sse9I	AATT	6 cut(s)	288, 637, 672, 716, 805, 1107
SseBI	AGGCCT	2 cut(s)	7, 680
SsiI	CCGC	6 cut(s)	83, 207, 709, 780, 920, 922
SspMI	CTAG	2 cut(s)	39, 786
StuI	AGGCCT	2 cut(s)	7, 680
StyD4I	CCNGG	2 cut(s)	649, 883
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	2 cut(s)	872, 958
TaiI	ACGT	4 cut(s)	114, 701, 764, 879
TaqI	TCGA	2 cut(s)	1034, 1104
TasI	AATT	6 cut(s)	288, 637, 672, 716, 805, 1107
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	712
TfiI	GAWTC	2 cut(s)	438, 976
Tru1I	TTAA	3 cut(s)	510, 1092, 1126
Tru9I	TTAA	3 cut(s)	510, 1092, 1126
TscAI	CASTG	3 cut(s)	234, 736, 906
TseFI	GTSAC	1 cut(s)	872
TseI	GCWGC	4 cut(s)	346, 962, 1073, 1076
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	5 cut(s)	162, 209, 224, 567, 816
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	3 cut(s)	234, 736, 906
VneI	GTGCAC	1 cut(s)	727
VpaK11BI	GGWCC	2 cut(s)	653, 917
VspI	ATTAAT	1 cut(s)	1092
XapI	RAATTY	3 cut(s)	716, 805, 1107
XmiI	GTMKAC	2 cut(s)	192, 764
XspI	CTAG	2 cut(s)	39, 786
Zsp2I	ATGCAT	2 cut(s)	414, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.