Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007744

Physical Location & Seq

Genomic Coordinates Reverse (-)

4249366 .. 4252102

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGATGAATGTGCAATAGGCTTCTCGGGAATCTTGTTCTCTATGATTGTTATAGAGACAAGTCTGAGTGGACACCAGTCTAGAAGTGTGTTTGGACTCTTCAATGTACCTGCTAAATGGTATGCATGGATCTTGCTGGTAGTGTTCCAAGTTGTTATGCCAAATGTTTCTTTACTGGGACACCTATGTGGCATTTTGTCTGGCTTTGCTTATACTTACAGCTTATTAAATTTCCTCATTCCGGGGACATCCTTTTATTCTAAAATTGAGGCCTCCTCATTGTTTTCAAGTTGTGTGAGGCGGCCTAAATTTATTGTGTGCACTGGTGGGAATCCTTCTGCCTTCATCCCTACATATTCAACCCAAGGTACACCCACTAGTGGATTCTCTGCTGGAAGTATCTGGAGAAACTTGTCTTCATGGATCCCACAGAGGGAAACATCTGTACAGTCAGCACAAGATGGTCACATGTTTCCTGGGAGAGGAAGAACACTTGGATCTGGTCGAGGTACCATTTCTGATGCTGATTCGGAATCAAACTTACAGGCTAGACTCTTGGACAATAGTAACTCAGAACATCCATCAGATGTGGCAGTTATTGGTACAGGACAGAATTTATCTGATGGAAGGCAGGCAACGCTAAATAATGCAGCGGCAGAAATTCCTGTACACCATCAGGATTATGTTGCATCTGAAGAAGAAATCCAAAAGCTTGTATCAATGGGTTTTGAGAGGACACAGGTAGAAGTTGCCCTAGCAGCTGCAGATGGGGATCTTAATGTGGCAGTGGAGATTCTGAGCCAACAGGTCTGTCTTTCGAACTCGTTGATTTCCCACGGGTGGCTAAATGCAAGCAAGCAAGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid UBA

Protein Analysis

290

Amino Acids

31.06

Weight (kDa)

5.44

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	4 - 76	2.6e-10	Rhomboid domain
UBA	PF00627	232 - 266	8.8e-10	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58460 AT3G58460
fragaria_vesca	FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260
malus_domestica	MD12G1049100.v1.1 MD14G1048000.v1.1
prunus_persica	Prupe.7G087100_v2.0.a1
pyrus_communis	pycom12g04400 pycom14g03950
rosa_chinensis	RchiOBHm_Chr3g0477721
rosa_laevigata	RLG00000023695
rosa_multiflora	Rmu_sc0006187.1_g000017
rosa_roxburghii	Rroxscaffold_6G00403720
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213200 Rh3BG246900 Rh3CG240700 Rh3DG240000
rosa_wichuraiana	Rw3G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	2 cut(s)	301, 653
AclWI	GGATC	5 cut(s)	137, 418, 431, 505, 780
AcsI	RAATTY	4 cut(s)	229, 308, 613, 660
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	6 cut(s)	108, 370, 447, 511, 604, 669
AfiI	CCNNNNNNNGG	5 cut(s)	241, 380, 433, 482, 840
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	3 cut(s)	103, 288, 360
AhlI	ACTAGT	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	475
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	222, 712, 761
AluI	AGCT	3 cut(s)	222, 712, 761
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	50
Alw44I	GTGCAC	1 cut(s)	319
AlwI	GGATC	5 cut(s)	137, 418, 431, 505, 780
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	270, 302
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	650, 758, 761
ApoI	RAATTY	4 cut(s)	229, 308, 613, 660
Asp718I	GGTACC	1 cut(s)	509
AsuC2I	CCSGG	1 cut(s)	243
AsuII	TTCGAA	1 cut(s)	818
AvaI	CYCGRG	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	3 cut(s)	662, 748, 770
BccI	CCATC	5 cut(s)	455, 589, 617, 681, 761
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	50
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	4 cut(s)	81, 378, 549, 755
BfmI	CTRYAG	1 cut(s)	762
BfuAI	ACCTGC	1 cut(s)	118
BisI	GCNGC	5 cut(s)	302, 651, 654, 759, 762
BlsI	GCNGC	5 cut(s)	303, 652, 655, 760, 763
Bme1390I	CCNGG	2 cut(s)	243, 477
BmeT110I	CYCGRG	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	425, 511
BmrFI	CCNGG	2 cut(s)	243, 477
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	2 cut(s)	511, 698
BmuI	ACTGGG	1 cut(s)	185
BoxI	GACNNNNGTC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	408
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	424
Bpu14I	TTCGAA	1 cut(s)	818
BpuMI	CCSGG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	771
BsaJI	CCNNGG	4 cut(s)	242, 364, 476, 835
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 380, 433, 482, 840
Bse1I	ACTGG	3 cut(s)	76, 180, 328
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	4 cut(s)	242, 364, 476, 835
BseGI	GGATG	4 cut(s)	10, 248, 345, 577
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	5 cut(s)	241, 380, 433, 482, 840
BseMII	CTCAG	3 cut(s)	56, 585, 788
BseNI	ACTGG	3 cut(s)	76, 180, 328
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	3 cut(s)	662, 748, 770
BshFI	GGCC	2 cut(s)	272, 304
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	192, 259
BslI	CCNNNNNNNGG	5 cut(s)	241, 380, 433, 482, 840
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	192, 259
BsnI	GGCC	2 cut(s)	272, 304
BsoBI	CYCGRG	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	818
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp1407I	TGTACA	2 cut(s)	445, 667
Bsp143I	GATC	4 cut(s)	129, 423, 497, 772
BspACI	CCGC	2 cut(s)	301, 653
BspANI	GGCC	2 cut(s)	272, 304
BspCNI	CTCAG	3 cut(s)	57, 584, 789
BspLI	GGNNCC	2 cut(s)	425, 511
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	5 cut(s)	137, 418, 431, 505, 780
BspT104I	TTCGAA	1 cut(s)	818
BspT107I	GGYRCC	1 cut(s)	509
BsrGI	TGTACA	2 cut(s)	445, 667
BsrI	ACTGG	3 cut(s)	76, 180, 328
BssECI	CCNNGG	4 cut(s)	242, 364, 476, 835
BssMI	GATC	4 cut(s)	129, 423, 497, 772
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	1 cut(s)	104
BstAUI	TGTACA	2 cut(s)	445, 667
BstBI	TTCGAA	1 cut(s)	818
BstC8I	GCNNGC	4 cut(s)	633, 853, 857, 861
BstDEI	CTNAG	3 cut(s)	65, 571, 797
BstDSI	CCRYGG	1 cut(s)	835
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	4 cut(s)	10, 248, 345, 577
BstKTI	GATC	4 cut(s)	132, 426, 500, 775
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	4 cut(s)	129, 423, 497, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	637, 758
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	1 cut(s)	472
BstPAI	GACNNNNGTC	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	241, 475
BstSFI	CTRYAG	1 cut(s)	762
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	3 cut(s)	662, 748, 770
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	4 cut(s)	129, 423, 497, 772
BstYI	RGATCY	4 cut(s)	129, 423, 497, 772
BsuRI	GGCC	2 cut(s)	272, 304
BtgI	CCRYGG	1 cut(s)	835
BtsCI	GGATG	4 cut(s)	10, 248, 345, 577
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	2 cut(s)	321, 792
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	4 cut(s)	633, 853, 857, 861
Csp6I	GTAC	6 cut(s)	107, 369, 446, 510, 603, 668
CviAII	CATG	3 cut(s)	126, 420, 469
CviQI	GTAC	6 cut(s)	107, 369, 446, 510, 603, 668
DdeI	CTNAG	3 cut(s)	65, 571, 797
DpnI	GATC	4 cut(s)	131, 425, 499, 774
DpnII	GATC	4 cut(s)	129, 423, 497, 772
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	364
Eco147I	AGGCCT	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	25
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	3 cut(s)	129, 423, 472
FaqI	GGGAC	2 cut(s)	192, 259
FatI	CATG	3 cut(s)	125, 419, 468
Fnu4HI	GCNGC	5 cut(s)	302, 651, 654, 759, 762
FokI	GGATG	4 cut(s)	17, 235, 332, 564
Fsp4HI	GCNGC	5 cut(s)	302, 651, 654, 759, 762
FspBI	CTAG	4 cut(s)	81, 378, 549, 755
GluI	GCNGC	5 cut(s)	302, 651, 654, 759, 762
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	272, 304
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	3 cut(s)	129, 423, 472
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	8 cut(s)	30, 96, 331, 384, 527, 533, 552, 793
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	4 cut(s)	71, 321, 371, 670
Hpy188I	TCNGA	8 cut(s)	66, 520, 532, 574, 586, 622, 694, 798
Hpy188III	TCNNGA	4 cut(s)	27, 81, 403, 677
Hpy8I	GTNNAC	4 cut(s)	71, 321, 371, 670
HpyAV	CCTTC	3 cut(s)	345, 352, 621
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4V	TGCA	7 cut(s)	14, 125, 321, 650, 689, 764, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	637, 758
HpyF3I	CTNAG	3 cut(s)	65, 571, 797
Hsp92II	CATG	3 cut(s)	129, 423, 472
KpnI	GGTACC	1 cut(s)	513
Kzo9I	GATC	4 cut(s)	129, 423, 497, 772
Lsp1109I	GCAGC	3 cut(s)	662, 748, 770
LweI	GCATC	2 cut(s)	511, 698
MaeI	CTAG	4 cut(s)	81, 378, 549, 755
MaeIII	GTNAC	2 cut(s)	464, 566
MalI	GATC	4 cut(s)	131, 425, 499, 774
MboI	GATC	4 cut(s)	129, 423, 497, 772
MboII	GAAGA	5 cut(s)	91, 408, 498, 707, 710
MflI	RGATCY	4 cut(s)	129, 423, 497, 772
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	5 cut(s)	229, 264, 308, 613, 660
MlyI	GAGTC	2 cut(s)	90, 546
MnlI	CCTC	9 cut(s)	245, 262, 283, 286, 291, 426, 476, 500, 726
Mph1103I	ATGCAT	1 cut(s)	127
MseI	TTAA	2 cut(s)	227, 777
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	2 cut(s)	653, 761
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	243, 477
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	637, 758
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	4 cut(s)	129, 423, 497, 772
NlaIII	CATG	3 cut(s)	129, 423, 472
NlaIV	GGNNCC	2 cut(s)	425, 511
NmuCI	GTSAC	1 cut(s)	464
NsiI	ATGCAT	1 cut(s)	127
NspI	RCATGY	1 cut(s)	472
NspV	TTCGAA	1 cut(s)	818
OliI	CACNNNNGTG	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	272
PciI	ACATGT	1 cut(s)	468
PfeI	GAWTC	6 cut(s)	30, 331, 384, 527, 533, 793
PkrI	GCNGC	5 cut(s)	303, 652, 655, 760, 763
PleI	GAGTC	2 cut(s)	90, 546
PpsI	GAGTC	2 cut(s)	90, 546
PscI	ACATGT	1 cut(s)	468
PshAI	GACNNNNGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	425, 511
PstI	CTGCAG	1 cut(s)	766
PsuI	RGATCY	4 cut(s)	129, 423, 497, 772
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	6 cut(s)	108, 370, 447, 511, 604, 669
RsaNI	GTAC	6 cut(s)	107, 369, 446, 510, 603, 668
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	227, 777
SatI	GCNGC	5 cut(s)	302, 651, 654, 759, 762
Sau3AI	GATC	4 cut(s)	129, 423, 497, 772
SchI	GAGTC	2 cut(s)	90, 546
ScrFI	CCNGG	2 cut(s)	243, 477
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	9 cut(s)	112, 186, 224, 370, 511, 714, 744, 763, 810
SfaNI	GCATC	2 cut(s)	511, 698
SfcI	CTRYAG	1 cut(s)	762
SfuI	TTCGAA	1 cut(s)	818
SmiMI	CAYNNNNRTG	1 cut(s)	186
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	5 cut(s)	229, 264, 308, 613, 660
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	2 cut(s)	301, 653
SspMI	CTAG	4 cut(s)	81, 378, 549, 755
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	241, 475
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	450
TaqI	TCGA	2 cut(s)	505, 818
TasI	AATT	5 cut(s)	229, 264, 308, 613, 660
TatI	WGTACW	2 cut(s)	445, 667
TauI	GCSGC	2 cut(s)	304, 656
TfiI	GAWTC	6 cut(s)	30, 331, 384, 527, 533, 793
Tru1I	TTAA	2 cut(s)	227, 777
Tru9I	TTAA	2 cut(s)	227, 777
TscAI	CASTG	2 cut(s)	328, 792
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	3 cut(s)	650, 758, 761
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	3 cut(s)	21, 334, 408
TspRI	CASTG	2 cut(s)	328, 792
VneI	GTGCAC	1 cut(s)	319
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	4 cut(s)	229, 308, 613, 660
XbaI	TCTAGA	1 cut(s)	80
XceI	RCATGY	1 cut(s)	472
XspI	CTAG	4 cut(s)	81, 378, 549, 755
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.