Rh3CG240700

Der1-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007744
Physical Location & Seq
Reverse (-)
23072822 .. 23078876
6055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG240700.1

Sequence Viewer

Length: 873 bp
ATGAGGCCTAACATCGTTTCCGAGGCAGGAGTGCAGACTAGGTTGGCACAATGGTGGGAGGGTCTTCCTTTCCTTACTTCTGCGGTGGTTGTTGTTTGCACAACTATTTACTTGGTTTGCCTCTTGGCTGGATACGACTCCTTCTATGAAATATGCTTTTTGCCGTCTGCAGTTATCTCACGATTCCAAGTCTACAGGATTTTCACTGCCATTCTGTTTCATGGTTCGCTGCTTCATGTGTTGTTCAACATGATGGCTTTGGTTCCTTTGGGTTCTGAGTTGGAGAGAATTATGGGATCTGTCCGCTTGTTGTACATAATCATTCTGTTGGCTACAACCAATGCGCTGCTCCATCTTCTAATTGCACTTTTGGTGGCCTATAATCCTATTAAGCCTTTTGAGTATTTGATGCATGAGTGTGCAATAGGCTTCTCAGGAATCTTGTTTTCTATGATTGTAATAGAGACAAGTCTGAGTGGACAGCAATACAGAAGTGTGTTTGGGCTCTTTAATGTGCCTGCTAAATGGTATGCATGGATCTTACTGGTAGTGTTCCAACTTGTTATGTCTAATGTTTCATTACTGGGACACCTGTGTGGTATTCTGTCTGGCTTCGCATATAGTTACGGCTTGTTCAATTTCCTCATTCCTGGACCATCCTTCTATTCCAAAATTGAGGCCTCCTCGTTGCTTTCAACTTGTGTGAGGCGGCCTAAATTTATTTTGTGCACTGGTGGAAATCCCTCTGCCTTCATCCCTACGTATTCAAGCCAAGGTACCACGTCTAGTGGATTGTTTTCGGGAAATTTGTGGAGAAACTTATCTTCATGGATCCCACAGAGGGAAACATCTTCACAGGTATTGTTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid UBA

Protein Analysis

290

Amino Acids

32.29

Weight (kDa)

8.68

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 22 - 209 7.3e-08 Der1-like family
Rhomboid PF01694 62 - 213 4.1e-27 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 871
Acc65I GGTACC 1 cut(s) 776
AccB1I GGYRCC 1 cut(s) 776
AccI GTMKAC 1 cut(s) 192
AciI CCGC 3 cut(s) 83, 304, 709
AclWI GGATC 4 cut(s) 304, 545, 826, 839
AcsI RAATTY 2 cut(s) 716, 805
AfaI GTAC 2 cut(s) 314, 778
AfiI CCNNNNNNNGG 1 cut(s) 841
AgsI TTSAA 4 cut(s) 247, 637, 696, 768
AjiI CACGTC 1 cut(s) 783
AjnI CCWGG 1 cut(s) 649
AleI CACNNNNGTG 2 cut(s) 52, 594
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 1 cut(s) 458
Alw44I GTGCAC 1 cut(s) 727
AlwI GGATC 4 cut(s) 304, 545, 826, 839
AoxI GGCC 4 cut(s) 5, 375, 678, 710
ApaLI GTGCAC 1 cut(s) 727
ApeKI GCWGC 2 cut(s) 229, 346
ApoI RAATTY 2 cut(s) 716, 805
Asp718I GGTACC 1 cut(s) 776
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 653
AvaII GGWCC 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 731
BamHI GGATCC 1 cut(s) 831
BanI GGYRCC 1 cut(s) 776
BanII GRGCYC 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 731
BbvI GCAGC 2 cut(s) 216, 333
BccI CCATC 3 cut(s) 247, 360, 664
BceAI ACGGC 2 cut(s) 148, 643
BciT130I CCWGG 1 cut(s) 651
BciVI GTATCC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 2 cut(s) 39, 786
BfmI CTRYAG 2 cut(s) 168, 193
BfuI GTATCC 1 cut(s) 125
BisI GCNGC 3 cut(s) 230, 347, 710
BlsI GCNGC 3 cut(s) 231, 348, 711
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 653
BmgBI CACGTC 1 cut(s) 783
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 3 cut(s) 264, 778, 833
BmrFI CCNGG 1 cut(s) 651
BmrI ACTGGG 1 cut(s) 593
BmsI GCATC 1 cut(s) 399
BmuI ACTGGG 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 56
BplI GAGNNNNNCTC 2 cut(s) 668, 700
BsaAI YACGTR 1 cut(s) 762
BsaJI CCNNGG 2 cut(s) 21, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 841
Bse1I ACTGG 3 cut(s) 549, 588, 736
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 2 cut(s) 21, 772
BseGI GGATG 2 cut(s) 656, 753
BseLI CCNNNNNNNGG 1 cut(s) 841
BseMII CTCAG 3 cut(s) 267, 447, 464
BseNI ACTGG 3 cut(s) 549, 588, 736
BseRI GAGGAG 1 cut(s) 673
BseSI GKGCMC 1 cut(s) 731
BseXI GCAGC 2 cut(s) 216, 333
BsgI GTGCAG 1 cut(s) 53
BshFI GGCC 4 cut(s) 7, 377, 680, 712
BshNI GGYRCC 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 731
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 1 cut(s) 841
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 600
BsnI GGCC 4 cut(s) 7, 377, 680, 712
Bsp1286I GDGCHC 2 cut(s) 507, 731
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 3 cut(s) 296, 537, 831
BspACI CCGC 3 cut(s) 83, 304, 709
BspANI GGCC 4 cut(s) 7, 377, 680, 712
BspCNI CTCAG 3 cut(s) 268, 446, 465
BspLI GGNNCC 3 cut(s) 264, 778, 833
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 4 cut(s) 304, 545, 826, 839
BspT107I GGYRCC 1 cut(s) 776
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 3 cut(s) 549, 588, 736
BssECI CCNNGG 2 cut(s) 21, 772
BssMI GATC 3 cut(s) 296, 537, 831
BssT1I CCWWGG 1 cut(s) 772
Bst2UI CCWGG 1 cut(s) 651
BstAUI TGTACA 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 762
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 3 cut(s) 276, 433, 473
BstF5I GGATG 2 cut(s) 656, 753
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 3 cut(s) 299, 540, 834
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 3 cut(s) 296, 537, 831
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 649
BstSFI CTRYAG 2 cut(s) 168, 193
BstSLI GKGCMC 1 cut(s) 731
BstSNI TACGTA 1 cut(s) 762
BstV1I GCAGC 2 cut(s) 216, 333
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 3 cut(s) 296, 537, 831
BstYI RGATCY 3 cut(s) 296, 537, 831
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 4 cut(s) 7, 377, 680, 712
BtrI CACGTC 1 cut(s) 783
BtsCI GGATG 2 cut(s) 656, 753
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 204, 729
Cac8I GCNNGC 1 cut(s) 519
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 653
Csp6I GTAC 2 cut(s) 313, 777
CviAII CATG 6 cut(s) 221, 236, 250, 413, 534, 828
CviQI GTAC 2 cut(s) 313, 777
DdeI CTNAG 3 cut(s) 276, 433, 473
DpnI GATC 3 cut(s) 298, 539, 833
DpnII GATC 3 cut(s) 296, 537, 831
Eco105I TACGTA 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 772
Eco147I AGGCCT 2 cut(s) 7, 680
Eco24I GRGCYC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 772
EcoT22I ATGCAT 2 cut(s) 414, 535
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 772
FaeI CATG 6 cut(s) 224, 239, 253, 416, 537, 831
FaqI GGGAC 1 cut(s) 600
FatI CATG 6 cut(s) 220, 235, 249, 412, 533, 827
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 230, 347, 710
FokI GGATG 2 cut(s) 643, 740
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 3 cut(s) 230, 347, 710
FspBI CTAG 2 cut(s) 39, 786
GlaI GCGC 1 cut(s) 345
GluI GCNGC 3 cut(s) 230, 347, 710
HaeIII GGCC 4 cut(s) 7, 377, 680, 712
HhaI GCGC 1 cut(s) 346
Hin1II CATG 6 cut(s) 224, 239, 253, 416, 537, 831
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 3 cut(s) 137, 183, 438
Hpy166II GTNNAC 3 cut(s) 193, 479, 729
Hpy188I TCNGA 3 cut(s) 22, 277, 474
Hpy188III TCNNGA 3 cut(s) 180, 435, 801
Hpy8I GTNNAC 3 cut(s) 193, 479, 729
HpyAV CCTTC 3 cut(s) 151, 670, 760
HpyCH4IV ACGT 2 cut(s) 761, 782
HpyCH4V TGCA 8 cut(s) 34, 99, 170, 365, 412, 422, 533, 729
HpyF3I CTNAG 3 cut(s) 276, 433, 473
HpySE526I ACGT 2 cut(s) 761, 782
Hsp92II CATG 6 cut(s) 224, 239, 253, 416, 537, 831
HspAI GCGC 1 cut(s) 344
KpnI GGTACC 1 cut(s) 780
Kzo9I GATC 3 cut(s) 296, 537, 831
LmnI GCTCC 1 cut(s) 354
Lsp1109I GCAGC 2 cut(s) 216, 333
LweI GCATC 1 cut(s) 399
MaeI CTAG 2 cut(s) 39, 786
MaeII ACGT 2 cut(s) 761, 782
MaeIII GTNAC 1 cut(s) 623
MalI GATC 3 cut(s) 298, 539, 833
MboI GATC 3 cut(s) 296, 537, 831
MboII GAAGA 4 cut(s) 56, 347, 816, 843
MflI RGATCY 3 cut(s) 296, 537, 831
MhlI GDGCHC 2 cut(s) 507, 731
MluCI AATT 6 cut(s) 288, 360, 637, 672, 716, 805
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 261, 580
Mph1103I ATGCAT 2 cut(s) 414, 535
MseI TTAA 2 cut(s) 390, 510
MslI CAYNNNNRTG 3 cut(s) 52, 417, 594
MspR9I CCNGG 1 cut(s) 651
MvaI CCWGG 1 cut(s) 651
NdeII GATC 3 cut(s) 296, 537, 831
NlaIII CATG 6 cut(s) 224, 239, 253, 416, 537, 831
NlaIV GGNNCC 3 cut(s) 264, 778, 833
NsiI ATGCAT 2 cut(s) 414, 535
OliI CACNNNNGTG 2 cut(s) 52, 594
PceI AGGCCT 2 cut(s) 7, 680
PfeI GAWTC 2 cut(s) 183, 438
PfoI TCCNGGA 1 cut(s) 649
PkrI GCNGC 3 cut(s) 231, 348, 711
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 762
PsiI TTATAA 1 cut(s) 871
Psp6I CCWGG 1 cut(s) 649
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 3 cut(s) 264, 778, 833
PspPI GGNCC 1 cut(s) 653
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 3 cut(s) 296, 537, 831
RsaI GTAC 2 cut(s) 314, 778
RsaNI GTAC 2 cut(s) 313, 777
RseI CAYNNNNRTG 3 cut(s) 52, 417, 594
SaqAI TTAA 2 cut(s) 390, 510
SatI GCNGC 3 cut(s) 230, 347, 710
Sau3AI GATC 3 cut(s) 296, 537, 831
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 2 cut(s) 507, 731
SetI ASST 6 cut(s) 44, 594, 764, 778, 785, 861
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 2 cut(s) 168, 193
SinI GGWCC 1 cut(s) 653
SmiMI CAYNNNNRTG 3 cut(s) 52, 417, 594
SnaBI TACGTA 1 cut(s) 762
Sse9I AATT 6 cut(s) 288, 360, 637, 672, 716, 805
SseBI AGGCCT 2 cut(s) 7, 680
SsiI CCGC 3 cut(s) 83, 304, 709
SspMI CTAG 2 cut(s) 39, 786
StuI AGGCCT 2 cut(s) 7, 680
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 1 cut(s) 772
TaiI ACGT 2 cut(s) 764, 785
TasI AATT 6 cut(s) 288, 360, 637, 672, 716, 805
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 712
TfiI GAWTC 2 cut(s) 183, 438
Tru1I TTAA 2 cut(s) 390, 510
Tru9I TTAA 2 cut(s) 390, 510
TscAI CASTG 2 cut(s) 211, 736
TseI GCWGC 2 cut(s) 229, 346
TspDTI ATGAA 6 cut(s) 162, 209, 224, 567, 742, 816
TspRI CASTG 2 cut(s) 211, 736
VneI GTGCAC 1 cut(s) 727
VpaK11BI GGWCC 1 cut(s) 653
XapI RAATTY 2 cut(s) 716, 805
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 2 cut(s) 39, 786
Zsp2I ATGCAT 2 cut(s) 414, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.