Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007744

Physical Location & Seq

Genomic Coordinates Reverse (-)

23491481 .. 23497557

Gene Structure 6077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG246900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGATGGCTTTGGTTCCTTTGGGTTCTGAGTTGGAGAGAATTATGGGATCTGTCCGCTTGTTGTACATAATCATTCTGTTGGCTACAACCAATGCTCTGCTCCATCTTCTAATTGCACTTTTGGTGGCCTATAATCCTATTAAGCCTTTTGAGTATTTGATGCATGAGTGTGCAATAGGCTTCTCAGGAATCTTGTTTTCTATGATTGTAATAGAGACAAGTCTGAGTGGACAGCAATACAGAAGTGTGTTTGGGCTCTTTAATGTGCCTGCTAAATGGTATGCATGGATCTTACTGGTAGTGTTCCAACTTGTTATGTCTAATGTTTCATTACTGGGACACCTGTGTGGTATTCTGTCTGGCTTCGCATATAGTTACGGCTTGTTCAATTTCCTCATTCCTGGACCATCCTTCTATTCCAAAATTGAGGCCTCCTCGTTGCTTTCAACTTGTGTGAGGCGGCCTAAATTTATTTTGTGCACTGGTGGAAATCCCTCTGCCTTCATCCCTACGTATTCAAGCCAAGGTACCACGTCTAGTGGATTGTTTTCGGCAAATTTGTGGAGAAACTTATCTTCATGGATCCCACAGAGGGAAACATCTTCACAGGCAACACAAGACGACATATTTCCTGGGAGGGGTAGGACACTAGGGTCCGCTCAAGGTCAGGCTGTTTCTGATGTTGATTCAGAGTCAAACTTACAGGCTAGACTGTTGGATAATAGTGACTCAGAACATCCATCTGATGCAGGACGGCAGTTATCTGATGGAAGGCAAACAGTAAATAATACGGTGGCAGCTGGAGCTGAAATTCCTGTTCACCATCAGGATTATGTGGCTTCTGAAGAAGAAATACAAAAGCTTGTATCAATGGGTTTTGAAAGGACACAGGTTGAAGTTGCACTAGCAGCTGCAGATGGTGATATTAATGTGGCAGTCGAAATTCTGAGCCAACAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid UBA

Protein Analysis

320

Amino Acids

34.79

Weight (kDa)

5.12

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	1 - 130	1.8e-16	Rhomboid domain
UBA	PF00627	282 - 316	7.2e-10	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58460 AT3G58460
fragaria_vesca	FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260
malus_domestica	MD12G1049100.v1.1 MD14G1048000.v1.1
prunus_persica	Prupe.7G087100_v2.0.a1
pyrus_communis	pycom12g04400 pycom14g03950
rosa_chinensis	RchiOBHm_Chr3g0477721
rosa_laevigata	RLG00000023695
rosa_multiflora	Rmu_sc0006187.1_g000017
rosa_roxburghii	Rroxscaffold_6G00403720
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213200 Rh3BG246900 Rh3CG240700 Rh3DG240000
rosa_wichuraiana	Rw3G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	652
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	659
AciI	CCGC	3 cut(s)	55, 460, 657
AclWI	GGATC	4 cut(s)	55, 296, 577, 590
AcsI	RAATTY	4 cut(s)	467, 556, 810, 942
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	2 cut(s)	65, 529
AfiI	CCNNNNNNNGG	2 cut(s)	592, 638
AgsI	TTSAA	5 cut(s)	388, 447, 519, 881, 896
AjiI	CACGTC	1 cut(s)	534
AjnI	CCWGG	2 cut(s)	400, 631
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	4 cut(s)	800, 806, 862, 911
AluI	AGCT	4 cut(s)	800, 806, 862, 911
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	1 cut(s)	209
Alw44I	GTGCAC	1 cut(s)	478
AlwI	GGATC	4 cut(s)	55, 296, 577, 590
AoxI	GGCC	3 cut(s)	126, 429, 461
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	3 cut(s)	797, 908, 911
ApoI	RAATTY	4 cut(s)	467, 556, 810, 942
AseI	ATTAAT	1 cut(s)	927
Asp718I	GGTACC	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	404, 654
AsuHPI	GGTGA	2 cut(s)	812, 932
AvaII	GGWCC	2 cut(s)	404, 654
BaeGI	GKGCMC	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	258
BarI	GAAGNNNNNNTAC	2 cut(s)	837, 869
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	809, 898, 920
BccI	CCATC	6 cut(s)	111, 415, 748, 761, 831, 911
BceAI	ACGGC	2 cut(s)	394, 770
BciT130I	CCWGG	2 cut(s)	402, 633
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	4 cut(s)	537, 650, 708, 905
BfmI	CTRYAG	1 cut(s)	912
BisI	GCNGC	4 cut(s)	461, 798, 909, 912
BlsI	GCNGC	4 cut(s)	462, 799, 910, 913
Bme1390I	CCNGG	2 cut(s)	402, 633
Bme18I	GGWCC	2 cut(s)	404, 654
BmgBI	CACGTC	1 cut(s)	534
BmgT120I	GGNCC	2 cut(s)	404, 654
BmiI	GGNNCC	4 cut(s)	15, 529, 584, 655
BmrFI	CCNGG	2 cut(s)	402, 633
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	2 cut(s)	150, 736
BmuI	ACTGGG	1 cut(s)	344
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	523, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 638
Bse1I	ACTGG	3 cut(s)	300, 339, 487
BseBI	CCWGG	2 cut(s)	402, 633
BseDI	CCNNGG	2 cut(s)	523, 632
BseGI	GGATG	3 cut(s)	407, 504, 736
BseLI	CCNNNNNNNGG	2 cut(s)	592, 638
BseMII	CTCAG	5 cut(s)	18, 198, 215, 744, 938
BseNI	ACTGG	3 cut(s)	300, 339, 487
BseRI	GAGGAG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	809, 898, 920
BshFI	GGCC	3 cut(s)	128, 431, 463
BshNI	GGYRCC	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	482
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	592, 638
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	128, 431, 463
Bsp1286I	GDGCHC	2 cut(s)	258, 482
Bsp1407I	TGTACA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	47, 288, 582
BspACI	CCGC	3 cut(s)	55, 460, 657
BspANI	GGCC	3 cut(s)	128, 431, 463
BspCNI	CTCAG	5 cut(s)	19, 197, 216, 743, 939
BspLI	GGNNCC	4 cut(s)	15, 529, 584, 655
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	4 cut(s)	55, 296, 577, 590
BspT107I	GGYRCC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	659
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	300, 339, 487
BssECI	CCNNGG	2 cut(s)	523, 632
BssMI	GATC	3 cut(s)	47, 288, 582
BssT1I	CCWWGG	1 cut(s)	523
Bst2UI	CCWGG	2 cut(s)	402, 633
Bst4CI	ACNGT	3 cut(s)	714, 781, 793
BstAUI	TGTACA	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	5 cut(s)	27, 184, 224, 730, 947
BstF5I	GGATG	3 cut(s)	407, 504, 736
BstKTI	GATC	3 cut(s)	50, 291, 585
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	3 cut(s)	47, 288, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 908
BstNI	CCWGG	2 cut(s)	402, 633
BstSCI	CCNGG	2 cut(s)	400, 631
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	1 cut(s)	482
BstSNI	TACGTA	1 cut(s)	513
BstV1I	GCAGC	3 cut(s)	809, 898, 920
BstX2I	RGATCY	3 cut(s)	47, 288, 582
BstYI	RGATCY	3 cut(s)	47, 288, 582
BsuRI	GGCC	3 cut(s)	128, 431, 463
BtrI	CACGTC	1 cut(s)	534
BtsCI	GGATG	3 cut(s)	407, 504, 736
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	404, 654
Csp6I	GTAC	2 cut(s)	64, 528
CviAII	CATG	3 cut(s)	164, 285, 579
CviQI	GTAC	2 cut(s)	64, 528
DdeI	CTNAG	5 cut(s)	27, 184, 224, 730, 947
DpnI	GATC	3 cut(s)	49, 290, 584
DpnII	GATC	3 cut(s)	47, 288, 582
DrdI	GACNNNNNNGTC	1 cut(s)	652
DseDI	GACNNNNNNGTC	1 cut(s)	652
Eco105I	TACGTA	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	523
Eco147I	AGGCCT	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	404, 654
Eco57I	CTGAAG	1 cut(s)	864
EcoRII	CCWGG	2 cut(s)	400, 631
EcoT14I	CCWWGG	1 cut(s)	523
EcoT22I	ATGCAT	2 cut(s)	165, 286
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	3 cut(s)	167, 288, 582
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	3 cut(s)	163, 284, 578
Fnu4HI	GCNGC	4 cut(s)	461, 798, 909, 912
FokI	GGATG	3 cut(s)	394, 491, 723
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	461, 798, 909, 912
FspBI	CTAG	4 cut(s)	537, 650, 708, 905
GluI	GCNGC	4 cut(s)	461, 798, 909, 912
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	3 cut(s)	128, 431, 463
Hin1II	CATG	3 cut(s)	167, 288, 582
HindIII	AAGCTT	1 cut(s)	860
HinfI	GANTC	4 cut(s)	189, 686, 692, 728
HphI	GGTGA	2 cut(s)	812, 932
Hpy166II	GTNNAC	3 cut(s)	230, 480, 820
Hpy188I	TCNGA	9 cut(s)	28, 225, 679, 691, 733, 745, 766, 844, 948
Hpy188III	TCNNGA	2 cut(s)	186, 827
Hpy8I	GTNNAC	3 cut(s)	230, 480, 820
HpyAV	CCTTC	3 cut(s)	421, 511, 765
HpyCH4III	ACNGT	3 cut(s)	714, 781, 793
HpyCH4IV	ACGT	2 cut(s)	512, 533
HpyCH4V	TGCA	8 cut(s)	116, 163, 173, 284, 480, 749, 902, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 908
HpyF3I	CTNAG	5 cut(s)	27, 184, 224, 730, 947
HpySE526I	ACGT	2 cut(s)	512, 533
Hsp92II	CATG	3 cut(s)	167, 288, 582
KpnI	GGTACC	1 cut(s)	531
Kzo9I	GATC	3 cut(s)	47, 288, 582
LmnI	GCTCC	2 cut(s)	105, 803
Lsp1109I	GCAGC	3 cut(s)	809, 898, 920
LweI	GCATC	2 cut(s)	150, 736
MaeI	CTAG	4 cut(s)	537, 650, 708, 905
MaeII	ACGT	2 cut(s)	512, 533
MaeIII	GTNAC	2 cut(s)	374, 725
MalI	GATC	3 cut(s)	49, 290, 584
MbiI	CCGCTC	1 cut(s)	659
MboI	GATC	3 cut(s)	47, 288, 582
MboII	GAAGA	5 cut(s)	98, 567, 594, 857, 860
MflI	RGATCY	3 cut(s)	47, 288, 582
MhlI	GDGCHC	2 cut(s)	258, 482
MluCI	AATT	8 cut(s)	39, 111, 388, 423, 467, 556, 810, 942
MlyI	GAGTC	2 cut(s)	701, 722
MmeI	TCCRAC	3 cut(s)	12, 331, 696
MnlI	CCTC	8 cut(s)	404, 421, 442, 445, 450, 505, 585, 630
Mph1103I	ATGCAT	2 cut(s)	165, 286
MseI	TTAA	4 cut(s)	141, 261, 927, 961
MslI	CAYNNNNRTG	2 cut(s)	168, 345
MspA1I	CMGCKG	2 cut(s)	800, 911
MspR9I	CCNGG	2 cut(s)	402, 633
MvaI	CCWGG	2 cut(s)	402, 633
MwoI	GCNNNNNNNGC	2 cut(s)	803, 908
NdeII	GATC	3 cut(s)	47, 288, 582
NlaIII	CATG	3 cut(s)	167, 288, 582
NlaIV	GGNNCC	4 cut(s)	15, 529, 584, 655
NmuCI	GTSAC	1 cut(s)	725
NsiI	ATGCAT	2 cut(s)	165, 286
OliI	CACNNNNGTG	1 cut(s)	345
PceI	AGGCCT	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	189, 686
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	4 cut(s)	462, 799, 910, 913
PleI	GAGTC	2 cut(s)	700, 722
PpsI	GAGTC	2 cut(s)	700, 722
Ppu21I	YACGTR	1 cut(s)	513
PshBI	ATTAAT	1 cut(s)	927
Psp6I	CCWGG	2 cut(s)	400, 631
PspGI	CCWGG	2 cut(s)	400, 631
PspN4I	GGNNCC	4 cut(s)	15, 529, 584, 655
PspPI	GGNCC	2 cut(s)	404, 654
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	3 cut(s)	47, 288, 582
PvuII	CAGCTG	2 cut(s)	800, 911
RsaI	GTAC	2 cut(s)	65, 529
RsaNI	GTAC	2 cut(s)	64, 528
RseI	CAYNNNNRTG	2 cut(s)	168, 345
SaqAI	TTAA	4 cut(s)	141, 261, 927, 961
SatI	GCNGC	4 cut(s)	461, 798, 909, 912
Sau3AI	GATC	3 cut(s)	47, 288, 582
Sau96I	GGNCC	2 cut(s)	404, 654
SchI	GAGTC	2 cut(s)	701, 722
ScrFI	CCNGG	2 cut(s)	402, 633
SduI	GDGCHC	2 cut(s)	258, 482
SfaNI	GCATC	2 cut(s)	150, 736
SfcI	CTRYAG	1 cut(s)	912
SinI	GGWCC	2 cut(s)	404, 654
SmiMI	CAYNNNNRTG	2 cut(s)	168, 345
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
SnaBI	TACGTA	1 cut(s)	513
Sse9I	AATT	8 cut(s)	39, 111, 388, 423, 467, 556, 810, 942
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	3 cut(s)	55, 460, 657
SspMI	CTAG	4 cut(s)	537, 650, 708, 905
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	400, 631
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	3 cut(s)	714, 781, 793
TaiI	ACGT	2 cut(s)	515, 536
TaqI	TCGA	1 cut(s)	939
TasI	AATT	8 cut(s)	39, 111, 388, 423, 467, 556, 810, 942
TatI	WGTACW	1 cut(s)	63
TauI	GCSGC	1 cut(s)	463
TfiI	GAWTC	2 cut(s)	189, 686
Tru1I	TTAA	4 cut(s)	141, 261, 927, 961
Tru9I	TTAA	4 cut(s)	141, 261, 927, 961
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	3 cut(s)	797, 908, 911
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	3 cut(s)	318, 493, 567
TspRI	CASTG	1 cut(s)	487
VneI	GTGCAC	1 cut(s)	478
VpaK11BI	GGWCC	2 cut(s)	404, 654
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	4 cut(s)	467, 556, 810, 942
XspI	CTAG	4 cut(s)	537, 650, 708, 905
Zsp2I	ATGCAT	2 cut(s)	165, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.