Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007744

Physical Location & Seq

Genomic Coordinates Reverse (-)

3424601 .. 3426976

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03950.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAATGAATGTGCAATAGGCTTCTCGGGAATCTTGTTTTCTATGATTGTTATAGAGACAAGTCTAAGTGGACACCAGTCTAGAAGTGTGTTTGGACTCTTTAATGTGCCTGCTAAATGGTATGCATGGATCTTGCTGGTAGTGTTCCAAGTTGTTATGCCAAATGTTTCTTTACTGGGACACCTATGTGGCATTTTGTCAGGCTTTGCTTATACTTACAGCTTATTAAATTTCCTCATTCCGGGAACATCCTTCTATTCTAAAATTGAGGCCTCCTCATTGTTTTCAAGTTGTGTGAGGCGGCCTAAATTTATTGTGTGCACTGGTGGGAATCCTTCAGCCTTCATCCCTACATATTCAACCCAAGGTACACCATCTAGTGGATTCTCTGCTGGAAGTATCTGGAGAAACTTGTCTCCGTGGATCCCACATAGGGAAACATCTGTACAGTCAGCACAAGACGGTCACAGGTTTCCTGGGAGGGGAAGAACACTTGGATCTGGTCGAAGTACTGTTTCTGATGCAGATTCAGAATCAAATTTACAGGCTAGACTCTTGGACAATAGCAACTCAGAACGTCCATCAGATGTGGCAGTTATTGGTACAGGACAGCAGTTATCTGATGGAAGGCGGGCAACACTAAATAGTGCAGCAGCAGAAATTCCTGTACACCACCAGATGCAGGATTATGTTGCTTCTGAAGAAGAAATCAAAAAGCTTGTGTCAATGGGTTTTGAGAGGACACAGGTAGAAGTTGCCCTAGCAGCTGCAGATGGCGATCTTAACGTGGCAGCGGAAATTCTGAGCCAACAGGTCTGTCGGCTAAATGCAAGCAAGCAAGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid UBA

Protein Analysis

283

Amino Acids

30.4

Weight (kDa)

6.59

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58460 AT3G58460
fragaria_vesca	FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260 FvH4_6g21260
malus_domestica	MD12G1049100.v1.1 MD14G1048000.v1.1
prunus_persica	Prupe.7G087100_v2.0.a1
pyrus_communis	pycom12g04400 pycom14g03950
rosa_chinensis	RchiOBHm_Chr3g0477721
rosa_laevigata	RLG00000023695
rosa_multiflora	Rmu_sc0006187.1_g000017
rosa_roxburghii	Rroxscaffold_6G00403720
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213200 Rh3BG246900 Rh3CG240700 Rh3DG240000
rosa_wichuraiana	Rw3G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AciI	CCGC	3 cut(s)	301, 631, 794
AclWI	GGATC	4 cut(s)	137, 418, 431, 505
AcsI	RAATTY	5 cut(s)	229, 308, 538, 660, 798
AcuI	CTGAAG	2 cut(s)	321, 720
AfaI	GTAC	5 cut(s)	370, 447, 511, 604, 669
AfiI	CCNNNNNNNGG	5 cut(s)	241, 380, 433, 482, 682
AgsI	TTSAA	2 cut(s)	288, 360
AjnI	CCWGG	1 cut(s)	475
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	4 cut(s)	222, 718, 767, 846
AluI	AGCT	4 cut(s)	222, 718, 767, 846
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	2 cut(s)	50, 420
Alw44I	GTGCAC	1 cut(s)	319
AlwI	GGATC	4 cut(s)	137, 418, 431, 505
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	270, 302
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	5 cut(s)	650, 653, 764, 767, 791
ApoI	RAATTY	5 cut(s)	229, 308, 538, 660, 798
AsuC2I	CCSGG	1 cut(s)	243
AvaI	CYCGRG	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	5 cut(s)	662, 665, 754, 776, 803
BccI	CCATC	4 cut(s)	382, 589, 617, 767
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	50, 420
BfaI	CTAG	4 cut(s)	81, 378, 549, 761
BfmI	CTRYAG	1 cut(s)	768
BisI	GCNGC	6 cut(s)	302, 651, 654, 765, 768, 792
BlsI	GCNGC	6 cut(s)	303, 652, 655, 766, 769, 793
BmcAI	AGTACT	1 cut(s)	511
Bme1390I	CCNGG	2 cut(s)	243, 477
BmeT110I	CYCGRG	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	2 cut(s)	243, 477
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	2 cut(s)	511, 669
BmuI	ACTGGG	1 cut(s)	185
BoxI	GACNNNNGTC	1 cut(s)	76
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	424
BpuMI	CCSGG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	3 cut(s)	364, 419, 476
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 380, 433, 482, 682
Bse1I	ACTGG	3 cut(s)	76, 180, 328
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	364, 419, 476
BseGI	GGATG	2 cut(s)	248, 345
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	5 cut(s)	241, 380, 433, 482, 682
BseMII	CTCAG	2 cut(s)	585, 794
BseNI	ACTGG	3 cut(s)	76, 180, 328
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	5 cut(s)	662, 665, 754, 776, 803
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	2 cut(s)	272, 304
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	5 cut(s)	241, 380, 433, 482, 682
BsmAI	GTCTC	2 cut(s)	50, 420
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	272, 304
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp1407I	TGTACA	2 cut(s)	445, 667
Bsp143I	GATC	4 cut(s)	129, 423, 497, 778
BspACI	CCGC	3 cut(s)	301, 631, 794
BspANI	GGCC	2 cut(s)	272, 304
BspCNI	CTCAG	2 cut(s)	584, 795
BspLI	GGNNCC	1 cut(s)	425
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	4 cut(s)	137, 418, 431, 505
BsrGI	TGTACA	2 cut(s)	445, 667
BsrI	ACTGG	3 cut(s)	76, 180, 328
BssECI	CCNNGG	3 cut(s)	364, 419, 476
BssMI	GATC	4 cut(s)	129, 423, 497, 778
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	450, 464, 514
BstAUI	TGTACA	2 cut(s)	445, 667
BstC8I	GCNNGC	6 cut(s)	111, 633, 832, 836, 840, 844
BstDEI	CTNAG	3 cut(s)	65, 571, 803
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	2 cut(s)	248, 345
BstKTI	GATC	4 cut(s)	132, 426, 500, 781
BstMAI	GTCTC	2 cut(s)	50, 420
BstMBI	GATC	4 cut(s)	129, 423, 497, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstNI	CCWGG	1 cut(s)	477
BstPAI	GACNNNNGTC	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	241, 475
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	5 cut(s)	662, 665, 754, 776, 803
BstX2I	RGATCY	3 cut(s)	129, 423, 497
BstYI	RGATCY	3 cut(s)	129, 423, 497
BsuRI	GGCC	2 cut(s)	272, 304
BtgI	CCRYGG	1 cut(s)	419
BtsCI	GGATG	2 cut(s)	248, 345
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	6 cut(s)	111, 633, 832, 836, 840, 844
Csp6I	GTAC	5 cut(s)	369, 446, 510, 603, 668
CviAII	CATG	1 cut(s)	126
CviQI	GTAC	5 cut(s)	369, 446, 510, 603, 668
DdeI	CTNAG	3 cut(s)	65, 571, 803
DpnI	GATC	4 cut(s)	131, 425, 499, 780
DpnII	GATC	4 cut(s)	129, 423, 497, 778
Eco130I	CCWWGG	1 cut(s)	364
Eco147I	AGGCCT	1 cut(s)	272
Eco57I	CTGAAG	2 cut(s)	321, 720
Eco88I	CYCGRG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	1 cut(s)	129
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	1 cut(s)	125
FauI	CCCGC	1 cut(s)	624
Fnu4HI	GCNGC	6 cut(s)	302, 651, 654, 765, 768, 792
FokI	GGATG	2 cut(s)	235, 332
Fsp4HI	GCNGC	6 cut(s)	302, 651, 654, 765, 768, 792
FspBI	CTAG	4 cut(s)	81, 378, 549, 761
GluI	GCNGC	6 cut(s)	302, 651, 654, 765, 768, 792
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	272, 304
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	7 cut(s)	30, 96, 331, 384, 527, 533, 552
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	4 cut(s)	71, 321, 371, 670
Hpy188I	TCNGA	7 cut(s)	520, 532, 574, 586, 622, 700, 804
Hpy188III	TCNNGA	3 cut(s)	27, 81, 403
Hpy8I	GTNNAC	4 cut(s)	71, 321, 371, 670
HpyAV	CCTTC	4 cut(s)	262, 345, 352, 621
HpyCH4III	ACNGT	3 cut(s)	450, 464, 514
HpyCH4IV	ACGT	2 cut(s)	577, 786
HpyCH4V	TGCA	8 cut(s)	14, 125, 321, 524, 650, 682, 770, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	3 cut(s)	65, 571, 803
HpySE526I	ACGT	2 cut(s)	577, 786
Hsp92II	CATG	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	129, 423, 497, 778
Lsp1109I	GCAGC	5 cut(s)	662, 665, 754, 776, 803
LweI	GCATC	2 cut(s)	511, 669
MaeI	CTAG	4 cut(s)	81, 378, 549, 761
MaeII	ACGT	2 cut(s)	577, 786
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	4 cut(s)	131, 425, 499, 780
MboI	GATC	4 cut(s)	129, 423, 497, 778
MboII	GAAGA	3 cut(s)	498, 713, 716
MflI	RGATCY	3 cut(s)	129, 423, 497
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	6 cut(s)	229, 264, 308, 538, 660, 798
MlyI	GAGTC	2 cut(s)	90, 546
MnlI	CCTC	7 cut(s)	245, 262, 283, 286, 291, 474, 732
Mph1103I	ATGCAT	1 cut(s)	127
MseI	TTAA	3 cut(s)	102, 227, 783
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	2 cut(s)	767, 794
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	243, 477
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	764
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	4 cut(s)	129, 423, 497, 778
NlaIII	CATG	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	464
NsiI	ATGCAT	1 cut(s)	127
OliI	CACNNNNGTG	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	272
PfeI	GAWTC	5 cut(s)	30, 331, 384, 527, 533
PflMI	CCANNNNNTGG	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	6 cut(s)	303, 652, 655, 766, 769, 793
PleI	GAGTC	2 cut(s)	90, 546
PpsI	GAGTC	2 cut(s)	90, 546
PshAI	GACNNNNGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	772
PsuI	RGATCY	3 cut(s)	129, 423, 497
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	5 cut(s)	370, 447, 511, 604, 669
RsaNI	GTAC	5 cut(s)	369, 446, 510, 603, 668
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	102, 227, 783
SatI	GCNGC	6 cut(s)	302, 651, 654, 765, 768, 792
Sau3AI	GATC	4 cut(s)	129, 423, 497, 778
ScaI	AGTACT	1 cut(s)	511
SchI	GAGTC	2 cut(s)	90, 546
ScrFI	CCNGG	2 cut(s)	243, 477
SduI	GDGCHC	1 cut(s)	323
SfaNI	GCATC	2 cut(s)	511, 669
SfcI	CTRYAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	6 cut(s)	229, 264, 308, 538, 660, 798
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	3 cut(s)	301, 631, 794
SspMI	CTAG	4 cut(s)	81, 378, 549, 761
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	241, 475
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	3 cut(s)	450, 464, 514
TaiI	ACGT	2 cut(s)	580, 789
TaqI	TCGA	1 cut(s)	505
TasI	AATT	6 cut(s)	229, 264, 308, 538, 660, 798
TatI	WGTACW	3 cut(s)	445, 509, 667
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	5 cut(s)	30, 331, 384, 527, 533
Tru1I	TTAA	3 cut(s)	102, 227, 783
Tru9I	TTAA	3 cut(s)	102, 227, 783
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	5 cut(s)	650, 653, 764, 767, 791
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	3 cut(s)	17, 21, 334
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	319
XapI	RAATTY	5 cut(s)	229, 308, 538, 660, 798
XbaI	TCTAGA	1 cut(s)	80
XspI	CTAG	4 cut(s)	81, 378, 549, 761
ZrmI	AGTACT	1 cut(s)	511
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.