Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004895

Physical Location & Seq

Genomic Coordinates Forward (+)

21932337 .. 21935231

Gene Structure 2895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTATCCGATGGATTCTGATTACCATCGCCGTGGTCTGGTGGCAAACGATCGTTCACCAGCTCAGTTTGTTAGGCTGGATAAACCGAGAGCCGTAGACGATCTCTATATAGGCAAGAGAGAAAAGATGCGTAGGTGGTTGTGCTGTGCTTGCCACGTTGAAGAACCTTACCATTCTTCTGAAAATGAACACCTCAGAAGCCCTAAGCACCACAATGATTTTGGGCATCACACTAGAAAACCACAGGCGGCTGTGAAGCCTGATGCTTTGAAGGAGCCTCCATCTATTGATGTGCCTGCATTGTCATTGGATGAGTTGAAAGAAAAGACCGATAACTTTGGATCAAAGTCATTGATTGGTGAAGGATCTTACGGCAGAGCCTATTATGCAACCTTGAAAGATGGAAAGGCTGTCGCGGTGAAGAAGCTTGACAATGCAGCGGAACCTGAATCAAATGTTGAGTTCTTGACTCAGGTCTCTAGGGTTTCCAAGCTGAAGCACGATAATTTTGTTGAGCTCTTCGGTTATTGTGTTGAAGGGAATTTCCGCATTCTTGCGTATGAGTTTGCTACTATGGGATCTTTACATGACATCTTACACGGGAGGAAAGGAGTCCAAGGAGCACAACCAGGTCCTACGCTTGACTGGATCCAACGGGTCAGAATAGCAGTTGATGCAGCTAGAGGACTTGAGTATTTGCATGAGAAAGTTCAACCTGCAGTAATACACAGAGATATTCGATCTAGCAATGTGCTTCTCTTTGAAGATTTTAAAGCCAAGATCGCTGATTTTAATCTATCGAACCAATCTCCTGATATGGCTGCTCGTCTTCATTCTACCAGAGTTTTGGGAACCTTCGGTTACCACGCACCAGAGTATGCGATGACTGGTCAACTGACACAGAAGAGTGATGTTTATAGTTTTGGTGTGGTGCTTTTGGAGCTCTTGACTGGTAGGAAACCCGTCGATCATACGATGCCTCGTGGTCAACAAAGTCTTGTTACTTGGGCTACTCCAAGGCTAAGTGAAGACAAAGTGAAGCAATGTGTTGATCCAAAACTAAAGGGAGAATATCCTCCTAAAGCTGTTGCAAAGCTCGCTGCAGTAGCAGCATTGTGTGTGCAATATGAATCAGAGTTTAGGCCAAACATGAGCATTGTGGTAAAAGCTCTTCAACCATTGTTGAGGTCATCAACAGCAGCAGCTGTACCAGTCCAGGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

408

Amino Acids

45.66

Weight (kDa)

8.69

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	116 - 329	7.8e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	117 - 391	9.8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43230 AT2G43230 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350
fragaria_vesca	FvH4_4g11280 FvH4_4g11280 FvH4_4g11280
malus_domestica	MD04G1038500.v1.1 MD13G1258500.v1.1
prunus_persica	Prupe.1G189000_v2.0.a1 Prupe.1G189000_v2.0.a1
pyrus_communis	pycom13g25750
rosa_chinensis	RchiOBHm_Chr4g0407431
rosa_laevigata	RLG00000008720
rosa_multiflora	Rmu_sc0004841.1_g000042
rosa_roxburghii	Rroxscaffold_5G00352020
rosa_rugosa	Rorug04G0079700 Rorug04G0079700 Rorug04G0079800 Rorug04G0079900
rosa_samantha	Rh4AG144300 Rh4BG142200 Rh4CG150900 Rh4DG138300
rosa_wichuraiana	Rw0G014480 Rw4G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	416
AciI	CCGC	4 cut(s)	248, 416, 440, 547
AclWI	GGATC	6 cut(s)	349, 373, 586, 643, 656, 1046
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	1 cut(s)	1209
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	8 cut(s)	161, 271, 319, 397, 536, 713, 764, 1175
AjnI	CCWGG	2 cut(s)	628, 1215
Alw21I	GWGCWC	3 cut(s)	519, 625, 945
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	6 cut(s)	349, 373, 586, 643, 656, 1046
AlwNI	CAGNNNCTG	1 cut(s)	1205
AoxI	GGCC	1 cut(s)	1142
ApeKI	GCWGC	7 cut(s)	437, 677, 821, 1100, 1109, 1199, 1202
ApoI	RAATTY	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	632
AsuHPI	GGTGA	3 cut(s)	48, 371, 430
AvaII	GGWCC	1 cut(s)	632
BamHI	GGATCC	1 cut(s)	648
BanII	GRGCYC	2 cut(s)	519, 945
BarI	GAAGNNNNNNTAC	2 cut(s)	1155, 1187
BauI	CACGAG	1 cut(s)	981
BbsI	GAAGAC	2 cut(s)	821, 1035
Bbv12I	GWGCWC	3 cut(s)	519, 625, 945
BbvI	GCAGC	7 cut(s)	449, 689, 808, 1087, 1121, 1211, 1214
BccI	CCATC	4 cut(s)	4, 33, 289, 395
BceAI	ACGGC	3 cut(s)	15, 77, 388
BciT130I	CCWGG	2 cut(s)	630, 1217
BciVI	GTATCC	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	4 cut(s)	234, 480, 681, 744
BfmI	CTRYAG	2 cut(s)	717, 1101
BfuAI	ACCTGC	1 cut(s)	724
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	8 cut(s)	249, 438, 678, 822, 1101, 1110, 1200, 1203
BlsI	GCNGC	8 cut(s)	250, 439, 679, 823, 1102, 1111, 1201, 1204
Bme1390I	CCNGG	2 cut(s)	630, 1217
Bme18I	GGWCC	1 cut(s)	632
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	4 cut(s)	276, 444, 650, 853
BmrFI	CCNGG	2 cut(s)	630, 1217
BmsI	GCATC	5 cut(s)	117, 235, 253, 664, 966
BoxI	GACNNNNGTC	1 cut(s)	473
BpiI	GAAGAC	2 cut(s)	821, 1035
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	710
BsaBI	GATNNNNATC	2 cut(s)	24, 792
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	3 cut(s)	31, 616, 1016
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	4 cut(s)	650, 892, 955, 1211
Bse3DI	GCAATG	2 cut(s)	754, 1049
Bse8I	GATNNNNATC	2 cut(s)	24, 792
BseBI	CCWGG	2 cut(s)	630, 1217
BseDI	CCNNGG	3 cut(s)	31, 616, 1016
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	2 cut(s)	24, 792
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	2 cut(s)	754, 1049
BseMII	CTCAG	3 cut(s)	77, 208, 485
BseNI	ACTGG	4 cut(s)	650, 892, 955, 1211
BseXI	GCAGC	7 cut(s)	449, 689, 808, 1087, 1121, 1211, 1214
Bsh1236I	CGCG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	1144
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	3 cut(s)	519, 625, 945
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	1 cut(s)	1144
Bso31I	GGTCTC	1 cut(s)	481
Bsp1286I	GDGCHC	3 cut(s)	519, 625, 945
BspACI	CCGC	4 cut(s)	248, 416, 440, 547
BspANI	GGCC	1 cut(s)	1144
BspCNI	CTCAG	3 cut(s)	76, 207, 484
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	4 cut(s)	276, 444, 650, 853
BspMAI	CTGCAG	2 cut(s)	721, 1105
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	6 cut(s)	349, 373, 586, 643, 656, 1046
BspQI	GCTCTTC	2 cut(s)	524, 1176
BspTNI	GGTCTC	1 cut(s)	481
BsrDI	GCAATG	2 cut(s)	754, 1049
BsrI	ACTGG	4 cut(s)	650, 892, 955, 1211
BssECI	CCNNGG	3 cut(s)	31, 616, 1016
BssSI	CACGAG	1 cut(s)	981
BssT1I	CCWWGG	2 cut(s)	616, 1016
Bst2BI	CACGAG	1 cut(s)	981
Bst2UI	CCWGG	2 cut(s)	630, 1217
Bst6I	CTCTTC	3 cut(s)	524, 899, 1176
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	151, 297, 1098
BstDEI	CTNAG	5 cut(s)	63, 194, 204, 471, 1022
BstDSI	CCRYGG	1 cut(s)	31
BstEII	GGTNACC	1 cut(s)	860
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	416
BstMAI	GTCTC	1 cut(s)	481
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	8 cut(s)	150, 386, 674, 782, 940, 1097, 1106, 1109
BstNI	CCWGG	2 cut(s)	630, 1217
BstPAI	GACNNNNGTC	1 cut(s)	473
BstPI	GGTNACC	1 cut(s)	860
BstSCI	CCNGG	2 cut(s)	628, 1215
BstSFI	CTRYAG	2 cut(s)	717, 1101
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	7 cut(s)	449, 689, 808, 1087, 1121, 1211, 1214
BstV2I	GAAGAC	2 cut(s)	821, 1035
BstX2I	RGATCY	3 cut(s)	365, 578, 648
BstXI	CCANNNNNNTGG	2 cut(s)	32, 847
BstYI	RGATCY	3 cut(s)	365, 578, 648
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	1144
BtgI	CCRYGG	1 cut(s)	31
BtgZI	GCGATG	2 cut(s)	11, 896
BtsCI	GGATG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	3 cut(s)	151, 297, 1098
CaiI	CAGNNNCTG	1 cut(s)	1205
Cfr13I	GGNCC	1 cut(s)	632
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	1208
CviAII	CATG	3 cut(s)	587, 701, 1150
CviQI	GTAC	1 cut(s)	1208
DdeI	CTNAG	5 cut(s)	63, 194, 204, 471, 1022
DraI	TTTAAA	1 cut(s)	772
Eam1104I	CTCTTC	3 cut(s)	524, 899, 1176
EarI	CTCTTC	3 cut(s)	524, 899, 1176
Ecl136II	GAGCTC	2 cut(s)	517, 943
Eco130I	CCWWGG	2 cut(s)	616, 1016
Eco24I	GRGCYC	2 cut(s)	519, 945
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	632
Eco53kI	GAGCTC	2 cut(s)	517, 943
Eco57I	CTGAAG	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	860
EcoICRI	GAGCTC	2 cut(s)	517, 943
EcoO109I	RGGNCCY	1 cut(s)	632
EcoO65I	GGTNACC	1 cut(s)	860
EcoRII	CCWGG	2 cut(s)	628, 1215
EcoT14I	CCWWGG	2 cut(s)	616, 1016
EcoT38I	GRGCYC	2 cut(s)	519, 945
ErhI	CCWWGG	2 cut(s)	616, 1016
FaeI	CATG	3 cut(s)	590, 704, 1153
FatI	CATG	3 cut(s)	586, 700, 1149
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	8 cut(s)	249, 438, 678, 822, 1101, 1110, 1200, 1203
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	2 cut(s)	519, 945
Fsp4HI	GCNGC	8 cut(s)	249, 438, 678, 822, 1101, 1110, 1200, 1203
FspBI	CTAG	4 cut(s)	234, 480, 681, 744
GluI	GCNGC	8 cut(s)	249, 438, 678, 822, 1101, 1110, 1200, 1203
HaeIII	GGCC	1 cut(s)	1144
Hin1II	CATG	3 cut(s)	590, 704, 1153
HincII	GTYRAC	2 cut(s)	893, 989
HindII	GTYRAC	2 cut(s)	893, 989
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	5 cut(s)	14, 449, 469, 612, 1130
HphI	GGTGA	3 cut(s)	48, 371, 430
Hpy166II	GTNNAC	4 cut(s)	56, 97, 893, 989
Hpy188I	TCNGA	6 cut(s)	9, 19, 181, 197, 662, 1135
Hpy188III	TCNNGA	3 cut(s)	466, 812, 946
Hpy8I	GTNNAC	4 cut(s)	56, 97, 893, 989
Hpy99I	CGWCG	1 cut(s)	968
HpyAV	CCTTC	4 cut(s)	265, 356, 530, 865
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	9 cut(s)	299, 389, 437, 677, 700, 719, 1091, 1103, 1123
HpyF10VI	GCNNNNNNNGC	8 cut(s)	150, 386, 674, 782, 940, 1097, 1106, 1109
HpyF3I	CTNAG	5 cut(s)	63, 194, 204, 471, 1022
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	590, 704, 1153
LguI	GCTCTTC	2 cut(s)	524, 1176
LmnI	GCTCC	3 cut(s)	274, 620, 940
Lsp1109I	GCAGC	7 cut(s)	449, 689, 808, 1087, 1121, 1211, 1214
LweI	GCATC	5 cut(s)	117, 235, 253, 664, 966
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	4 cut(s)	234, 480, 681, 744
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	860, 1000
MboII	GAAGA	9 cut(s)	168, 173, 433, 511, 776, 821, 916, 1040, 1163
MflI	RGATCY	3 cut(s)	365, 578, 648
MhlI	GDGCHC	3 cut(s)	519, 625, 945
MluCI	AATT	2 cut(s)	505, 541
MlyI	GAGTC	2 cut(s)	463, 621
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	7 cut(s)	203, 288, 597, 677, 990, 1086, 1179
MseI	TTAA	2 cut(s)	771, 792
MslI	CAYNNNNRTG	2 cut(s)	30, 213
MspA1I	CMGCKG	2 cut(s)	440, 1205
MspR9I	CCNGG	2 cut(s)	630, 1217
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	2 cut(s)	630, 1217
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	8 cut(s)	150, 386, 674, 782, 940, 1097, 1106, 1109
NlaIII	CATG	3 cut(s)	590, 704, 1153
NlaIV	GGNNCC	4 cut(s)	276, 444, 650, 853
PciSI	GCTCTTC	2 cut(s)	524, 1176
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	3 cut(s)	14, 449, 1130
PfoI	TCCNGGA	1 cut(s)	1215
PkrI	GCNGC	8 cut(s)	250, 439, 679, 823, 1102, 1111, 1201, 1204
Ple19I	CGATCG	1 cut(s)	52
PleI	GAGTC	2 cut(s)	463, 620
PpsI	GAGTC	2 cut(s)	463, 620
PpuMI	RGGWCCY	1 cut(s)	632
PshAI	GACNNNNGTC	1 cut(s)	473
Psp124BI	GAGCTC	2 cut(s)	519, 945
Psp5II	RGGWCCY	1 cut(s)	632
Psp6I	CCWGG	2 cut(s)	628, 1215
PspEI	GGTNACC	1 cut(s)	860
PspGI	CCWGG	2 cut(s)	628, 1215
PspN4I	GGNNCC	4 cut(s)	276, 444, 650, 853
PspPI	GGNCC	1 cut(s)	632
PspPPI	RGGWCCY	1 cut(s)	632
PstI	CTGCAG	2 cut(s)	721, 1105
PstNI	CAGNNNCTG	1 cut(s)	1205
PsuI	RGATCY	3 cut(s)	365, 578, 648
PvuI	CGATCG	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	1205
RsaI	GTAC	1 cut(s)	1209
RsaNI	GTAC	1 cut(s)	1208
RseI	CAYNNNNRTG	2 cut(s)	30, 213
SacI	GAGCTC	2 cut(s)	519, 945
SapI	GCTCTTC	2 cut(s)	524, 1176
SaqAI	TTAA	2 cut(s)	771, 792
SatI	GCNGC	8 cut(s)	249, 438, 678, 822, 1101, 1110, 1200, 1203
Sau96I	GGNCC	1 cut(s)	632
SchI	GAGTC	2 cut(s)	463, 621
ScrFI	CCNGG	2 cut(s)	630, 1217
SduI	GDGCHC	3 cut(s)	519, 625, 945
SexAI	ACCWGGT	1 cut(s)	628
SfaNI	GCATC	5 cut(s)	117, 235, 253, 664, 966
SfcI	CTRYAG	2 cut(s)	717, 1101
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	2 cut(s)	30, 213
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	2 cut(s)	505, 541
SsiI	CCGC	4 cut(s)	248, 416, 440, 547
SspMI	CTAG	4 cut(s)	234, 480, 681, 744
SstI	GAGCTC	2 cut(s)	519, 945
StyD4I	CCNGG	2 cut(s)	628, 1215
StyI	CCWWGG	2 cut(s)	616, 1016
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	739, 800, 966
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	2 cut(s)	505, 541
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	3 cut(s)	14, 449, 1130
Tru1I	TTAA	2 cut(s)	771, 792
Tru9I	TTAA	2 cut(s)	771, 792
TseI	GCWGC	7 cut(s)	437, 677, 821, 1100, 1109, 1199, 1202
TspDTI	ATGAA	3 cut(s)	201, 821, 1143
VpaK11BI	GGWCC	1 cut(s)	632
XapI	RAATTY	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	4 cut(s)	234, 480, 681, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.