Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004895

Physical Location & Seq

Genomic Coordinates Forward (+)

36493508 .. 36499983

Gene Structure 6476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG144300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGGGCAGAGACTGTCGTAGCCGTGGTTTAGTGGCACATGCCCCTCCCCCTGGTTACTTTGTGAGACTTGAGAATACAAGCGCTGACGACGATTTTTATTTGAGGAAGAAAGTCAGGATGCGCAGGTGGCTTTGTTGTTCTTGTCACGTGGAGGAGTCTTATTCAGCACATGAAAATGAACACCTGAAGAGCCCAAGGAGTTATGATGGGAACAATAAGGGCACTAAGGTGACCACTCCTTTGAAGTCTGATGTACAAAAGGCAGCACCACCTATTGAAGTCCCTCCATTGTCTCTGGAGGAGCTGAAAGAGAAGACTGACAATTTTGGATCTAAGTCACTGATCGGTGAAGGATCATATGGGAGAGTCTACTATGCAAGCATGGATGATGGTAAAGCTGTTGCCGTCAAGAAGCTTGACGTTGCATCTGAGCCCGAGTCAAATGTTGAGTTTCTGACCCAGGTTTCCATGGTTTCTAGACTGAAGCACGACAATCTTGTTGAGCTGCTTGGTTACTGTGTTGAAGGAAGTCTGCGAGTGCTTGCGTATGAGTTTGCCACCATGGGATCTCTTCATGACATATTGCATGGTTTGCAATTTTTTTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

204

Amino Acids

22.88

Weight (kDa)

6.17

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	113 - 197	3.1e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	114 - 197	4.5e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43230 AT2G43230 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350
fragaria_vesca	FvH4_4g11280 FvH4_4g11280 FvH4_4g11280
malus_domestica	MD04G1038500.v1.1 MD13G1258500.v1.1
prunus_persica	Prupe.1G189000_v2.0.a1 Prupe.1G189000_v2.0.a1
pyrus_communis	pycom13g25750
rosa_chinensis	RchiOBHm_Chr4g0407431
rosa_laevigata	RLG00000008720
rosa_multiflora	Rmu_sc0004841.1_g000042
rosa_roxburghii	Rroxscaffold_5G00352020
rosa_rugosa	Rorug04G0079700 Rorug04G0079700 Rorug04G0079800 Rorug04G0079900
rosa_samantha	Rh4AG144300 Rh4BG142200 Rh4CG150900 Rh4DG138300
rosa_wichuraiana	Rw0G014480 Rw4G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	117
Acc16I	TGCGCA	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	372
AclWI	GGATC	3 cut(s)	340, 364, 577
AcuI	CTGAAG	2 cut(s)	209, 506
AcvI	CACGTG	1 cut(s)	151
AfaI	GTAC	1 cut(s)	258
AfeI	AGCGCT	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	247, 281, 527
AjnI	CCWGG	2 cut(s)	52, 462
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	4 cut(s)	307, 401, 418, 508
AluI	AGCT	4 cut(s)	307, 401, 418, 508
Alw26I	GTCTC	3 cut(s)	6, 61, 300
AlwI	GGATC	3 cut(s)	340, 364, 577
AlwNI	CAGNNNCTG	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	437
Aor51HI	AGCGCT	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	266, 508
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspLEI	GCGC	2 cut(s)	86, 126
AsuHPI	GGTGA	2 cut(s)	244, 362
AvaI	CYCGRG	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	197, 438
BbrPI	CACGTG	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	278, 495
BccI	CCATC	2 cut(s)	203, 386
BceAI	ACGGC	2 cut(s)	9, 392
BciT130I	CCWGG	2 cut(s)	54, 464
BcoDI	GTCTC	3 cut(s)	6, 61, 300
BfaI	CTAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	267, 509
BlsI	GCNGC	2 cut(s)	268, 510
Bme1390I	CCNGG	2 cut(s)	54, 464
BmeT110I	CYCGRG	1 cut(s)	437
BmrFI	CCNGG	2 cut(s)	54, 464
BmsI	GCATC	2 cut(s)	111, 437
BpiI	GAAGAC	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	92
BsaAI	YACGTR	1 cut(s)	151
BsaJI	CCNNGG	6 cut(s)	25, 52, 197, 462, 471, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	54, 464
BseDI	CCNNGG	6 cut(s)	25, 52, 197, 462, 471, 564
BseGI	GGATG	2 cut(s)	126, 394
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	423
BseRI	GAGGAG	2 cut(s)	170, 317
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	278, 495
BsiHKCI	CYCGRG	1 cut(s)	437
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	3 cut(s)	6, 61, 300
BsmFI	GGGAC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	3 cut(s)	197, 227, 438
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	332, 345, 356, 569
Bsp19I	CCATGG	2 cut(s)	471, 564
BspCNI	CTCAG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	577
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	3 cut(s)	340, 364, 577
BspQI	GCTCTTC	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	256
BssECI	CCNNGG	6 cut(s)	25, 52, 197, 462, 471, 564
BssMI	GATC	4 cut(s)	332, 345, 356, 569
BssT1I	CCWWGG	3 cut(s)	197, 471, 564
Bst2UI	CCWGG	2 cut(s)	54, 464
Bst4CI	ACNGT	2 cut(s)	17, 521
Bst6I	CTCTTC	2 cut(s)	185, 579
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstAUI	TGTACA	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	382, 546
BstDEI	CTNAG	3 cut(s)	228, 336, 432
BstDSI	CCRYGG	3 cut(s)	25, 471, 564
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	126, 394
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 126
BstKTI	GATC	4 cut(s)	335, 348, 359, 572
BstMAI	GTCTC	3 cut(s)	6, 61, 300
BstMBI	GATC	4 cut(s)	332, 345, 356, 569
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 595
BstNI	CCWGG	2 cut(s)	54, 464
BstNSI	RCATGY	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	52, 462
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	278, 495
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	2 cut(s)	332, 569
BstYI	RGATCY	2 cut(s)	332, 569
BtgI	CCRYGG	3 cut(s)	25, 471, 564
BtsCI	GGATG	2 cut(s)	126, 394
BtsIMutI	CAGTG	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	382, 546
CaiI	CAGNNNCTG	1 cut(s)	15
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	2 cut(s)	86, 126
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	7 cut(s)	41, 173, 385, 472, 565, 578, 590
CviJI	RGCY	8 cut(s)	24, 133, 195, 307, 401, 418, 436, 508
CviKI_1	RGCY	8 cut(s)	24, 133, 195, 307, 401, 418, 436, 508
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	3 cut(s)	228, 336, 432
DpnI	GATC	4 cut(s)	334, 347, 358, 571
DpnII	GATC	4 cut(s)	332, 345, 356, 569
Eam1104I	CTCTTC	2 cut(s)	185, 579
EarI	CTCTTC	2 cut(s)	185, 579
Eco130I	CCWWGG	3 cut(s)	197, 471, 564
Eco24I	GRGCYC	2 cut(s)	197, 438
Eco47III	AGCGCT	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	209, 506
Eco72I	CACGTG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	437
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	52, 462
EcoT14I	CCWWGG	3 cut(s)	197, 471, 564
EcoT38I	GRGCYC	2 cut(s)	197, 438
ErhI	CCWWGG	3 cut(s)	197, 471, 564
FaeI	CATG	7 cut(s)	44, 176, 388, 475, 568, 581, 593
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	7 cut(s)	40, 172, 384, 471, 564, 577, 589
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	267, 509
FokI	GGATG	2 cut(s)	133, 401
FriOI	GRGCYC	2 cut(s)	197, 438
Fsp4HI	GCNGC	2 cut(s)	267, 509
FspBI	CTAG	1 cut(s)	480
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	2 cut(s)	85, 125
GluI	GCNGC	2 cut(s)	267, 509
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	87
HhaI	GCGC	2 cut(s)	86, 126
Hin1II	CATG	7 cut(s)	44, 176, 388, 475, 568, 581, 593
Hin6I	GCGC	2 cut(s)	84, 124
HinP1I	GCGC	2 cut(s)	84, 124
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	158, 369, 440
HphI	GGTGA	2 cut(s)	244, 362
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	253, 433, 459
Hpy188III	TCNNGA	5 cut(s)	118, 299, 412, 480, 578
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	347, 521
HpyCH4III	ACNGT	2 cut(s)	17, 521
HpyCH4IV	ACGT	2 cut(s)	150, 423
HpyCH4V	TGCA	4 cut(s)	380, 428, 589, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 595
HpyF3I	CTNAG	3 cut(s)	228, 336, 432
HpySE526I	ACGT	2 cut(s)	150, 423
Hsp92II	CATG	7 cut(s)	44, 176, 388, 475, 568, 581, 593
HspAI	GCGC	2 cut(s)	84, 124
Kzo9I	GATC	4 cut(s)	332, 345, 356, 569
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	8 cut(s)	39, 66, 103, 112, 200, 284, 449, 476
Lsp1109I	GCAGC	2 cut(s)	278, 495
LweI	GCATC	2 cut(s)	111, 437
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	150, 423
MaeIII	GTNAC	5 cut(s)	56, 146, 232, 339, 515
MalI	GATC	4 cut(s)	334, 347, 358, 571
MboI	GATC	4 cut(s)	332, 345, 356, 569
MboII	GAAGA	4 cut(s)	121, 202, 328, 566
MflI	RGATCY	2 cut(s)	332, 569
MhlI	GDGCHC	3 cut(s)	197, 227, 438
MluCI	AATT	2 cut(s)	325, 599
MlyI	GAGTC	3 cut(s)	167, 378, 449
MnlI	CCTC	5 cut(s)	57, 99, 148, 295, 297
MseI	TTAA	1 cut(s)	613
MslI	CAYNNNNRTG	2 cut(s)	177, 230
MspR9I	CCNGG	2 cut(s)	54, 464
MvaI	CCWGG	2 cut(s)	54, 464
MwoI	GCNNNNNNNGC	2 cut(s)	130, 595
NcoI	CCATGG	2 cut(s)	471, 564
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	4 cut(s)	332, 345, 356, 569
NlaIII	CATG	7 cut(s)	44, 176, 388, 475, 568, 581, 593
NmuCI	GTSAC	3 cut(s)	146, 232, 339
NsbI	TGCGCA	1 cut(s)	125
NspI	RCATGY	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	230
PagI	TCATGA	1 cut(s)	577
PaqCI	CACCTGC	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	268, 510
PleI	GAGTC	3 cut(s)	166, 377, 448
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
PpsI	GAGTC	3 cut(s)	166, 377, 448
Ppu21I	YACGTR	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	52, 462
PspCI	CACGTG	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	2 cut(s)	52, 462
PstNI	CAGNNNCTG	1 cut(s)	15
PsuI	RGATCY	2 cut(s)	332, 569
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	2 cut(s)	177, 230
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	613
SatI	GCNGC	2 cut(s)	267, 509
Sau3AI	GATC	4 cut(s)	332, 345, 356, 569
SchI	GAGTC	3 cut(s)	167, 378, 449
ScrFI	CCNGG	2 cut(s)	54, 464
SduI	GDGCHC	3 cut(s)	197, 227, 438
SfaNI	GCATC	2 cut(s)	111, 437
SmiMI	CAYNNNNRTG	2 cut(s)	177, 230
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	325, 599
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	52, 462
StyI	CCWWGG	3 cut(s)	197, 471, 564
TaaI	ACNGT	2 cut(s)	17, 521
TaiI	ACGT	2 cut(s)	153, 426
TasI	AATT	2 cut(s)	325, 599
TatI	WGTACW	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	613
Tru9I	TTAA	1 cut(s)	613
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	3 cut(s)	146, 232, 339
TseI	GCWGC	2 cut(s)	266, 508
Tsp45I	GTSAC	3 cut(s)	146, 232, 339
TspDTI	ATGAA	3 cut(s)	189, 195, 566
TspRI	CASTG	1 cut(s)	348
XbaI	TCTAGA	1 cut(s)	479
XceI	RCATGY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.