Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004895

Physical Location & Seq

Genomic Coordinates Forward (+)

33241833 .. 33254442

Gene Structure 12610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG150900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCGCAGGTGGCTTTGTTGTTCTTGTCACGTGGAGGAGTCTTATTCAGCACATGAAAATGAACACCTGAAGAGCCCAAGGAGTTATGATGGGAACAATAAGGGCACTAAGGTGACCACTCCTTTGAAGTCTGATGTACAAAAGGCAGCACCACCTATTGAAGTCCCTCCATTGTCTCTGGAGGAGCTGAAAGAGAAGACTGACAATTTTGGATCTAAGTCACTGATCGGTGAAGGATCATATGGGAGAGTCTACTATGCAAGCATGGATGATGGTAAAGCTGTTGCCGTCAAGAAGCTTGACGTTGCATCTGAGCCCGAGTCAAATGTTGAGTTTCTGACCCAGGTTTCCATGGTTTCTAGACTGAAGCACGACAATCTTGTTGAGCTGCTTGGTTACTGTGTTGAAGGAAGTCTGCGAGTGCTTGCGTATGAGTTTGCCACCATGGGATCTCTTCATGACATATTGCATGGCAGAAAGGGCGTTCAAGGGGCACAACCTGGTCCAACACTTGACTGGATGCAGCGTGTGAGAATTGCAGTTGATGCAGCCAGGGGGTTGGAATACTTGCATGAGAAGGTTCAACCTCCTATTATACATAGAGATATCAGATCTAGTAACGTGCTTCTCTTTGAAGATTTCAAAGCCAAGATAGCAGATTTTAATCTTTCGAATCAGGCTCCTGATATGGCTGCTCGTCTTCATTCCACTCGAGTTTTGGGAACTTTTGGTTATCATGCTCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

249

Amino Acids

27.72

Weight (kDa)

6.37

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	73 - 249	6.1e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	74 - 249	3.5e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43230 AT2G43230 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350
fragaria_vesca	FvH4_4g11280 FvH4_4g11280 FvH4_4g11280
malus_domestica	MD04G1038500.v1.1 MD13G1258500.v1.1
prunus_persica	Prupe.1G189000_v2.0.a1 Prupe.1G189000_v2.0.a1
pyrus_communis	pycom13g25750
rosa_chinensis	RchiOBHm_Chr4g0407431
rosa_laevigata	RLG00000008720
rosa_multiflora	Rmu_sc0004841.1_g000042
rosa_roxburghii	Rroxscaffold_5G00352020
rosa_rugosa	Rorug04G0079700 Rorug04G0079700 Rorug04G0079800 Rorug04G0079900
rosa_samantha	Rh4AG144300 Rh4BG142200 Rh4CG150900 Rh4DG138300
rosa_wichuraiana	Rw0G014480 Rw4G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	252
AclWI	GGATC	3 cut(s)	220, 244, 457
AcuI	CTGAAG	2 cut(s)	89, 386
AcvI	CACGTG	1 cut(s)	31
AfaI	GTAC	1 cut(s)	138
AgsI	TTSAA	7 cut(s)	127, 161, 407, 488, 584, 635, 643
AjnI	CCWGG	3 cut(s)	342, 499, 551
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	4 cut(s)	187, 281, 298, 388
AluI	AGCT	4 cut(s)	187, 281, 298, 388
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	3 cut(s)	220, 244, 457
Ama87I	CYCGRG	2 cut(s)	317, 711
ApeKI	GCWGC	5 cut(s)	146, 388, 523, 548, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	124, 242
AsuII	TTCGAA	1 cut(s)	671
AvaI	CYCGRG	2 cut(s)	317, 711
AvaII	GGWCC	1 cut(s)	503
BaeGI	GKGCMC	2 cut(s)	107, 496
BanII	GRGCYC	2 cut(s)	77, 318
BbrPI	CACGTG	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	203, 692
BbvI	GCAGC	5 cut(s)	158, 375, 535, 560, 679
BccI	CCATC	2 cut(s)	83, 266
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	3 cut(s)	344, 501, 553
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	2 cut(s)	360, 615
BglII	AGATCT	1 cut(s)	611
BisI	GCNGC	5 cut(s)	147, 389, 524, 549, 693
BlsI	GCNGC	5 cut(s)	148, 390, 525, 550, 694
Bme1390I	CCNGG	3 cut(s)	344, 501, 553
Bme18I	GGWCC	1 cut(s)	503
BmeT110I	CYCGRG	2 cut(s)	317, 711
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	681
BmrFI	CCNGG	3 cut(s)	344, 501, 553
BmsI	GCATC	3 cut(s)	317, 510, 535
BpiI	GAAGAC	2 cut(s)	203, 692
BpmI	CTGGAG	2 cut(s)	200, 726
Bpu14I	TTCGAA	1 cut(s)	671
BsaAI	YACGTR	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	663
BsaJI	CCNNGG	5 cut(s)	77, 342, 351, 444, 552
Bse1I	ACTGG	1 cut(s)	521
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	3 cut(s)	344, 501, 553
BseDI	CCNNGG	5 cut(s)	77, 342, 351, 444, 552
BseGI	GGATG	2 cut(s)	274, 525
BseJI	GATNNNNATC	1 cut(s)	663
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	2 cut(s)	50, 197
BseSI	GKGCMC	2 cut(s)	107, 496
BseXI	GCAGC	5 cut(s)	158, 375, 535, 560, 679
BsiHKCI	CYCGRG	2 cut(s)	317, 711
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	149
BsoBI	CYCGRG	2 cut(s)	317, 711
Bsp119I	TTCGAA	1 cut(s)	671
Bsp1286I	GDGCHC	4 cut(s)	77, 107, 318, 496
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	5 cut(s)	212, 225, 236, 449, 611
Bsp19I	CCATGG	2 cut(s)	351, 444
BspCNI	CTCAG	1 cut(s)	304
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	681
BspPI	GGATC	3 cut(s)	220, 244, 457
BspQI	GCTCTTC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	671
BsrGI	TGTACA	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	5 cut(s)	77, 342, 351, 444, 552
BssMI	GATC	5 cut(s)	212, 225, 236, 449, 611
BssT1I	CCWWGG	3 cut(s)	77, 351, 444
Bst2UI	CCWGG	3 cut(s)	344, 501, 553
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	2 cut(s)	65, 459
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	262, 426
BstDEI	CTNAG	3 cut(s)	108, 216, 312
BstDSI	CCRYGG	2 cut(s)	351, 444
BstEII	GGTNACC	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	274, 525
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	5 cut(s)	215, 228, 239, 452, 614
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	5 cut(s)	212, 225, 236, 449, 611
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 480, 545, 653
BstNI	CCWGG	3 cut(s)	344, 501, 553
BstPI	GGTNACC	1 cut(s)	112
BstSCI	CCNGG	3 cut(s)	342, 499, 551
BstSLI	GKGCMC	2 cut(s)	107, 496
BstV1I	GCAGC	5 cut(s)	158, 375, 535, 560, 679
BstV2I	GAAGAC	2 cut(s)	203, 692
BstX2I	RGATCY	3 cut(s)	212, 449, 611
BstXI	CCANNNNNNTGG	1 cut(s)	559
BstYI	RGATCY	3 cut(s)	212, 449, 611
BtgI	CCRYGG	2 cut(s)	351, 444
BtsCI	GGATG	2 cut(s)	274, 525
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	262, 426
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	503
CsiI	ACCWGGT	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	8 cut(s)	53, 265, 352, 445, 458, 470, 572, 737
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	3 cut(s)	108, 216, 312
DpnI	GATC	5 cut(s)	214, 227, 238, 451, 613
DpnII	GATC	5 cut(s)	212, 225, 236, 449, 611
Eam1104I	CTCTTC	2 cut(s)	65, 459
EarI	CTCTTC	2 cut(s)	65, 459
Eco130I	CCWWGG	3 cut(s)	77, 351, 444
Eco24I	GRGCYC	2 cut(s)	77, 318
Eco32I	GATATC	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	503
Eco57I	CTGAAG	2 cut(s)	89, 386
Eco72I	CACGTG	1 cut(s)	31
Eco88I	CYCGRG	2 cut(s)	317, 711
Eco91I	GGTNACC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	112
EcoRII	CCWGG	3 cut(s)	342, 499, 551
EcoRV	GATATC	1 cut(s)	607
EcoT14I	CCWWGG	3 cut(s)	77, 351, 444
EcoT38I	GRGCYC	2 cut(s)	77, 318
ErhI	CCWWGG	3 cut(s)	77, 351, 444
FaeI	CATG	8 cut(s)	56, 268, 355, 448, 461, 473, 575, 740
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	8 cut(s)	52, 264, 351, 444, 457, 469, 571, 736
FauNDI	CATATG	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	147, 389, 524, 549, 693
FokI	GGATG	2 cut(s)	281, 532
FriOI	GRGCYC	2 cut(s)	77, 318
Fsp4HI	GCNGC	5 cut(s)	147, 389, 524, 549, 693
FspBI	CTAG	2 cut(s)	360, 615
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	5 cut(s)	147, 389, 524, 549, 693
GsuI	CTGGAG	2 cut(s)	200, 726
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	8 cut(s)	56, 268, 355, 448, 461, 473, 575, 740
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	4 cut(s)	38, 249, 320, 673
HphI	GGTGA	2 cut(s)	124, 242
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	4 cut(s)	133, 313, 339, 611
Hpy188III	TCNNGA	6 cut(s)	179, 292, 360, 458, 683, 743
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	227, 401, 571
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	3 cut(s)	30, 303, 621
HpyCH4V	TGCA	7 cut(s)	260, 308, 469, 523, 539, 548, 571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 480, 545, 653
HpyF3I	CTNAG	3 cut(s)	108, 216, 312
HpySE526I	ACGT	3 cut(s)	30, 303, 621
Hsp92II	CATG	8 cut(s)	56, 268, 355, 448, 461, 473, 575, 740
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	5 cut(s)	212, 225, 236, 449, 611
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	3 cut(s)	184, 685, 745
Lsp1109I	GCAGC	5 cut(s)	158, 375, 535, 560, 679
LweI	GCATC	3 cut(s)	317, 510, 535
MabI	ACCWGGT	1 cut(s)	499
MaeI	CTAG	2 cut(s)	360, 615
MaeII	ACGT	3 cut(s)	30, 303, 621
MaeIII	GTNAC	5 cut(s)	26, 112, 219, 395, 617
MalI	GATC	5 cut(s)	214, 227, 238, 451, 613
MboI	GATC	5 cut(s)	212, 225, 236, 449, 611
MboII	GAAGA	5 cut(s)	82, 208, 446, 647, 692
MflI	RGATCY	3 cut(s)	212, 449, 611
MhlI	GDGCHC	4 cut(s)	77, 107, 318, 496
MluCI	AATT	2 cut(s)	205, 534
MlyI	GAGTC	3 cut(s)	47, 258, 329
MmeI	TCCRAC	2 cut(s)	530, 540
MnlI	CCTC	4 cut(s)	28, 175, 177, 597
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	2 cut(s)	57, 110
MspR9I	CCNGG	3 cut(s)	344, 501, 553
MvaI	CCWGG	3 cut(s)	344, 501, 553
MwoI	GCNNNNNNNGC	4 cut(s)	10, 480, 545, 653
NcoI	CCATGG	2 cut(s)	351, 444
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	5 cut(s)	212, 225, 236, 449, 611
NlaIII	CATG	8 cut(s)	56, 268, 355, 448, 461, 473, 575, 740
NlaIV	GGNNCC	1 cut(s)	681
NmuCI	GTSAC	3 cut(s)	26, 112, 219
NsbI	TGCGCA	1 cut(s)	5
NspV	TTCGAA	1 cut(s)	671
OliI	CACNNNNGTG	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	711
PagI	TCATGA	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	673
PkrI	GCNGC	5 cut(s)	148, 390, 525, 550, 694
PleI	GAGTC	3 cut(s)	46, 257, 328
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
PpsI	GAGTC	3 cut(s)	46, 257, 328
Ppu21I	YACGTR	1 cut(s)	31
Psp6I	CCWGG	3 cut(s)	342, 499, 551
PspCI	CACGTG	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	112
PspGI	CCWGG	3 cut(s)	342, 499, 551
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	1 cut(s)	503
PspXI	VCTCGAGB	1 cut(s)	711
PsuI	RGATCY	3 cut(s)	212, 449, 611
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	57, 110
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	5 cut(s)	147, 389, 524, 549, 693
Sau3AI	GATC	5 cut(s)	212, 225, 236, 449, 611
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	3 cut(s)	47, 258, 329
ScrFI	CCNGG	3 cut(s)	344, 501, 553
SduI	GDGCHC	4 cut(s)	77, 107, 318, 496
SexAI	ACCWGGT	1 cut(s)	499
SfaNI	GCATC	3 cut(s)	317, 510, 535
Sfr274I	CTCGAG	1 cut(s)	711
SfuI	TTCGAA	1 cut(s)	671
SinI	GGWCC	1 cut(s)	503
SlaI	CTCGAG	1 cut(s)	711
SmiMI	CAYNNNNRTG	2 cut(s)	57, 110
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	2 cut(s)	205, 534
SspMI	CTAG	2 cut(s)	360, 615
StyD4I	CCNGG	3 cut(s)	342, 499, 551
StyI	CCWWGG	3 cut(s)	77, 351, 444
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	3 cut(s)	33, 306, 624
TaqI	TCGA	2 cut(s)	671, 712
TasI	AATT	2 cut(s)	205, 534
TatI	WGTACW	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	3 cut(s)	26, 112, 219
TseI	GCWGC	5 cut(s)	146, 388, 523, 548, 692
Tsp45I	GTSAC	3 cut(s)	26, 112, 219
TspDTI	ATGAA	4 cut(s)	69, 75, 446, 692
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	503
XbaI	TCTAGA	1 cut(s)	359
XcmI	CCANNNNNNNNNTGG	2 cut(s)	513, 715
XhoI	CTCGAG	1 cut(s)	711
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	360, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.