Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004895

Physical Location & Seq

Genomic Coordinates Forward (+)

25241376 .. 25250442

Gene Structure 9067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGATGTCAACATGGTTTCCCTTGGTCAGACTATCTTGGATGGAATCAAGAGTGTGGATGCAGGGAACAATAAGGGCACTAAGGTGTCCACTCCTTTGAAGTCTGATGTACAAAAGGCAGCACCACCTATTGAAGTCCCTCCATTGTCTCTGGAGGAGCTGAAAGAGAAGACTGACAATTTTGGATCTAAGTCACTGGTCGGCGAAGGATCATATGGGAGAGTATACTATGCAAGCATGGATGATGGTAAAGCTGTTGCCGTCAAGAAGCTTGACGTTGCATCTGAGCCCGAGTCAAATGTTGAGTTTCTGACCCAGGTTTCCATGGTTTCTAGACTGAAGCACGACAATCTTGTTGAGCTGCTTGGTTACTGTGTTGAAGGAAGTCTGCGAGTGCTTGCGTATGAGTTTGCCACCATGGGATCTCTGCATGACATATTGCATGGTAGAAAGGGCGTTCAAGGGGCGCAACCTGGTCCAACACTTGACTGGATGCAGCGTGTGAGAATTGCAGTTGATGCAGCCAGGGGGTTGGAATACTTGCATGAGAAGGTTCAACCTCCTATTATACATAGAGATATCAGATCTAGTAACGTGCTTCTCTTTGAAGATTTCAAAGCCAAGATAGCAGATTTTAATCTTTCAAATCAGGCTCCTGATATGGCTGCTCGTCTTCATTCCACTCGAGTTTTGGGAACTTTTGGTTATCATGCTCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

240

Amino Acids

26.25

Weight (kDa)

5.99

Isoelectric Point (pI)

22.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	64 - 240	1.2e-28	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 240	5.6e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43230 AT2G43230 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350
fragaria_vesca	FvH4_4g11280 FvH4_4g11280 FvH4_4g11280
malus_domestica	MD04G1038500.v1.1 MD13G1258500.v1.1
prunus_persica	Prupe.1G189000_v2.0.a1 Prupe.1G189000_v2.0.a1
pyrus_communis	pycom13g25750
rosa_chinensis	RchiOBHm_Chr4g0407431
rosa_laevigata	RLG00000008720
rosa_multiflora	Rmu_sc0004841.1_g000042
rosa_roxburghii	Rroxscaffold_5G00352020
rosa_rugosa	Rorug04G0079700 Rorug04G0079700 Rorug04G0079800 Rorug04G0079900
rosa_samantha	Rh4AG144300 Rh4BG142200 Rh4CG150900 Rh4DG138300
rosa_wichuraiana	Rw0G014480 Rw4G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AclWI	GGATC	3 cut(s)	193, 217, 430
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	111
AgsI	TTSAA	8 cut(s)	100, 134, 380, 461, 557, 608, 616, 645
AjnI	CCWGG	3 cut(s)	315, 472, 524
AleI	CACNNNNGTG	1 cut(s)	83
AluBI	AGCT	4 cut(s)	160, 254, 271, 361
AluI	AGCT	4 cut(s)	160, 254, 271, 361
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	3 cut(s)	193, 217, 430
Ama87I	CYCGRG	2 cut(s)	290, 684
ApeKI	GCWGC	5 cut(s)	119, 361, 496, 521, 665
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	476
AvaI	CYCGRG	2 cut(s)	290, 684
AvaII	GGWCC	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	2 cut(s)	176, 665
BbvI	GCAGC	5 cut(s)	131, 348, 508, 533, 652
BccI	CCATC	2 cut(s)	35, 239
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	3 cut(s)	317, 474, 526
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	2 cut(s)	333, 588
BglII	AGATCT	1 cut(s)	584
BisI	GCNGC	5 cut(s)	120, 362, 497, 522, 666
BlsI	GCNGC	5 cut(s)	121, 363, 498, 523, 667
Bme1390I	CCNGG	3 cut(s)	317, 474, 526
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	2 cut(s)	290, 684
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	654
BmrFI	CCNGG	3 cut(s)	317, 474, 526
BmsI	GCATC	4 cut(s)	49, 290, 483, 508
BpiI	GAAGAC	2 cut(s)	176, 665
BpmI	CTGGAG	2 cut(s)	173, 699
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	5 cut(s)	22, 315, 324, 417, 525
Bse1I	ACTGG	2 cut(s)	201, 494
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	3 cut(s)	317, 474, 526
BseDI	CCNNGG	5 cut(s)	22, 315, 324, 417, 525
BseGI	GGATG	5 cut(s)	10, 46, 64, 247, 498
BseJI	GATNNNNATC	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	201, 494
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	5 cut(s)	131, 348, 508, 533, 652
BsiHKCI	CYCGRG	2 cut(s)	290, 684
BslFI	GGGAC	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	122
BsoBI	CYCGRG	2 cut(s)	290, 684
Bsp1286I	GDGCHC	2 cut(s)	80, 291
Bsp1407I	TGTACA	1 cut(s)	109
Bsp143I	GATC	4 cut(s)	185, 209, 422, 584
Bsp19I	CCATGG	2 cut(s)	324, 417
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	654
BspPI	GGATC	3 cut(s)	193, 217, 430
BsrGI	TGTACA	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	201, 494
BssECI	CCNNGG	5 cut(s)	22, 315, 324, 417, 525
BssMI	GATC	4 cut(s)	185, 209, 422, 584
BssNAI	GTATAC	1 cut(s)	226
BssT1I	CCWWGG	3 cut(s)	22, 324, 417
Bst1107I	GTATAC	1 cut(s)	226
Bst2UI	CCWGG	3 cut(s)	317, 474, 526
Bst4CI	ACNGT	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstAUI	TGTACA	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	235, 399
BstDEI	CTNAG	3 cut(s)	81, 189, 285
BstDSI	CCRYGG	2 cut(s)	324, 417
BstF5I	GGATG	5 cut(s)	10, 46, 64, 247, 498
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	4 cut(s)	188, 212, 425, 587
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	4 cut(s)	185, 209, 422, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 626
BstNI	CCWGG	3 cut(s)	317, 474, 526
BstSCI	CCNGG	3 cut(s)	315, 472, 524
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	5 cut(s)	131, 348, 508, 533, 652
BstV2I	GAAGAC	2 cut(s)	176, 665
BstX2I	RGATCY	3 cut(s)	185, 422, 584
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	3 cut(s)	185, 422, 584
BstZ17I	GTATAC	1 cut(s)	226
BtgI	CCRYGG	2 cut(s)	324, 417
BtsCI	GGATG	5 cut(s)	10, 46, 64, 247, 498
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	235, 399
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	476
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	8 cut(s)	13, 238, 325, 418, 431, 443, 545, 710
CviJI	RGCY	9 cut(s)	160, 254, 271, 289, 361, 524, 620, 653, 665
CviKI_1	RGCY	9 cut(s)	160, 254, 271, 289, 361, 524, 620, 653, 665
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	3 cut(s)	81, 189, 285
DpnI	GATC	4 cut(s)	187, 211, 424, 586
DpnII	GATC	4 cut(s)	185, 209, 422, 584
Eco130I	CCWWGG	3 cut(s)	22, 324, 417
Eco24I	GRGCYC	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	359
Eco88I	CYCGRG	2 cut(s)	290, 684
EcoRII	CCWGG	3 cut(s)	315, 472, 524
EcoRV	GATATC	1 cut(s)	580
EcoT14I	CCWWGG	3 cut(s)	22, 324, 417
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	3 cut(s)	22, 324, 417
FaeI	CATG	8 cut(s)	16, 241, 328, 421, 434, 446, 548, 713
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	8 cut(s)	12, 237, 324, 417, 430, 442, 544, 709
FauNDI	CATATG	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	5 cut(s)	120, 362, 497, 522, 666
FokI	GGATG	5 cut(s)	17, 53, 71, 254, 505
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	5 cut(s)	120, 362, 497, 522, 666
FspBI	CTAG	2 cut(s)	333, 588
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	5 cut(s)	120, 362, 497, 522, 666
GsuI	CTGGAG	2 cut(s)	173, 699
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	8 cut(s)	16, 241, 328, 421, 434, 446, 548, 713
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	45, 293
Hpy166II	GTNNAC	3 cut(s)	10, 90, 226
Hpy188I	TCNGA	5 cut(s)	30, 106, 286, 312, 584
Hpy188III	TCNNGA	6 cut(s)	49, 152, 265, 333, 656, 716
Hpy8I	GTNNAC	3 cut(s)	10, 90, 226
HpyAV	CCTTC	3 cut(s)	200, 374, 544
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	2 cut(s)	276, 594
HpyCH4V	TGCA	9 cut(s)	62, 233, 281, 430, 442, 496, 512, 521, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 626
HpyF3I	CTNAG	3 cut(s)	81, 189, 285
HpySE526I	ACGT	2 cut(s)	276, 594
Hsp92II	CATG	8 cut(s)	16, 241, 328, 421, 434, 446, 548, 713
HspAI	GCGC	1 cut(s)	467
Kzo9I	GATC	4 cut(s)	185, 209, 422, 584
LmnI	GCTCC	3 cut(s)	157, 658, 718
Lsp1109I	GCAGC	5 cut(s)	131, 348, 508, 533, 652
LweI	GCATC	4 cut(s)	49, 290, 483, 508
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	2 cut(s)	333, 588
MaeII	ACGT	2 cut(s)	276, 594
MaeIII	GTNAC	3 cut(s)	192, 368, 590
MalI	GATC	4 cut(s)	187, 211, 424, 586
MboI	GATC	4 cut(s)	185, 209, 422, 584
MboII	GAAGA	3 cut(s)	181, 620, 665
MflI	RGATCY	3 cut(s)	185, 422, 584
MhlI	GDGCHC	2 cut(s)	80, 291
MluCI	AATT	2 cut(s)	178, 507
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	503, 513
MnlI	CCTC	3 cut(s)	148, 150, 570
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	83
MspR9I	CCNGG	3 cut(s)	317, 474, 526
MvaI	CCWGG	3 cut(s)	317, 474, 526
MwoI	GCNNNNNNNGC	2 cut(s)	518, 626
NcoI	CCATGG	2 cut(s)	324, 417
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	4 cut(s)	185, 209, 422, 584
NlaIII	CATG	8 cut(s)	16, 241, 328, 421, 434, 446, 548, 713
NlaIV	GGNNCC	1 cut(s)	654
NmuCI	GTSAC	1 cut(s)	192
OliI	CACNNNNGTG	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	684
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	5 cut(s)	121, 363, 498, 523, 667
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	3 cut(s)	315, 472, 524
PspGI	CCWGG	3 cut(s)	315, 472, 524
PspN4I	GGNNCC	1 cut(s)	654
PspPI	GGNCC	1 cut(s)	476
PspXI	VCTCGAGB	1 cut(s)	684
PsuI	RGATCY	3 cut(s)	185, 422, 584
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	5 cut(s)	120, 362, 497, 522, 666
Sau3AI	GATC	4 cut(s)	185, 209, 422, 584
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	317, 474, 526
SduI	GDGCHC	2 cut(s)	80, 291
SexAI	ACCWGGT	1 cut(s)	472
SfaNI	GCATC	4 cut(s)	49, 290, 483, 508
Sfr274I	CTCGAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
Sse9I	AATT	2 cut(s)	178, 507
SspMI	CTAG	2 cut(s)	333, 588
StyD4I	CCNGG	3 cut(s)	315, 472, 524
StyI	CCWWGG	3 cut(s)	22, 324, 417
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	2 cut(s)	279, 597
TaqI	TCGA	1 cut(s)	685
TasI	AATT	2 cut(s)	178, 507
TatI	WGTACW	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	5 cut(s)	119, 361, 496, 521, 665
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	665
TspRI	CASTG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	476
XbaI	TCTAGA	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	2 cut(s)	486, 688
XhoI	CTCGAG	1 cut(s)	684
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	333, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.