MD04G1038500.v1.1
ERF Family

Belongs to the protein kinase superfamily. Tyr protein kinase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
4257056 .. 4261825
4770 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1038500.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGCGCAGGTGGCTCTGTTGTGCTTGTCACGTCGAAGAGTCTTATCCATCAAACGAAAATGAACGCCTGAAGAGCCCAAATCACTATGGAGATGGGAACCAAAAGGGATCTAAGGTGTCAGCTCCTGTAAAATCTGAAGTACAGAAGGCTGCTCCACCTATTGAAGTGCCTCAATTATCTGTGGAGGAGCTGAAAGAGAAGACTGACAATTTTGGATCCAAATCATTGATTGGTGAAGGTTCATATGGGAGAGTATATTATGCAAGCTTGAACGATGGTAAAGCTGTGGCAGTGAAGAAGCTTGACGTTGCATCTGAACCTGAGACAAATGTTGAGTTTTTGACCCAGGTTTCCATGGTATCAAGACTGAAGCACGAAAATCTTGTTGAGTTGCTTGGTTACTGTGTTGATGGAAATCTGCGCGTTCTGGCTTATGAGTTTGCAACCATGGGATCTCTACATGACATATTACATGGTAGAAAGGGAGTTCAGGGGGCTCAACCTGGTCCTACACTAGACTGGATGCAGCGGGTAAGAATTGCAGTTGAGGCAGCTAGGGGGTTGGAATACTTACACGAGAAGGTTCAACCAGCTATCATACACAGAGATATAAGATCTAGCAACGTGCTTCTCTTTGAAGATTTCAAAGCCAAGATAGCAGATTTTAATCTGTCGAATCAGGCTCCTGATATGGCTGCTCGTCTTCATTCTACTCGAGTTTTGGGAACATTTGGTTATCATGCCCCAGAGTATGCAATGACAGGCCAATTGACACAGAAGAGTGATGTGTACAGCTTTGGAGTGGTTCTACTAGAACTTCTGACCGGGAGGAAACCTGTTGATCATACAATGCCTCGTGGACAGCAGAGTCTTGTTACTTGGGCTACTCCAAGATTGAGCGAAGACAAAGTTAAACAATGTGTTGATCCAAAGCTAAAGGATTATCCTGCTAAGGGGGTCGCGAAGCTGGCAGCCGTTGCAGCACTGTGTGTGCAATATGAATCTGAATTCCGGCCAAATATGAGCATTGTTGTGAAGGCTCTTCAACCGCTTCTGAAGCCACCAGCAGCAGCTCCGGAGTCTTGA

Protein Analysis

362

Amino Acids

39.89

Weight (kDa)

8.1

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 74 - 286 1.7e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 75 - 348 6.7e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 867
Acc16I TGCGCA 1 cut(s) 5
AccII CGCG 2 cut(s) 423, 962
AccIII TCCGGA 1 cut(s) 1075
AciI CCGC 2 cut(s) 529, 1049
AclWI GGATC 5 cut(s) 115, 210, 223, 460, 920
AcoI YGGCCR 1 cut(s) 1013
AcsI RAATTY 1 cut(s) 1007
AcuI CTGAAG 4 cut(s) 89, 156, 389, 1076
AdeI CACNNNGTG 1 cut(s) 989
AfaI GTAC 2 cut(s) 141, 791
AfiI CCNNNNNNNGG 1 cut(s) 953
AgsI TTSAA 6 cut(s) 164, 271, 587, 638, 646, 1046
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 2 cut(s) 345, 502
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 5 cut(s) 115, 210, 223, 460, 920
AlwNI CAGNNNCTG 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 714
Aor13HI TCCGGA 1 cut(s) 1075
AoxI GGCC 2 cut(s) 763, 1013
ApeKI GCWGC 8 cut(s) 149, 526, 551, 695, 971, 980, 1067, 1070
ApoI RAATTY 1 cut(s) 1007
AspLEI GCGC 2 cut(s) 6, 423
AspS9I GGNCC 1 cut(s) 506
AsuC2I CCSGG 1 cut(s) 826
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 714
AvaII GGWCC 1 cut(s) 506
BamHI GGATCC 1 cut(s) 215
BanII GRGCYC 2 cut(s) 77, 499
BauI CACGAG 2 cut(s) 575, 855
BbsI GAAGAC 3 cut(s) 206, 695, 909
BbvI GCAGC 8 cut(s) 136, 538, 563, 682, 983, 992, 1079, 1082
BccI CCATC 4 cut(s) 55, 86, 269, 404
BceAI ACGGC 1 cut(s) 959
BciT130I CCWGG 2 cut(s) 347, 504
BclI TGATCA 1 cut(s) 841
BcnI CCSGG 1 cut(s) 826
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 4 cut(s) 515, 555, 618, 812
BglII AGATCT 1 cut(s) 614
BisI GCNGC 8 cut(s) 150, 527, 552, 696, 972, 981, 1068, 1071
BlsI GCNGC 8 cut(s) 151, 528, 553, 697, 973, 982, 1069, 1072
Bme1390I CCNGG 3 cut(s) 347, 504, 826
Bme18I GGWCC 1 cut(s) 506
BmeT110I CYCGRG 1 cut(s) 714
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 3 cut(s) 98, 217, 684
BmrFI CCNGG 3 cut(s) 347, 504, 826
BmsI GCATC 2 cut(s) 320, 513
BpiI GAAGAC 3 cut(s) 206, 695, 909
Bpu10I CCTNAGC 1 cut(s) 951
BpuMI CCSGG 1 cut(s) 826
BsaBI GATNNNNATC 3 cut(s) 220, 414, 666
BsaJI CCNNGG 3 cut(s) 345, 354, 447
BsaWI WCCGGW 1 cut(s) 1075
Bsc4I CCNNNNNNNGG 1 cut(s) 953
Bse1I ACTGG 1 cut(s) 524
Bse3DI GCAATG 1 cut(s) 762
Bse8I GATNNNNATC 3 cut(s) 220, 414, 666
BseAI TCCGGA 1 cut(s) 1075
BseBI CCWGG 2 cut(s) 347, 504
BseDI CCNNGG 3 cut(s) 345, 354, 447
BseGI GGATG 1 cut(s) 528
BseJI GATNNNNATC 3 cut(s) 220, 414, 666
BseLI CCNNNNNNNGG 1 cut(s) 953
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 524
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 8 cut(s) 136, 538, 563, 682, 983, 992, 1079, 1082
Bsh1236I CGCG 2 cut(s) 423, 962
BshFI GGCC 2 cut(s) 765, 1015
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 3 cut(s) 825, 1012, 1076
BslI CCNNNNNNNGG 1 cut(s) 953
BsmAI GTCTC 1 cut(s) 317
BsnI GGCC 2 cut(s) 765, 1015
BsoBI CYCGRG 1 cut(s) 714
Bsp1286I GDGCHC 2 cut(s) 77, 499
Bsp13I TCCGGA 1 cut(s) 1075
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 6 cut(s) 107, 215, 452, 614, 841, 925
Bsp19I CCATGG 2 cut(s) 354, 447
Bsp68I TCGCGA 1 cut(s) 962
BspACI CCGC 2 cut(s) 529, 1049
BspANI GGCC 2 cut(s) 765, 1015
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 1075
BspFNI CGCG 2 cut(s) 423, 962
BspLI GGNNCC 3 cut(s) 98, 217, 684
BspPI GGATC 5 cut(s) 115, 210, 223, 460, 920
BspQI GCTCTTC 2 cut(s) 65, 1047
BsrDI GCAATG 1 cut(s) 762
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 1 cut(s) 524
BssECI CCNNGG 3 cut(s) 345, 354, 447
BssMI GATC 6 cut(s) 107, 215, 452, 614, 841, 925
BssSI CACGAG 2 cut(s) 575, 855
BssT1I CCWWGG 2 cut(s) 354, 447
Bst2BI CACGAG 2 cut(s) 575, 855
Bst2UI CCWGG 2 cut(s) 347, 504
Bst4CI ACNGT 2 cut(s) 404, 987
Bst6I CTCTTC 4 cut(s) 30, 65, 773, 1047
BstAPI GCANNNNNTGC 1 cut(s) 977
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 2 cut(s) 265, 969
BstDEI CTNAG 3 cut(s) 111, 321, 951
BstDSI CCRYGG 2 cut(s) 354, 447
BstF5I GGATG 1 cut(s) 528
BstFNI CGCG 2 cut(s) 423, 962
BstHHI GCGC 2 cut(s) 6, 423
BstKTI GATC 6 cut(s) 110, 218, 455, 617, 844, 928
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 6 cut(s) 107, 215, 452, 614, 841, 925
BstMWI GCNNNNNNNGC 8 cut(s) 10, 72, 548, 656, 968, 977, 980, 1057
BstNI CCWGG 2 cut(s) 347, 504
BstSCI CCNGG 3 cut(s) 345, 502, 824
BstUI CGCG 2 cut(s) 423, 962
BstV1I GCAGC 8 cut(s) 136, 538, 563, 682, 983, 992, 1079, 1082
BstV2I GAAGAC 3 cut(s) 206, 695, 909
BstX2I RGATCY 4 cut(s) 107, 215, 452, 614
BstYI RGATCY 4 cut(s) 107, 215, 452, 614
BsuRI GGCC 2 cut(s) 765, 1015
BtgI CCRYGG 2 cut(s) 354, 447
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 528
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 297, 983
BtuMI TCGCGA 1 cut(s) 962
Cac8I GCNNGC 2 cut(s) 265, 969
CaiI CAGNNNCTG 1 cut(s) 125
CfoI GCGC 2 cut(s) 6, 423
Cfr13I GGNCC 1 cut(s) 506
CsiI ACCWGGT 1 cut(s) 502
Csp6I GTAC 2 cut(s) 140, 790
CviAII CATG 5 cut(s) 355, 448, 461, 473, 740
CviQI GTAC 2 cut(s) 140, 790
DdeI CTNAG 3 cut(s) 111, 321, 951
DpnI GATC 6 cut(s) 109, 217, 454, 616, 843, 927
DpnII GATC 6 cut(s) 107, 215, 452, 614, 841, 925
DraIII CACNNNGTG 1 cut(s) 989
DrdI GACNNNNNNGTC 1 cut(s) 867
DseDI GACNNNNNNGTC 1 cut(s) 867
EaeI YGGCCR 1 cut(s) 1013
Eam1104I CTCTTC 4 cut(s) 30, 65, 773, 1047
EarI CTCTTC 4 cut(s) 30, 65, 773, 1047
Eco130I CCWWGG 2 cut(s) 354, 447
Eco24I GRGCYC 2 cut(s) 77, 499
Eco47I GGWCC 1 cut(s) 506
Eco57I CTGAAG 4 cut(s) 89, 156, 389, 1076
Eco88I CYCGRG 1 cut(s) 714
EcoRI GAATTC 1 cut(s) 1007
EcoRII CCWGG 2 cut(s) 345, 502
EcoT14I CCWWGG 2 cut(s) 354, 447
EcoT38I GRGCYC 2 cut(s) 77, 499
ErhI CCWWGG 2 cut(s) 354, 447
FaeI CATG 5 cut(s) 358, 451, 464, 476, 743
FatI CATG 5 cut(s) 354, 447, 460, 472, 739
FauI CCCGC 1 cut(s) 522
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 841
Fnu4HI GCNGC 8 cut(s) 150, 527, 552, 696, 972, 981, 1068, 1071
FokI GGATG 1 cut(s) 535
FriOI GRGCYC 2 cut(s) 77, 499
Fsp4HI GCNGC 8 cut(s) 150, 527, 552, 696, 972, 981, 1068, 1071
FspBI CTAG 4 cut(s) 515, 555, 618, 812
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 422
GluI GCNGC 8 cut(s) 150, 527, 552, 696, 972, 981, 1068, 1071
HaeIII GGCC 2 cut(s) 765, 1015
HapII CCGG 3 cut(s) 825, 1012, 1076
HhaI GCGC 2 cut(s) 6, 423
Hin1II CATG 5 cut(s) 358, 451, 464, 476, 743
Hin6I GCGC 2 cut(s) 4, 421
HinP1I GCGC 2 cut(s) 4, 421
HindIII AAGCTT 2 cut(s) 265, 299
HinfI GANTC 5 cut(s) 38, 676, 868, 1001, 1079
HpaII CCGG 3 cut(s) 825, 1012, 1076
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 790, 860
Hpy188I TCNGA 5 cut(s) 136, 316, 822, 1006, 1056
Hpy188III TCNNGA 5 cut(s) 363, 686, 961, 1076, 1083
Hpy8I GTNNAC 2 cut(s) 790, 860
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 4 cut(s) 139, 230, 574, 1030
HpyCH4III ACNGT 2 cut(s) 404, 987
HpyCH4IV ACGT 3 cut(s) 30, 306, 624
HpyCH4V TGCA 8 cut(s) 263, 311, 443, 526, 542, 755, 980, 994
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 72, 548, 656, 968, 977, 980, 1057
HpyF3I CTNAG 3 cut(s) 111, 321, 951
HpySE526I ACGT 3 cut(s) 30, 306, 624
Hsp92II CATG 5 cut(s) 358, 451, 464, 476, 743
HspAI GCGC 2 cut(s) 4, 421
Kpn2I TCCGGA 1 cut(s) 1075
Ksp22I TGATCA 1 cut(s) 841
Kzo9I GATC 6 cut(s) 107, 215, 452, 614, 841, 925
LguI GCTCTTC 2 cut(s) 65, 1047
LmnI GCTCC 5 cut(s) 127, 157, 187, 688, 1078
Lsp1109I GCAGC 8 cut(s) 136, 538, 563, 682, 983, 992, 1079, 1082
LweI GCATC 2 cut(s) 320, 513
MabI ACCWGGT 1 cut(s) 502
MaeI CTAG 4 cut(s) 515, 555, 618, 812
MaeII ACGT 3 cut(s) 30, 306, 624
MaeIII GTNAC 3 cut(s) 26, 398, 874
MalI GATC 6 cut(s) 109, 217, 454, 616, 843, 927
MboI GATC 6 cut(s) 107, 215, 452, 614, 841, 925
MboII GAAGA 9 cut(s) 47, 82, 211, 307, 650, 695, 790, 914, 1034
MfeI CAATTG 1 cut(s) 767
MflI RGATCY 4 cut(s) 107, 215, 452, 614
MhlI GDGCHC 2 cut(s) 77, 499
MluCI AATT 5 cut(s) 173, 208, 537, 767, 1007
MlyI GAGTC 2 cut(s) 47, 877
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 5 cut(s) 178, 180, 541, 822, 864
MroI TCCGGA 1 cut(s) 1075
MseI TTAA 2 cut(s) 666, 912
MslI CAYNNNNRTG 1 cut(s) 1031
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 3 cut(s) 825, 1012, 1076
MspR9I CCNGG 3 cut(s) 347, 504, 826
MunI CAATTG 1 cut(s) 767
MvaI CCWGG 2 cut(s) 347, 504
MvnI CGCG 2 cut(s) 423, 962
MwoI GCNNNNNNNGC 8 cut(s) 10, 72, 548, 656, 968, 977, 980, 1057
NciI CCSGG 1 cut(s) 826
NcoI CCATGG 2 cut(s) 354, 447
NdeI CATATG 1 cut(s) 244
NdeII GATC 6 cut(s) 107, 215, 452, 614, 841, 925
NlaIII CATG 5 cut(s) 358, 451, 464, 476, 743
NlaIV GGNNCC 3 cut(s) 98, 217, 684
NmuCI GTSAC 1 cut(s) 26
NruI TCGCGA 1 cut(s) 962
NsbI TGCGCA 1 cut(s) 5
PaeR7I CTCGAG 1 cut(s) 714
PciSI GCTCTTC 2 cut(s) 65, 1047
PfeI GAWTC 2 cut(s) 676, 1001
PkrI GCNGC 8 cut(s) 151, 528, 553, 697, 973, 982, 1069, 1072
PleI GAGTC 2 cut(s) 46, 876
PpsI GAGTC 2 cut(s) 46, 876
Psp6I CCWGG 2 cut(s) 345, 502
PspGI CCWGG 2 cut(s) 345, 502
PspN4I GGNNCC 3 cut(s) 98, 217, 684
PspPI GGNCC 1 cut(s) 506
PspXI VCTCGAGB 1 cut(s) 714
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 4 cut(s) 107, 215, 452, 614
RruI TCGCGA 1 cut(s) 962
RsaI GTAC 2 cut(s) 141, 791
RsaNI GTAC 2 cut(s) 140, 790
RseI CAYNNNNRTG 1 cut(s) 1031
SapI GCTCTTC 2 cut(s) 65, 1047
SaqAI TTAA 2 cut(s) 666, 912
SatI GCNGC 8 cut(s) 150, 527, 552, 696, 972, 981, 1068, 1071
Sau3AI GATC 6 cut(s) 107, 215, 452, 614, 841, 925
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 2 cut(s) 47, 877
ScrFI CCNGG 3 cut(s) 347, 504, 826
SduI GDGCHC 2 cut(s) 77, 499
SexAI ACCWGGT 1 cut(s) 502
SfaNI GCATC 2 cut(s) 320, 513
Sfr274I CTCGAG 1 cut(s) 714
SinI GGWCC 1 cut(s) 506
SlaI CTCGAG 1 cut(s) 714
SmiMI CAYNNNNRTG 1 cut(s) 1031
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
Sse9I AATT 5 cut(s) 173, 208, 537, 767, 1007
SsiI CCGC 2 cut(s) 529, 1049
SspMI CTAG 4 cut(s) 515, 555, 618, 812
StyD4I CCNGG 3 cut(s) 345, 502, 824
StyI CCWWGG 2 cut(s) 354, 447
TaaI ACNGT 2 cut(s) 404, 987
TaiI ACGT 3 cut(s) 33, 309, 627
TaqI TCGA 3 cut(s) 33, 674, 715
TasI AATT 5 cut(s) 173, 208, 537, 767, 1007
TatI WGTACW 2 cut(s) 139, 789
TfiI GAWTC 2 cut(s) 676, 1001
Tru1I TTAA 2 cut(s) 666, 912
Tru9I TTAA 2 cut(s) 666, 912
TscAI CASTG 2 cut(s) 297, 990
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 8 cut(s) 149, 526, 551, 695, 971, 980, 1067, 1070
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 4 cut(s) 75, 231, 695, 1014
TspRI CASTG 2 cut(s) 297, 990
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 1 cut(s) 1007
XhoI CTCGAG 1 cut(s) 714
XspI CTAG 4 cut(s) 515, 555, 618, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.