Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004895

Physical Location & Seq

Genomic Coordinates Reverse (-)

12201142 .. 12201708

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0079800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGATTTACCACCTTTCACCTTGGCTGGGCAGATCTTCGACTCATCGTACGAGGACTTGACGTGGTCAAACCATCAAGTTGGTGATGATTTACCCCCCATAACCATGGCTGGGCCGATCTTGGGCTCATCGTACGAGGATGTGATGTGGTCAAACCAAAAAGTTGGTGATAAGGGAGGATTGGATGGTGAAAACTCATGTCCCATATGTGGTCGTGCAGTCTTTGGGGGCATTAATGCTCTCTATATTCATTACTCAGACTCACACTGCTTACAAGACGAGGTCATGACTTGTCAAATGCCTGAAGTAAATCCTCTACCTCAAAATCCGACTCCCATTCTTCCTCTTCCAAATCCCTCCTCACATATACTCGATCAAGATAACCAAGCACCTCAGTTTCCTCAAGTCGAGGATCAATGTTTGACTACTGGTTATGCAGCATGCAGCTACGATATCATGGTCTCAGGTGAAAATGAAAAGAGGTTTCAAAAGAAAGAAAACTCGATCGACGACTATAAAGACGATCAAGGGCCAGGGACGCACTCGACGAGTGATGACTCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

188

Amino Acids

20.63

Weight (kDa)

4.15

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43230 AT2G43230 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350
fragaria_vesca	FvH4_4g11280 FvH4_4g11280 FvH4_4g11280
malus_domestica	MD04G1038500.v1.1 MD13G1258500.v1.1
prunus_persica	Prupe.1G189000_v2.0.a1 Prupe.1G189000_v2.0.a1
pyrus_communis	pycom13g25750
rosa_chinensis	RchiOBHm_Chr4g0407431
rosa_laevigata	RLG00000008720
rosa_multiflora	Rmu_sc0004841.1_g000042
rosa_roxburghii	Rroxscaffold_5G00352020
rosa_rugosa	Rorug04G0079700 Rorug04G0079700 Rorug04G0079800 Rorug04G0079900
rosa_samantha	Rh4AG144300 Rh4BG142200 Rh4CG150900 Rh4DG138300
rosa_wichuraiana	Rw0G014480 Rw4G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	50, 134
AfiI	CCNNNNNNNGG	4 cut(s)	27, 111, 122, 209
AgsI	TTSAA	1 cut(s)	488
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	1 cut(s)	447
AluI	AGCT	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	2 cut(s)	113, 530
ApeKI	GCWGC	2 cut(s)	437, 444
AseI	ATTAAT	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	113, 530
AsuHPI	GGTGA	5 cut(s)	10, 95, 179, 200, 479
BanII	GRGCYC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	449, 456
BccI	CCATC	2 cut(s)	81, 179
BciT130I	CCWGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	466
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	2 cut(s)	438, 445
BlsI	GCNGC	2 cut(s)	439, 446
Bme1390I	CCNGG	1 cut(s)	534
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	113, 530
BmrFI	CCNGG	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	3 cut(s)	21, 105, 533
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 111, 122, 209
Bse1I	ACTGG	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	3 cut(s)	21, 105, 533
BseGI	GGATG	2 cut(s)	145, 190
BseLI	CCNNNNNNNGG	4 cut(s)	27, 111, 122, 209
BseMII	CTCAG	3 cut(s)	270, 407, 477
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	449, 456
BseYI	CCCAGC	2 cut(s)	26, 110
BsgI	GTGCAG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	115, 532
BsiEI	CGRYCG	1 cut(s)	507
BsiWI	CGTACG	2 cut(s)	48, 132
BslFI	GGGAC	2 cut(s)	186, 550
BslI	CCNNNNNNNGG	4 cut(s)	27, 111, 122, 209
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	186, 550
BsnI	GGCC	2 cut(s)	115, 532
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	6 cut(s)	33, 117, 373, 412, 504, 523
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	2 cut(s)	115, 532
BspCNI	CTCAG	3 cut(s)	269, 406, 476
BspHI	TCATGA	1 cut(s)	285
BspPI	GGATC	1 cut(s)	420
BspTNI	GGTCTC	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	21, 105, 533
BssMI	GATC	6 cut(s)	33, 117, 373, 412, 504, 523
BssT1I	CCWWGG	2 cut(s)	21, 105
Bst2UI	CCWGG	1 cut(s)	534
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	3 cut(s)	256, 393, 463
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	145, 190
BstKTI	GATC	6 cut(s)	36, 120, 376, 415, 507, 526
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	6 cut(s)	33, 117, 373, 412, 504, 523
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	1 cut(s)	538
BstNI	CCWGG	1 cut(s)	534
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	532
BstV1I	GCAGC	2 cut(s)	449, 456
BstX2I	RGATCY	1 cut(s)	33
BstXI	CCANNNNNNTGG	3 cut(s)	80, 106, 164
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	115, 532
BtgI	CCRYGG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	145, 190
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	442
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	113, 530
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	49, 133
CviAII	CATG	5 cut(s)	106, 198, 286, 441, 457
CviJI	RGCY	6 cut(s)	26, 110, 115, 126, 447, 532
CviKI_1	RGCY	6 cut(s)	26, 110, 115, 126, 447, 532
CviQI	GTAC	2 cut(s)	49, 133
DdeI	CTNAG	3 cut(s)	256, 393, 463
DpnI	GATC	6 cut(s)	35, 119, 375, 414, 506, 525
DpnII	GATC	6 cut(s)	33, 117, 373, 412, 504, 523
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	21, 105
Eco24I	GRGCYC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	466
Eco32I	GATATC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	532
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	21, 105
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	2 cut(s)	21, 105
FaeI	CATG	5 cut(s)	109, 201, 289, 444, 460
FaqI	GGGAC	2 cut(s)	186, 550
FatI	CATG	5 cut(s)	105, 197, 285, 440, 456
FauNDI	CATATG	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	438, 445
FokI	GGATG	2 cut(s)	152, 197
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	438, 445
GluI	GCNGC	2 cut(s)	438, 445
GsaI	CCCAGC	2 cut(s)	30, 114
HaeIII	GGCC	2 cut(s)	115, 532
HgaI	GACGC	1 cut(s)	547
Hin1II	CATG	5 cut(s)	109, 201, 289, 444, 460
HinfI	GANTC	4 cut(s)	41, 260, 331, 557
HphI	GGTGA	5 cut(s)	10, 95, 179, 200, 479
Hpy188I	TCNGA	2 cut(s)	259, 330
Hpy188III	TCNNGA	2 cut(s)	286, 377
Hpy99I	CGWCG	2 cut(s)	512, 550
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	218, 437, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	538
HpyF3I	CTNAG	3 cut(s)	256, 393, 463
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	5 cut(s)	109, 201, 289, 444, 460
Kzo9I	GATC	6 cut(s)	33, 117, 373, 412, 504, 523
LpnPI	CCDG	7 cut(s)	12, 96, 315, 414, 450, 519, 546
Lsp1109I	GCAGC	2 cut(s)	449, 456
MaeII	ACGT	1 cut(s)	62
MalI	GATC	6 cut(s)	35, 119, 375, 414, 506, 525
MboI	GATC	6 cut(s)	33, 117, 373, 412, 504, 523
MboII	GAAGA	3 cut(s)	28, 332, 338
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	128
MlyI	GAGTC	4 cut(s)	35, 254, 325, 551
MmeI	TCCRAC	1 cut(s)	353
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	538
NcoI	CCATGG	1 cut(s)	105
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	6 cut(s)	33, 117, 373, 412, 504, 523
NlaIII	CATG	5 cut(s)	109, 201, 289, 444, 460
NspI	RCATGY	1 cut(s)	444
PaeI	GCATGC	1 cut(s)	444
PagI	TCATGA	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	545
Pfl23II	CGTACG	2 cut(s)	48, 132
PflFI	GACNNNGTC	2 cut(s)	64, 281
PkrI	GCNGC	2 cut(s)	439, 446
Ple19I	CGATCG	1 cut(s)	507
PleI	GAGTC	4 cut(s)	35, 254, 325, 551
PpsI	GAGTC	4 cut(s)	35, 254, 325, 551
PshBI	ATTAAT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	532
PspFI	CCCAGC	2 cut(s)	26, 110
PspGI	CCWGG	1 cut(s)	532
PspLI	CGTACG	2 cut(s)	48, 132
PspPI	GGNCC	2 cut(s)	113, 530
PsuI	RGATCY	1 cut(s)	33
PsyI	GACNNNGTC	2 cut(s)	64, 281
PvuI	CGATCG	1 cut(s)	507
RsaI	GTAC	2 cut(s)	50, 134
RsaNI	GTAC	2 cut(s)	49, 133
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	438, 445
Sau3AI	GATC	6 cut(s)	33, 117, 373, 412, 504, 523
Sau96I	GGNCC	2 cut(s)	113, 530
SchI	GAGTC	4 cut(s)	35, 254, 325, 551
ScrFI	CCNGG	1 cut(s)	534
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	9 cut(s)	16, 23, 65, 285, 322, 394, 449, 469, 485
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
SphI	GCATGC	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	2 cut(s)	21, 105
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	6 cut(s)	39, 372, 408, 503, 507, 545
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	272
TseI	GCWGC	2 cut(s)	437, 444
TspDTI	ATGAA	2 cut(s)	239, 489
TspRI	CASTG	1 cut(s)	272
Tth111I	GACNNNGTC	2 cut(s)	64, 281
VspI	ATTAAT	1 cut(s)	234
XceI	RCATGY	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.