FvH4_4g11280
ERF Family

Belongs to the protein kinase superfamily. Tyr protein kinase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
15056977 .. 15062289
5313 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11280.t3

Sequence Viewer

Length: 1089 bp
ATGCGCAGGTGGCTTTGTTGTTCTTGTCATGTGGATGAGTCTTATCCATCACATGAAAGTGAACACCTGAAGAGCCCAGGGAGTTATGCTGATGGGAATCACAAGGGCTCTAAGGCGCCCGCTCCTATGAAGCCTGATATACAAAAGGCAGCACCACCTATTGAAGTCCCTCCATTGTCTCTGGAGGAGCTGAAAGAGAAGACTGACAATTTTGGATCTAAGTCACTGATTGGTGAAGGATCATATGGGAGAGTATATTATGCAAGCATGGATGATGGTAAAGCTGTTGCTGTCAAGAAGCTTGACGTTGCATCTGAGCCTGAGTCAAATGTTGAGTTTCTGACCCAGGTTTCCATGGTTTCTAGACTGAGGCATGACAATCTTGTTGAGTTGCTTGGTTACTGTGTTGAAGGAAGTCTACGGGTGCTTGCATATGAGTTTGCCACCATGGGTTCGCTGCATGATATATTGCATGGTAGAAAGGGAGTTCAAGGAGCACAACCTGGTCCAACACTTGACTGGATGCAGCGTGTGAGAATTGCAGTTGATGCAGCTAGGGGGTTGGAATACTTGCATGAGAAGGTTCAACCTCCTATTATACATAGAGATATCAGATCTAGTAATGTGCTTCTCTTTGAAGATTTCAAAGCCAAGATAGCAGATTTTAATCTTTCAAATCAGGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGAACTTTTGGTTATCATGCTCCAGAGTATGCAATGACTGGTCAATTGACACAGAAGAGTGATGTCTACAGCTTTGGAGTAGTTCTCCTAGAGCTTCTGACTGGGAGAAAGCCTGTCGATCATACAATGCCACGTGGACAGCAGAGTCTTGTGACTTGGGCTACTCCAAGATTGAGTGAAGATAAGGTTAAACAATGTGTAGATCCCAAGCTGAAAGGAGAATATCCTCCCAAAGGAGTTGCAAAGCTTGCAGCTGTGGCAGCTTTGTGTGTACAATATGAAGCTGAGTTCCGGCCAAACATGAGCATTGTTGTTAAGGCTCTTCAACCGCTTCTAAAGCCACCTGCACCTGCTCTAGAGTCATGA

Protein Analysis

363

Amino Acids

39.93

Weight (kDa)

7.19

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 74 - 286 6.8e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 75 - 349 3.9e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1075, 1081
AasI GACNNNNNNGTC 1 cut(s) 867
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 2 cut(s) 1075, 1081
AccB1I GGYRCC 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 122
AccI GTMKAC 2 cut(s) 418, 789
AciI CCGC 2 cut(s) 120, 1052
AclWI GGATC 3 cut(s) 223, 247, 920
AcoI YGGCCR 1 cut(s) 1016
AcuI CTGAAG 1 cut(s) 89
AcvI CACGTG 1 cut(s) 857
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 1 cut(s) 996
AfiI CCNNNNNNNGG 1 cut(s) 956
AgsI TTSAA 8 cut(s) 164, 410, 491, 587, 638, 646, 675, 1049
AjnI CCWGG 3 cut(s) 76, 345, 502
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 3 cut(s) 223, 247, 920
AoxI GGCC 1 cut(s) 1016
ApeKI GCWGC 7 cut(s) 149, 457, 526, 551, 695, 974, 983
AspLEI GCGC 2 cut(s) 6, 118
AspS9I GGNCC 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 506
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 2 cut(s) 77, 110
BarI GAAGNNNNNNTAC 2 cut(s) 402, 434
BbrPI CACGTG 1 cut(s) 857
BbsI GAAGAC 2 cut(s) 206, 695
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 7 cut(s) 161, 444, 538, 563, 682, 986, 995
BccI CCATC 3 cut(s) 55, 86, 269
BciT130I CCWGG 3 cut(s) 78, 347, 504
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 6 cut(s) 363, 555, 618, 714, 812, 1079
BfmI CTRYAG 1 cut(s) 790
BfoI RGCGCY 1 cut(s) 119
BfuAI ACCTGC 2 cut(s) 1075, 1081
BglII AGATCT 1 cut(s) 614
BisI GCNGC 7 cut(s) 150, 458, 527, 552, 696, 975, 984
BlsI GCNGC 7 cut(s) 151, 459, 528, 553, 697, 976, 985
Bme1390I CCNGG 3 cut(s) 78, 347, 504
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 2 cut(s) 117, 684
BmrFI CCNGG 3 cut(s) 78, 347, 504
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 3 cut(s) 320, 513, 538
BmuI ACTGGG 1 cut(s) 834
BpiI GAAGAC 2 cut(s) 206, 695
BplI GAGNNNNNCTC 2 cut(s) 792, 824
BpmI CTGGAG 2 cut(s) 203, 729
BsaAI YACGTR 1 cut(s) 857
BsaBI GATNNNNATC 2 cut(s) 96, 666
BsaHI GRCGYC 1 cut(s) 116
BsaJI CCNNGG 5 cut(s) 76, 77, 345, 354, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 956
Bse1I ACTGG 3 cut(s) 524, 766, 829
Bse3DI GCAATG 1 cut(s) 762
Bse8I GATNNNNATC 2 cut(s) 96, 666
BseBI CCWGG 3 cut(s) 78, 347, 504
BseDI CCNNGG 5 cut(s) 76, 77, 345, 354, 447
BseGI GGATG 3 cut(s) 40, 277, 528
BseJI GATNNNNATC 2 cut(s) 96, 666
BseLI CCNNNNNNNGG 1 cut(s) 956
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 4 cut(s) 306, 312, 359, 999
BseNI ACTGG 3 cut(s) 524, 766, 829
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 7 cut(s) 161, 444, 538, 563, 682, 986, 995
BsgI GTGCAG 1 cut(s) 1053
BshFI GGCC 1 cut(s) 1018
BshNI GGYRCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 1 cut(s) 1015
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 956
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 1018
Bsp1286I GDGCHC 3 cut(s) 77, 110, 499
Bsp1407I TGTACA 1 cut(s) 994
Bsp143I GATC 5 cut(s) 215, 239, 614, 841, 925
Bsp19I CCATGG 2 cut(s) 354, 447
BspACI CCGC 2 cut(s) 120, 1052
BspANI GGCC 1 cut(s) 1018
BspCNI CTCAG 4 cut(s) 307, 313, 360, 1000
BspHI TCATGA 1 cut(s) 1085
BspLI GGNNCC 2 cut(s) 117, 684
BspMI ACCTGC 2 cut(s) 1075, 1081
BspPI GGATC 3 cut(s) 223, 247, 920
BspQI GCTCTTC 2 cut(s) 65, 1050
BspT107I GGYRCC 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 762
BsrGI TGTACA 1 cut(s) 994
BsrI ACTGG 3 cut(s) 524, 766, 829
BssECI CCNNGG 5 cut(s) 76, 77, 345, 354, 447
BssMI GATC 5 cut(s) 215, 239, 614, 841, 925
BssNI GRCGYC 1 cut(s) 116
BssT1I CCWWGG 2 cut(s) 354, 447
Bst2UI CCWGG 3 cut(s) 78, 347, 504
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 3 cut(s) 65, 773, 1050
BstACI GRCGYC 1 cut(s) 116
BstAPI GCANNNNNTGC 2 cut(s) 548, 971
BstAUI TGTACA 1 cut(s) 994
BstBAI YACGTR 1 cut(s) 857
BstC8I GCNNGC 4 cut(s) 120, 265, 429, 972
BstDEI CTNAG 6 cut(s) 111, 219, 315, 321, 368, 1008
BstDSI CCRYGG 2 cut(s) 354, 447
BstENI CCTNNNNNAGG 1 cut(s) 954
BstF5I GGATG 3 cut(s) 40, 277, 528
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 2 cut(s) 6, 118
BstKTI GATC 5 cut(s) 218, 242, 617, 844, 928
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 5 cut(s) 215, 239, 614, 841, 925
BstMWI GCNNNNNNNGC 7 cut(s) 10, 548, 656, 971, 980, 983, 1060
BstNI CCWGG 3 cut(s) 78, 347, 504
BstSCI CCNGG 3 cut(s) 76, 345, 502
BstSFI CTRYAG 1 cut(s) 790
BstV1I GCAGC 7 cut(s) 161, 444, 538, 563, 682, 986, 995
BstV2I GAAGAC 2 cut(s) 206, 695
BstX2I RGATCY 3 cut(s) 215, 614, 925
BstYI RGATCY 3 cut(s) 215, 614, 925
BsuRI GGCC 1 cut(s) 1018
BtgI CCRYGG 2 cut(s) 354, 447
BtsCI GGATG 3 cut(s) 40, 277, 528
BtsIMutI CAGTG 1 cut(s) 224
BveI ACCTGC 2 cut(s) 1075, 1081
Cac8I GCNNGC 4 cut(s) 120, 265, 429, 972
CciI TCATGA 1 cut(s) 1085
CfoI GCGC 2 cut(s) 6, 118
Cfr13I GGNCC 1 cut(s) 506
CsiI ACCWGGT 1 cut(s) 502
Csp6I GTAC 1 cut(s) 995
CviQI GTAC 1 cut(s) 995
DdeI CTNAG 6 cut(s) 111, 219, 315, 321, 368, 1008
DinI GGCGCC 1 cut(s) 117
DpnI GATC 5 cut(s) 217, 241, 616, 843, 927
DpnII GATC 5 cut(s) 215, 239, 614, 841, 925
DrdI GACNNNNNNGTC 1 cut(s) 867
DseDI GACNNNNNNGTC 1 cut(s) 867
EaeI YGGCCR 1 cut(s) 1016
Eam1104I CTCTTC 3 cut(s) 65, 773, 1050
EarI CTCTTC 3 cut(s) 65, 773, 1050
Eco130I CCWWGG 2 cut(s) 354, 447
Eco24I GRGCYC 2 cut(s) 77, 110
Eco32I GATATC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 89
Eco72I CACGTG 1 cut(s) 857
EcoNI CCTNNNNNAGG 1 cut(s) 954
EcoRII CCWGG 3 cut(s) 76, 345, 502
EcoRV GATATC 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 354, 447
EcoT38I GRGCYC 2 cut(s) 77, 110
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
ErhI CCWWGG 2 cut(s) 354, 447
FaqI GGGAC 1 cut(s) 152
FauI CCCGC 1 cut(s) 127
FauNDI CATATG 2 cut(s) 244, 433
FblI GTMKAC 2 cut(s) 418, 789
Fnu4HI GCNGC 7 cut(s) 150, 458, 527, 552, 696, 975, 984
FokI GGATG 3 cut(s) 47, 284, 535
FriOI GRGCYC 2 cut(s) 77, 110
Fsp4HI GCNGC 7 cut(s) 150, 458, 527, 552, 696, 975, 984
FspBI CTAG 6 cut(s) 363, 555, 618, 714, 812, 1079
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 117
GluI GCNGC 7 cut(s) 150, 458, 527, 552, 696, 975, 984
GsuI CTGGAG 2 cut(s) 203, 729
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 1 cut(s) 1018
HapII CCGG 1 cut(s) 1015
HhaI GCGC 2 cut(s) 6, 118
Hin1I GRCGYC 1 cut(s) 116
Hin6I GCGC 2 cut(s) 4, 116
HinP1I GCGC 2 cut(s) 4, 116
HindIII AAGCTT 2 cut(s) 299, 968
HinfI GANTC 5 cut(s) 38, 97, 323, 868, 1082
HpaII CCGG 1 cut(s) 1015
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 5 cut(s) 62, 419, 790, 860, 995
Hpy188I TCNGA 4 cut(s) 316, 342, 614, 822
Hpy188III TCNNGA 7 cut(s) 182, 295, 363, 686, 746, 1079, 1086
Hpy8I GTNNAC 5 cut(s) 62, 419, 790, 860, 995
HpyAV CCTTC 3 cut(s) 230, 404, 574
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 2 cut(s) 306, 856
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 548, 656, 971, 980, 983, 1060
HpyF3I CTNAG 6 cut(s) 111, 219, 315, 321, 368, 1008
HpySE526I ACGT 2 cut(s) 306, 856
Hsp92I GRCGYC 1 cut(s) 116
HspAI GCGC 2 cut(s) 4, 116
KasI GGCGCC 1 cut(s) 115
Kzo9I GATC 5 cut(s) 215, 239, 614, 841, 925
LguI GCTCTTC 2 cut(s) 65, 1050
LmnI GCTCC 5 cut(s) 127, 187, 494, 688, 748
Lsp1109I GCAGC 7 cut(s) 161, 444, 538, 563, 682, 986, 995
LweI GCATC 3 cut(s) 320, 513, 538
MabI ACCWGGT 1 cut(s) 502
MaeI CTAG 6 cut(s) 363, 555, 618, 714, 812, 1079
MaeII ACGT 2 cut(s) 306, 856
MaeIII GTNAC 3 cut(s) 222, 398, 874
MalI GATC 5 cut(s) 217, 241, 616, 843, 927
MbiI CCGCTC 1 cut(s) 122
MboI GATC 5 cut(s) 215, 239, 614, 841, 925
MboII GAAGA 7 cut(s) 82, 211, 650, 695, 790, 914, 1037
MfeI CAATTG 1 cut(s) 767
MflI RGATCY 3 cut(s) 215, 614, 925
MhlI GDGCHC 3 cut(s) 77, 110, 499
MluCI AATT 3 cut(s) 208, 537, 767
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 3 cut(s) 47, 332, 877
MmeI TCCRAC 2 cut(s) 533, 543
MnlI CCTC 5 cut(s) 178, 180, 363, 600, 960
MseI TTAA 3 cut(s) 666, 912, 1038
MslI CAYNNNNRTG 2 cut(s) 33, 57
MspA1I CMGCKG 1 cut(s) 977
MspI CCGG 1 cut(s) 1015
MspR9I CCNGG 3 cut(s) 78, 347, 504
MunI CAATTG 1 cut(s) 767
MvaI CCWGG 3 cut(s) 78, 347, 504
MwoI GCNNNNNNNGC 7 cut(s) 10, 548, 656, 971, 980, 983, 1060
NarI GGCGCC 1 cut(s) 116
NcoI CCATGG 2 cut(s) 354, 447
NdeI CATATG 2 cut(s) 244, 433
NdeII GATC 5 cut(s) 215, 239, 614, 841, 925
NlaIV GGNNCC 2 cut(s) 117, 684
NmuCI GTSAC 2 cut(s) 222, 874
NsbI TGCGCA 1 cut(s) 5
PagI TCATGA 1 cut(s) 1085
PaqCI CACCTGC 2 cut(s) 1075, 1081
PasI CCCWGGG 1 cut(s) 77
PciSI GCTCTTC 2 cut(s) 65, 1050
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 7 cut(s) 151, 459, 528, 553, 697, 976, 985
PleI GAGTC 3 cut(s) 46, 331, 876
PluTI GGCGCC 1 cut(s) 119
PmaCI CACGTG 1 cut(s) 857
PmlI CACGTG 1 cut(s) 857
PpsI GAGTC 3 cut(s) 46, 331, 876
Ppu21I YACGTR 1 cut(s) 857
Psp6I CCWGG 3 cut(s) 76, 345, 502
PspCI CACGTG 1 cut(s) 857
PspGI CCWGG 3 cut(s) 76, 345, 502
PspN4I GGNNCC 2 cut(s) 117, 684
PspPI GGNCC 1 cut(s) 506
PsuI RGATCY 3 cut(s) 215, 614, 925
PvuII CAGCTG 1 cut(s) 977
RsaI GTAC 1 cut(s) 996
RsaNI GTAC 1 cut(s) 995
RseI CAYNNNNRTG 2 cut(s) 33, 57
SapI GCTCTTC 2 cut(s) 65, 1050
SaqAI TTAA 3 cut(s) 666, 912, 1038
SatI GCNGC 7 cut(s) 150, 458, 527, 552, 696, 975, 984
Sau3AI GATC 5 cut(s) 215, 239, 614, 841, 925
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 3 cut(s) 47, 332, 877
ScrFI CCNGG 3 cut(s) 78, 347, 504
SduI GDGCHC 3 cut(s) 77, 110, 499
SexAI ACCWGGT 1 cut(s) 502
SfaNI GCATC 3 cut(s) 320, 513, 538
SfcI CTRYAG 1 cut(s) 790
SfoI GGCGCC 1 cut(s) 117
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 2 cut(s) 33, 57
Sse9I AATT 3 cut(s) 208, 537, 767
SsiI CCGC 2 cut(s) 120, 1052
SspDI GGCGCC 1 cut(s) 115
SspMI CTAG 6 cut(s) 363, 555, 618, 714, 812, 1079
StyD4I CCNGG 3 cut(s) 76, 345, 502
StyI CCWWGG 2 cut(s) 354, 447
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 2 cut(s) 309, 859
TaqI TCGA 1 cut(s) 840
TasI AATT 3 cut(s) 208, 537, 767
TatI WGTACW 1 cut(s) 994
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 3 cut(s) 666, 912, 1038
Tru9I TTAA 3 cut(s) 666, 912, 1038
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 2 cut(s) 222, 874
TseI GCWGC 7 cut(s) 149, 457, 526, 551, 695, 974, 983
Tsp45I GTSAC 2 cut(s) 222, 874
TspDTI ATGAA 4 cut(s) 69, 143, 695, 1017
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 506
XagI CCTNNNNNAGG 1 cut(s) 954
XbaI TCTAGA 2 cut(s) 362, 1078
XcmI CCANNNNNNNNNTGG 2 cut(s) 516, 718
XmiI GTMKAC 2 cut(s) 418, 789
XspI CTAG 6 cut(s) 363, 555, 618, 714, 812, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.