Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004895

Physical Location & Seq

Genomic Coordinates Forward (+)

27548672 .. 27553895

Gene Structure 5224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG138300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGGGCAGAGACTGTCGTAGCCGTGGTTTAGTGGCACATGCCCCTCCACCTGGTTACTTTGTGAGACTTGAGAATACAAGTGCTGACGACGATTTTTATTTGAGGAAGAAAGTCAGGATGCGCAGGTGGCTTTGTTGTTCTTGTCACGTGGAGGAGTCTTATTCAGCACATGAAAATGAACACCTGAAGAGCCCAAGGAGTTATGATGGGAACAATAAGGGCACTAAGGTGACCACTCCTTTGAAGTCTGATGTACAAAAGGCAGCACCACCTATTGAAGTCCCTCCATTGTCTCTGGAGGAGCTGAAAGAGAAGACTGACAATTTTGGATCTAAGTCACTGATCGGTGAAGGATCATATGGGAGGGTATACTATGCAAGCATGGATGATGGTAAAGCTGTTGCAGTCAAGAAGCTTGACGTTGCATCTGAGCCCGAGTCAAATGTTGAGTTTCTGACCCAGGCTACTCCAAGATTGAGTGAAGATAAGGTTAAACAATGTGTAGATCCTAAGCTGAAGGGAGAATATCCTCCGAAAGGAGTCGCAAAGCTAGCAGCTGTGGCAGCTTTGTGTGTACAATATGAAGCTGAGTTCCGGCCAAATATGAGCATTGTTGTTAAGGCGCTACAACCGCTTCTAAAGCCACCTGCACCAGCTCCAGAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

223

Amino Acids

24.64

Weight (kDa)

8.13

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43230 AT2G43230 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350
fragaria_vesca	FvH4_4g11280 FvH4_4g11280 FvH4_4g11280
malus_domestica	MD04G1038500.v1.1 MD13G1258500.v1.1
prunus_persica	Prupe.1G189000_v2.0.a1 Prupe.1G189000_v2.0.a1
pyrus_communis	pycom13g25750
rosa_chinensis	RchiOBHm_Chr4g0407431
rosa_laevigata	RLG00000008720
rosa_multiflora	Rmu_sc0004841.1_g000042
rosa_roxburghii	Rroxscaffold_5G00352020
rosa_rugosa	Rorug04G0079700 Rorug04G0079700 Rorug04G0079800 Rorug04G0079900
rosa_samantha	Rh4AG144300 Rh4BG142200 Rh4CG150900 Rh4DG138300
rosa_wichuraiana	Rw0G014480 Rw4G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	117, 658
Acc16I	TGCGCA	1 cut(s)	125
Acc36I	ACCTGC	2 cut(s)	117, 658
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	1 cut(s)	635
AclWI	GGATC	3 cut(s)	340, 364, 503
AcoI	YGGCCR	1 cut(s)	599
AcuI	CTGAAG	2 cut(s)	209, 539
AcvI	CACGTG	1 cut(s)	151
AfaI	GTAC	2 cut(s)	258, 579
AfiI	CCNNNNNNNGG	2 cut(s)	53, 539
AgsI	TTSAA	2 cut(s)	247, 281
AjnI	CCWGG	2 cut(s)	52, 462
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	9 cut(s)	307, 401, 418, 517, 553, 560, 569, 590, 659
AluI	AGCT	9 cut(s)	307, 401, 418, 517, 553, 560, 569, 590, 659
Alw26I	GTCTC	3 cut(s)	6, 61, 300
AlwI	GGATC	3 cut(s)	340, 364, 503
AlwNI	CAGNNNCTG	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	3 cut(s)	266, 557, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspLEI	GCGC	2 cut(s)	126, 628
AsuHPI	GGTGA	2 cut(s)	244, 362
AsuNHI	GCTAGC	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	197, 438
BbrPI	CACGTG	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	3 cut(s)	278, 569, 578
BccI	CCATC	2 cut(s)	203, 386
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	2 cut(s)	54, 464
BcoDI	GTCTC	3 cut(s)	6, 61, 300
BfaI	CTAG	1 cut(s)	554
BfoI	RGCGCY	1 cut(s)	629
BfuAI	ACCTGC	2 cut(s)	117, 658
BisI	GCNGC	3 cut(s)	267, 558, 567
BlsI	GCNGC	3 cut(s)	268, 559, 568
Bme1390I	CCNGG	2 cut(s)	54, 464
BmeT110I	CYCGRG	1 cut(s)	437
BmrFI	CCNGG	2 cut(s)	54, 464
BmsI	GCATC	2 cut(s)	111, 437
BmtI	GCTAGC	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	323
BpmI	CTGGAG	2 cut(s)	320, 645
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	92
BsaAI	YACGTR	1 cut(s)	151
BsaJI	CCNNGG	3 cut(s)	25, 197, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 539
BseBI	CCWGG	2 cut(s)	54, 464
BseDI	CCNNGG	3 cut(s)	25, 197, 462
BseGI	GGATG	2 cut(s)	126, 394
BseLI	CCNNNNNNNGG	2 cut(s)	53, 539
BseMII	CTCAG	2 cut(s)	423, 582
BseRI	GAGGAG	2 cut(s)	170, 317
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	3 cut(s)	278, 569, 578
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	1 cut(s)	601
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	598
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	53, 539
BsmAI	GTCTC	3 cut(s)	6, 61, 300
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	601
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	3 cut(s)	197, 227, 438
Bsp1407I	TGTACA	2 cut(s)	256, 577
Bsp143I	GATC	4 cut(s)	332, 345, 356, 508
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	2 cut(s)	424, 583
BspMI	ACCTGC	2 cut(s)	117, 658
BspOI	GCTAGC	1 cut(s)	557
BspPI	GGATC	3 cut(s)	340, 364, 503
BspQI	GCTCTTC	1 cut(s)	185
BsrGI	TGTACA	2 cut(s)	256, 577
BssECI	CCNNGG	3 cut(s)	25, 197, 462
BssMI	GATC	4 cut(s)	332, 345, 356, 508
BssNAI	GTATAC	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	197
Bst1107I	GTATAC	1 cut(s)	373
Bst2UI	CCWGG	2 cut(s)	54, 464
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	185
BstAUI	TGTACA	2 cut(s)	256, 577
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	382, 555
BstDEI	CTNAG	5 cut(s)	228, 336, 432, 513, 591
BstDSI	CCRYGG	1 cut(s)	25
BstEII	GGTNACC	1 cut(s)	232
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	2 cut(s)	126, 394
BstH2I	RGCGCY	1 cut(s)	629
BstHHI	GCGC	2 cut(s)	126, 628
BstKTI	GATC	4 cut(s)	335, 348, 359, 511
BstMAI	GTCTC	3 cut(s)	6, 61, 300
BstMBI	GATC	4 cut(s)	332, 345, 356, 508
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 554, 563, 566, 634, 643
BstNI	CCWGG	2 cut(s)	54, 464
BstNSI	RCATGY	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	52, 462
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	278, 569, 578
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	2 cut(s)	332, 508
BstYI	RGATCY	2 cut(s)	332, 508
BstZ17I	GTATAC	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	601
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	126, 394
BtsIMutI	CAGTG	1 cut(s)	341
BveI	ACCTGC	2 cut(s)	117, 658
Cac8I	GCNNGC	2 cut(s)	382, 555
CaiI	CAGNNNCTG	1 cut(s)	15
CfoI	GCGC	2 cut(s)	126, 628
CsiI	ACCWGGT	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	257, 578
CviAII	CATG	3 cut(s)	41, 173, 385
CviQI	GTAC	2 cut(s)	257, 578
DdeI	CTNAG	5 cut(s)	228, 336, 432, 513, 591
DpnI	GATC	4 cut(s)	334, 347, 358, 510
DpnII	GATC	4 cut(s)	332, 345, 356, 508
EaeI	YGGCCR	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	197, 438
Eco57I	CTGAAG	2 cut(s)	209, 539
Eco72I	CACGTG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	437
Eco91I	GGTNACC	1 cut(s)	232
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	52, 462
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	197, 438
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	3 cut(s)	44, 176, 388
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	3 cut(s)	40, 172, 384
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	3 cut(s)	267, 558, 567
FokI	GGATG	2 cut(s)	133, 401
FriOI	GRGCYC	2 cut(s)	197, 438
Fsp4HI	GCNGC	3 cut(s)	267, 558, 567
FspBI	CTAG	1 cut(s)	554
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	2 cut(s)	125, 627
GluI	GCNGC	3 cut(s)	267, 558, 567
GsuI	CTGGAG	2 cut(s)	320, 645
HaeII	RGCGCY	1 cut(s)	629
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	1 cut(s)	598
HhaI	GCGC	2 cut(s)	126, 628
Hin1II	CATG	3 cut(s)	44, 176, 388
Hin6I	GCGC	2 cut(s)	124, 626
HinP1I	GCGC	2 cut(s)	124, 626
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	4 cut(s)	158, 440, 543, 665
HpaII	CCGG	1 cut(s)	598
HphI	GGTGA	2 cut(s)	244, 362
Hpy166II	GTNNAC	2 cut(s)	373, 578
Hpy188I	TCNGA	4 cut(s)	253, 433, 459, 537
Hpy188III	TCNNGA	5 cut(s)	118, 299, 412, 662, 669
Hpy8I	GTNNAC	2 cut(s)	373, 578
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	347, 514
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	2 cut(s)	150, 423
HpyCH4V	TGCA	4 cut(s)	380, 407, 428, 653
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 554, 563, 566, 634, 643
HpyF3I	CTNAG	5 cut(s)	228, 336, 432, 513, 591
HpySE526I	ACGT	2 cut(s)	150, 423
Hsp92II	CATG	3 cut(s)	44, 176, 388
HspAI	GCGC	2 cut(s)	124, 626
Kzo9I	GATC	4 cut(s)	332, 345, 356, 508
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	304, 664
Lsp1109I	GCAGC	3 cut(s)	278, 569, 578
LweI	GCATC	2 cut(s)	111, 437
MabI	ACCWGGT	1 cut(s)	52
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	2 cut(s)	150, 423
MaeIII	GTNAC	4 cut(s)	56, 146, 232, 339
MalI	GATC	4 cut(s)	334, 347, 358, 510
MboI	GATC	4 cut(s)	332, 345, 356, 508
MboII	GAAGA	4 cut(s)	121, 202, 328, 497
MflI	RGATCY	2 cut(s)	332, 508
MhlI	GDGCHC	3 cut(s)	197, 227, 438
MluCI	AATT	1 cut(s)	325
MlyI	GAGTC	3 cut(s)	167, 449, 552
MnlI	CCTC	7 cut(s)	57, 99, 148, 295, 297, 360, 543
MseI	TTAA	2 cut(s)	495, 621
MslI	CAYNNNNRTG	2 cut(s)	177, 230
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	1 cut(s)	598
MspR9I	CCNGG	2 cut(s)	54, 464
MvaI	CCWGG	2 cut(s)	54, 464
MwoI	GCNNNNNNNGC	6 cut(s)	130, 554, 563, 566, 634, 643
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	4 cut(s)	332, 345, 356, 508
NheI	GCTAGC	1 cut(s)	553
NlaIII	CATG	3 cut(s)	44, 176, 388
NmuCI	GTSAC	3 cut(s)	146, 232, 339
NsbI	TGCGCA	1 cut(s)	125
NspI	RCATGY	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	230
PaqCI	CACCTGC	2 cut(s)	117, 658
PciSI	GCTCTTC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	268, 559, 568
PleI	GAGTC	3 cut(s)	166, 448, 551
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
PpsI	GAGTC	3 cut(s)	166, 448, 551
Ppu21I	YACGTR	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	52, 462
PspCI	CACGTG	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	2 cut(s)	52, 462
PstNI	CAGNNNCTG	1 cut(s)	15
PsuI	RGATCY	2 cut(s)	332, 508
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	2 cut(s)	258, 579
RsaNI	GTAC	2 cut(s)	257, 578
RseI	CAYNNNNRTG	2 cut(s)	177, 230
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	495, 621
SatI	GCNGC	3 cut(s)	267, 558, 567
Sau3AI	GATC	4 cut(s)	332, 345, 356, 508
SchI	GAGTC	3 cut(s)	167, 449, 552
ScrFI	CCNGG	2 cut(s)	54, 464
SduI	GDGCHC	3 cut(s)	197, 227, 438
SexAI	ACCWGGT	1 cut(s)	52
SfaNI	GCATC	2 cut(s)	111, 437
SmiMI	CAYNNNNRTG	2 cut(s)	177, 230
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	1 cut(s)	635
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	52, 462
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	2 cut(s)	153, 426
TasI	AATT	1 cut(s)	325
TatI	WGTACW	2 cut(s)	256, 577
Tru1I	TTAA	2 cut(s)	495, 621
Tru9I	TTAA	2 cut(s)	495, 621
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	3 cut(s)	146, 232, 339
TseI	GCWGC	3 cut(s)	266, 557, 566
Tsp45I	GTSAC	3 cut(s)	146, 232, 339
TspDTI	ATGAA	3 cut(s)	189, 195, 600
TspRI	CASTG	1 cut(s)	348
XagI	CCTNNNNNAGG	1 cut(s)	537
XceI	RCATGY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.