Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00649

Orthogroup ID

OG0004895

Physical Location & Seq

Genomic Coordinates Reverse (-)

1164 .. 3937

Gene Structure 2774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGGGCAGAGACTGTCGTAGCCGTGGTTTAGTGGCACATGCCCCTCCACCTGGTTACTTTGTGAGACTTGAGAATACAAGTGCTGACGACGATTTTTATTTGAGGAAGAAAGTCAGGATGCGCAGGTGGCTTTGTTGTTCTTGTCACGTGGAGGAGTCTTATTCAGCACATGAAAATGAACACCTGAAGAGCCCAAGGAGTTATGATGGGAACAATAAGGGCACTAAGGTGACCACTCCTTTGAAGTCTGATGTACAAAAGGCAGCACCACCTATTGAAGTCCCTCCATTGTCTCTGGAGGAGCTGAAAGAGAAGACTGACAATTTTGGATCTAAGTCACTGATCGGTGAAGGATCATATGGGAGAGTATACTATGCAAGCATGGATGATGGTAAAGCTGTTGCCGTCAAGAAGCTTGACGTTGCATCTGAGCCCGAGTCAAATGTTGAGTTTCTGACCCAGGTTTCCATGGTTTCTAGACTGAAGCACGACAATCTTGTTGAGCTGCTTGGTTACTGTGTTGAAGGAAGTCTGCGAGTACTTGCGTATGAGTTTGCCACCATGGGATCTCTTCATGACATATTACATGGTAGAAAGGGCGTTCAAGGGGCGCAACCTGGTCCAACACTTGACTGGATGCAGCGTGTGAGAATTGCAGTTGATGCAGCCAGGGGGTTGGAATACTTGCATGAGAAGGTTCAACCTCCTATTATACATAGAGATATCAGATCTAGTAACGTGCTTCTCTTTGAAGATTTCAAAGCCAAGATAGCAGATTTTAATCTTTCGAATCAGGCTCCTGATATGGCTGCTCGTCTTCATTCCACTCGAGTTTTGGGAACTTTTGGTTATCATGCTCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

289

Amino Acids

32.33

Weight (kDa)

6.84

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	113 - 289	9.5e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	114 - 289	5.4e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43230 AT2G43230 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350 AT3G59350
fragaria_vesca	FvH4_4g11280 FvH4_4g11280 FvH4_4g11280
malus_domestica	MD04G1038500.v1.1 MD13G1258500.v1.1
prunus_persica	Prupe.1G189000_v2.0.a1 Prupe.1G189000_v2.0.a1
pyrus_communis	pycom13g25750
rosa_chinensis	RchiOBHm_Chr4g0407431
rosa_laevigata	RLG00000008720
rosa_multiflora	Rmu_sc0004841.1_g000042
rosa_roxburghii	Rroxscaffold_5G00352020
rosa_rugosa	Rorug04G0079700 Rorug04G0079700 Rorug04G0079800 Rorug04G0079900
rosa_samantha	Rh4AG144300 Rh4BG142200 Rh4CG150900 Rh4DG138300
rosa_wichuraiana	Rw0G014480 Rw4G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	117
Acc16I	TGCGCA	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	372
AclWI	GGATC	3 cut(s)	340, 364, 577
AcuI	CTGAAG	2 cut(s)	209, 506
AcvI	CACGTG	1 cut(s)	151
AfaI	GTAC	2 cut(s)	258, 543
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	7 cut(s)	247, 281, 527, 608, 704, 755, 763
AjnI	CCWGG	4 cut(s)	52, 462, 619, 671
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	4 cut(s)	307, 401, 418, 508
AluI	AGCT	4 cut(s)	307, 401, 418, 508
Alw26I	GTCTC	3 cut(s)	6, 61, 300
AlwI	GGATC	3 cut(s)	340, 364, 577
AlwNI	CAGNNNCTG	1 cut(s)	15
Ama87I	CYCGRG	2 cut(s)	437, 831
ApeKI	GCWGC	5 cut(s)	266, 508, 643, 668, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspLEI	GCGC	2 cut(s)	126, 616
AspS9I	GGNCC	1 cut(s)	623
AsuHPI	GGTGA	2 cut(s)	244, 362
AsuII	TTCGAA	1 cut(s)	791
AvaI	CYCGRG	2 cut(s)	437, 831
AvaII	GGWCC	1 cut(s)	623
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	197, 438
BbrPI	CACGTG	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	323, 812
BbvI	GCAGC	5 cut(s)	278, 495, 655, 680, 799
BccI	CCATC	2 cut(s)	203, 386
BceAI	ACGGC	2 cut(s)	9, 392
BciT130I	CCWGG	4 cut(s)	54, 464, 621, 673
BcoDI	GTCTC	3 cut(s)	6, 61, 300
BfaI	CTAG	2 cut(s)	480, 735
BfuAI	ACCTGC	1 cut(s)	117
BglII	AGATCT	1 cut(s)	731
BisI	GCNGC	5 cut(s)	267, 509, 644, 669, 813
BlsI	GCNGC	5 cut(s)	268, 510, 645, 670, 814
BmcAI	AGTACT	1 cut(s)	543
Bme1390I	CCNGG	4 cut(s)	54, 464, 621, 673
Bme18I	GGWCC	1 cut(s)	623
BmeT110I	CYCGRG	2 cut(s)	437, 831
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	1 cut(s)	801
BmrFI	CCNGG	4 cut(s)	54, 464, 621, 673
BmsI	GCATC	4 cut(s)	111, 437, 630, 655
BpiI	GAAGAC	2 cut(s)	323, 812
BpmI	CTGGAG	2 cut(s)	320, 846
Bpu14I	TTCGAA	1 cut(s)	791
BpuEI	CTTGAG	1 cut(s)	92
BsaAI	YACGTR	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	783
BsaJI	CCNNGG	6 cut(s)	25, 197, 462, 471, 564, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	4 cut(s)	54, 464, 621, 673
BseDI	CCNNGG	6 cut(s)	25, 197, 462, 471, 564, 672
BseGI	GGATG	3 cut(s)	126, 394, 645
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	2 cut(s)	170, 317
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	5 cut(s)	278, 495, 655, 680, 799
BsiHKCI	CYCGRG	2 cut(s)	437, 831
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	3 cut(s)	6, 61, 300
BsmFI	GGGAC	1 cut(s)	269
BsoBI	CYCGRG	2 cut(s)	437, 831
Bsp119I	TTCGAA	1 cut(s)	791
Bsp1286I	GDGCHC	3 cut(s)	197, 227, 438
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	5 cut(s)	332, 345, 356, 569, 731
Bsp19I	CCATGG	2 cut(s)	471, 564
BspCNI	CTCAG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	801
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	3 cut(s)	340, 364, 577
BspQI	GCTCTTC	1 cut(s)	185
BspT104I	TTCGAA	1 cut(s)	791
BsrGI	TGTACA	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	6 cut(s)	25, 197, 462, 471, 564, 672
BssMI	GATC	5 cut(s)	332, 345, 356, 569, 731
BssNAI	GTATAC	1 cut(s)	373
BssT1I	CCWWGG	3 cut(s)	197, 471, 564
Bst1107I	GTATAC	1 cut(s)	373
Bst2UI	CCWGG	4 cut(s)	54, 464, 621, 673
Bst4CI	ACNGT	2 cut(s)	17, 521
Bst6I	CTCTTC	2 cut(s)	185, 579
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstAUI	TGTACA	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	151
BstBI	TTCGAA	1 cut(s)	791
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	3 cut(s)	228, 336, 432
BstDSI	CCRYGG	3 cut(s)	25, 471, 564
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	126, 394, 645
BstHHI	GCGC	2 cut(s)	126, 616
BstKTI	GATC	5 cut(s)	335, 348, 359, 572, 734
BstMAI	GTCTC	3 cut(s)	6, 61, 300
BstMBI	GATC	5 cut(s)	332, 345, 356, 569, 731
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 665, 773
BstNI	CCWGG	4 cut(s)	54, 464, 621, 673
BstNSI	RCATGY	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	4 cut(s)	52, 462, 619, 671
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	5 cut(s)	278, 495, 655, 680, 799
BstV2I	GAAGAC	2 cut(s)	323, 812
BstX2I	RGATCY	3 cut(s)	332, 569, 731
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	3 cut(s)	332, 569, 731
BstZ17I	GTATAC	1 cut(s)	373
BtgI	CCRYGG	3 cut(s)	25, 471, 564
BtsCI	GGATG	3 cut(s)	126, 394, 645
BtsIMutI	CAGTG	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	15
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	2 cut(s)	126, 616
Cfr13I	GGNCC	1 cut(s)	623
CsiI	ACCWGGT	2 cut(s)	52, 619
Csp6I	GTAC	2 cut(s)	257, 542
CviAII	CATG	9 cut(s)	41, 173, 385, 472, 565, 578, 590, 692, 857
CviQI	GTAC	2 cut(s)	257, 542
DdeI	CTNAG	3 cut(s)	228, 336, 432
DpnI	GATC	5 cut(s)	334, 347, 358, 571, 733
DpnII	GATC	5 cut(s)	332, 345, 356, 569, 731
Eam1104I	CTCTTC	2 cut(s)	185, 579
EarI	CTCTTC	2 cut(s)	185, 579
Eco130I	CCWWGG	3 cut(s)	197, 471, 564
Eco24I	GRGCYC	2 cut(s)	197, 438
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	623
Eco57I	CTGAAG	2 cut(s)	209, 506
Eco72I	CACGTG	1 cut(s)	151
Eco88I	CYCGRG	2 cut(s)	437, 831
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	4 cut(s)	52, 462, 619, 671
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	3 cut(s)	197, 471, 564
EcoT38I	GRGCYC	2 cut(s)	197, 438
ErhI	CCWWGG	3 cut(s)	197, 471, 564
FaeI	CATG	9 cut(s)	44, 176, 388, 475, 568, 581, 593, 695, 860
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	9 cut(s)	40, 172, 384, 471, 564, 577, 589, 691, 856
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	5 cut(s)	267, 509, 644, 669, 813
FokI	GGATG	3 cut(s)	133, 401, 652
FriOI	GRGCYC	2 cut(s)	197, 438
Fsp4HI	GCNGC	5 cut(s)	267, 509, 644, 669, 813
FspBI	CTAG	2 cut(s)	480, 735
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	2 cut(s)	125, 615
GluI	GCNGC	5 cut(s)	267, 509, 644, 669, 813
GsuI	CTGGAG	2 cut(s)	320, 846
HhaI	GCGC	2 cut(s)	126, 616
Hin1II	CATG	9 cut(s)	44, 176, 388, 475, 568, 581, 593, 695, 860
Hin6I	GCGC	2 cut(s)	124, 614
HinP1I	GCGC	2 cut(s)	124, 614
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	158, 440, 793
HphI	GGTGA	2 cut(s)	244, 362
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	4 cut(s)	253, 433, 459, 731
Hpy188III	TCNNGA	7 cut(s)	118, 299, 412, 480, 578, 803, 863
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	347, 521, 691
HpyCH4III	ACNGT	2 cut(s)	17, 521
HpyCH4IV	ACGT	3 cut(s)	150, 423, 741
HpyCH4V	TGCA	6 cut(s)	380, 428, 643, 659, 668, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 665, 773
HpyF3I	CTNAG	3 cut(s)	228, 336, 432
HpySE526I	ACGT	3 cut(s)	150, 423, 741
Hsp92II	CATG	9 cut(s)	44, 176, 388, 475, 568, 581, 593, 695, 860
HspAI	GCGC	2 cut(s)	124, 614
Kzo9I	GATC	5 cut(s)	332, 345, 356, 569, 731
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	304, 805, 865
Lsp1109I	GCAGC	5 cut(s)	278, 495, 655, 680, 799
LweI	GCATC	4 cut(s)	111, 437, 630, 655
MabI	ACCWGGT	2 cut(s)	52, 619
MaeI	CTAG	2 cut(s)	480, 735
MaeII	ACGT	3 cut(s)	150, 423, 741
MaeIII	GTNAC	6 cut(s)	56, 146, 232, 339, 515, 737
MalI	GATC	5 cut(s)	334, 347, 358, 571, 733
MboI	GATC	5 cut(s)	332, 345, 356, 569, 731
MboII	GAAGA	6 cut(s)	121, 202, 328, 566, 767, 812
MflI	RGATCY	3 cut(s)	332, 569, 731
MhlI	GDGCHC	3 cut(s)	197, 227, 438
MluCI	AATT	2 cut(s)	325, 654
MlyI	GAGTC	2 cut(s)	167, 449
MmeI	TCCRAC	2 cut(s)	650, 660
MnlI	CCTC	6 cut(s)	57, 99, 148, 295, 297, 717
MseI	TTAA	1 cut(s)	783
MslI	CAYNNNNRTG	2 cut(s)	177, 230
MspR9I	CCNGG	4 cut(s)	54, 464, 621, 673
MvaI	CCWGG	4 cut(s)	54, 464, 621, 673
MwoI	GCNNNNNNNGC	3 cut(s)	130, 665, 773
NcoI	CCATGG	2 cut(s)	471, 564
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	5 cut(s)	332, 345, 356, 569, 731
NlaIII	CATG	9 cut(s)	44, 176, 388, 475, 568, 581, 593, 695, 860
NlaIV	GGNNCC	1 cut(s)	801
NmuCI	GTSAC	3 cut(s)	146, 232, 339
NsbI	TGCGCA	1 cut(s)	125
NspI	RCATGY	1 cut(s)	44
NspV	TTCGAA	1 cut(s)	791
OliI	CACNNNNGTG	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	831
PagI	TCATGA	1 cut(s)	577
PaqCI	CACCTGC	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	793
PkrI	GCNGC	5 cut(s)	268, 510, 645, 670, 814
PleI	GAGTC	2 cut(s)	166, 448
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
PpsI	GAGTC	2 cut(s)	166, 448
Ppu21I	YACGTR	1 cut(s)	151
Psp6I	CCWGG	4 cut(s)	52, 462, 619, 671
PspCI	CACGTG	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	4 cut(s)	52, 462, 619, 671
PspN4I	GGNNCC	1 cut(s)	801
PspPI	GGNCC	1 cut(s)	623
PspXI	VCTCGAGB	1 cut(s)	831
PstNI	CAGNNNCTG	1 cut(s)	15
PsuI	RGATCY	3 cut(s)	332, 569, 731
RsaI	GTAC	2 cut(s)	258, 543
RsaNI	GTAC	2 cut(s)	257, 542
RseI	CAYNNNNRTG	2 cut(s)	177, 230
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	5 cut(s)	267, 509, 644, 669, 813
Sau3AI	GATC	5 cut(s)	332, 345, 356, 569, 731
Sau96I	GGNCC	1 cut(s)	623
ScaI	AGTACT	1 cut(s)	543
SchI	GAGTC	2 cut(s)	167, 449
ScrFI	CCNGG	4 cut(s)	54, 464, 621, 673
SduI	GDGCHC	3 cut(s)	197, 227, 438
SexAI	ACCWGGT	2 cut(s)	52, 619
SfaNI	GCATC	4 cut(s)	111, 437, 630, 655
Sfr274I	CTCGAG	1 cut(s)	831
SfuI	TTCGAA	1 cut(s)	791
SinI	GGWCC	1 cut(s)	623
SlaI	CTCGAG	1 cut(s)	831
SmiMI	CAYNNNNRTG	2 cut(s)	177, 230
SmlI	CTYRAG	2 cut(s)	71, 831
SmoI	CTYRAG	2 cut(s)	71, 831
Sse9I	AATT	2 cut(s)	325, 654
SspMI	CTAG	2 cut(s)	480, 735
StyD4I	CCNGG	4 cut(s)	52, 462, 619, 671
StyI	CCWWGG	3 cut(s)	197, 471, 564
TaaI	ACNGT	2 cut(s)	17, 521
TaiI	ACGT	3 cut(s)	153, 426, 744
TaqI	TCGA	2 cut(s)	791, 832
TasI	AATT	2 cut(s)	325, 654
TatI	WGTACW	2 cut(s)	256, 541
TfiI	GAWTC	1 cut(s)	793
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	3 cut(s)	146, 232, 339
TseI	GCWGC	5 cut(s)	266, 508, 643, 668, 812
Tsp45I	GTSAC	3 cut(s)	146, 232, 339
TspDTI	ATGAA	4 cut(s)	189, 195, 566, 812
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	623
XbaI	TCTAGA	1 cut(s)	479
XceI	RCATGY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	2 cut(s)	633, 835
XhoI	CTCGAG	1 cut(s)	831
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	2 cut(s)	480, 735
ZrmI	AGTACT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.