Rroxscaffold_5G00352020
ERF Family

Belongs to the protein kinase superfamily. Tyr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
28828503 .. 28834762
6260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352020.1

Sequence Viewer

Length: 1125 bp
ATGGAGGGCAGAGACTGTCGTAGCCGTGGTTTAGTGGCACATGCCCCTCCCCCTGGTTACTTTGTTAGACTTGAGAATACAAGCGCTGACGACGATTTTTATTTGAGGAAGAAAGTCAGGATGCGCAGGTGGCTTTGTTGTTCTTGTCACGTGGAGGAGTCTTATTCAGCACATGAAAATGAACACCTGAAGAGCCCAAGAAGTTATGATGGGAACAATAAGGGCACTAAGGTGTCCACTCCTTTGAAGTCTGATGTACAAAAGGCAGCACCACCTGTTGAAGTCCCTCCATTGTCTCTGGAGGAGCTGAAAGAGAAGACTGACAATTTTGGATCTAAATCATTGATCGGCGAAGGATCATATGGGAGAGTATACTATGCAAGCATGGATGATGGTAAAGCTGTTGCCGTCAAGAAGCTTGACGTTGCATCCGAGCCCGAGTCAAATGTTGAGTTTCTGACCCAGGTTTCCATGGTTTCTAGACTGAAGCACGACAATCTTGTTGAGCTGCTTGGTTACTGTGTTGAAGGAAGTCTGCGAGTGCTTGCGTATGAGTTTGCCACCATGGGATCTCTGCATGACATATTGCATGGTAGAAAGGGCGTTCAAGGGGCGCAACCTGGTCCAACACTTGACTGGATGCAGCGTGTGAGAATTGCAGTTGATGCAGCCAGGGATTTCAAAGCCAAGATAGCAGATTTTAATCTTTCAAATCAGGCTCCTGATATGGCTGCTCGTCTTCATTCCACTCGAGTTTTGGGAACTTTTGGTTATCATGCTCCAGAGTATGCAATGACTGGTCAATTGACACAGAAGAGTGATGTCTACAGCTTTGGAGTAGTTCTTCTAGAGCTTCTGACTGGGAGGAAACCTGTCGATCATACAATGCCCCGTGGACAGCAGAGTCTTGTGACTTGGGCTACTCCAAGATTGAGTGAAGATAAGGTTAAACAATGTGTAGATCCTAAGCTGAAGGGAGAATATCCTCCGAAAGGAGTCGCAAAGCTAGCAGCTGTGGCAGCTTTGTGTGTACAATATGAAGCTGAGTTCCGGCCAAATATGAGCATTGTTGTTAAGGCGCTACAACCGCTTCTAAAGCCACCTGCACCAGCTCCAGAGTCGTGA

Protein Analysis

374

Amino Acids

41.33

Weight (kDa)

8.52

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 113 - 202 2.6e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 114 - 224 8.4e-15 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 226 - 361 8.4e-16 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 228 - 298 3.4e-11 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 117, 1111
AasI GACNNNNNNGTC 1 cut(s) 903
Acc16I TGCGCA 1 cut(s) 125
Acc36I ACCTGC 2 cut(s) 117, 1111
AccI GTMKAC 2 cut(s) 372, 825
AciI CCGC 1 cut(s) 1088
AclWI GGATC 4 cut(s) 340, 364, 577, 956
AcoI YGGCCR 1 cut(s) 1052
AcuI CTGAAG 3 cut(s) 209, 506, 992
AcvI CACGTG 1 cut(s) 151
AfaI GTAC 2 cut(s) 258, 1032
AfeI AGCGCT 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 53, 992
AgsI TTSAA 6 cut(s) 247, 281, 527, 608, 682, 711
AjnI CCWGG 4 cut(s) 52, 462, 619, 671
AleI CACNNNNGTG 1 cut(s) 230
Alw26I GTCTC 2 cut(s) 6, 300
AlwI GGATC 4 cut(s) 340, 364, 577, 956
AlwNI CAGNNNCTG 1 cut(s) 15
Ama87I CYCGRG 2 cut(s) 437, 750
Aor51HI AGCGCT 1 cut(s) 85
AoxI GGCC 1 cut(s) 1052
ApeKI GCWGC 7 cut(s) 266, 508, 643, 668, 731, 1010, 1019
AspLEI GCGC 4 cut(s) 86, 126, 616, 1081
AspS9I GGNCC 1 cut(s) 623
AsuNHI GCTAGC 1 cut(s) 1006
AvaI CYCGRG 2 cut(s) 437, 750
AvaII GGWCC 1 cut(s) 623
BaeGI GKGCMC 1 cut(s) 227
BanII GRGCYC 2 cut(s) 197, 438
BbrPI CACGTG 1 cut(s) 151
BbsI GAAGAC 2 cut(s) 323, 731
BbvI GCAGC 7 cut(s) 278, 495, 655, 680, 718, 1022, 1031
BccI CCATC 2 cut(s) 203, 386
BceAI ACGGC 2 cut(s) 9, 392
BciT130I CCWGG 4 cut(s) 54, 464, 621, 673
BcoDI GTCTC 2 cut(s) 6, 300
BfaI CTAG 3 cut(s) 480, 848, 1007
BfmI CTRYAG 1 cut(s) 826
BfoI RGCGCY 2 cut(s) 87, 1082
BfuAI ACCTGC 2 cut(s) 117, 1111
BisI GCNGC 7 cut(s) 267, 509, 644, 669, 732, 1011, 1020
BlsI GCNGC 7 cut(s) 268, 510, 645, 670, 733, 1012, 1021
Bme1390I CCNGG 4 cut(s) 54, 464, 621, 673
Bme18I GGWCC 1 cut(s) 623
BmeT110I CYCGRG 2 cut(s) 437, 750
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 4 cut(s) 54, 464, 621, 673
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 4 cut(s) 111, 437, 630, 655
BmtI GCTAGC 1 cut(s) 1010
BmuI ACTGGG 1 cut(s) 870
BpiI GAAGAC 2 cut(s) 323, 731
BpmI CTGGAG 3 cut(s) 320, 765, 1098
Bpu10I CCTNAGC 1 cut(s) 966
BpuEI CTTGAG 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 151
BsaBI GATNNNNATC 2 cut(s) 337, 702
BsaJI CCNNGG 7 cut(s) 25, 52, 462, 471, 564, 672, 892
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 992
Bse1I ACTGG 3 cut(s) 641, 802, 865
Bse3DI GCAATG 1 cut(s) 798
Bse8I GATNNNNATC 2 cut(s) 337, 702
BseBI CCWGG 4 cut(s) 54, 464, 621, 673
BseDI CCNNGG 7 cut(s) 25, 52, 462, 471, 564, 672, 892
BseGI GGATG 4 cut(s) 126, 394, 428, 645
BseJI GATNNNNATC 2 cut(s) 337, 702
BseLI CCNNNNNNNGG 2 cut(s) 53, 992
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 1 cut(s) 1035
BseNI ACTGG 3 cut(s) 641, 802, 865
BseRI GAGGAG 2 cut(s) 170, 317
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 7 cut(s) 278, 495, 655, 680, 718, 1022, 1031
BsgI GTGCAG 1 cut(s) 1089
BshFI GGCC 1 cut(s) 1054
BsiHKCI CYCGRG 2 cut(s) 437, 750
BsiSI CCGG 1 cut(s) 1051
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 2 cut(s) 53, 992
BsmAI GTCTC 2 cut(s) 6, 300
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 1 cut(s) 1054
BsoBI CYCGRG 2 cut(s) 437, 750
Bsp1286I GDGCHC 3 cut(s) 197, 227, 438
Bsp1407I TGTACA 2 cut(s) 256, 1030
Bsp143I GATC 6 cut(s) 332, 345, 356, 569, 877, 961
Bsp19I CCATGG 2 cut(s) 471, 564
BspACI CCGC 1 cut(s) 1088
BspANI GGCC 1 cut(s) 1054
BspCNI CTCAG 1 cut(s) 1036
BspLI GGNNCC 1 cut(s) 720
BspMI ACCTGC 2 cut(s) 117, 1111
BspOI GCTAGC 1 cut(s) 1010
BspPI GGATC 4 cut(s) 340, 364, 577, 956
BspQI GCTCTTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 798
BsrGI TGTACA 2 cut(s) 256, 1030
BsrI ACTGG 3 cut(s) 641, 802, 865
BssECI CCNNGG 7 cut(s) 25, 52, 462, 471, 564, 672, 892
BssMI GATC 6 cut(s) 332, 345, 356, 569, 877, 961
BssNAI GTATAC 1 cut(s) 373
BssT1I CCWWGG 2 cut(s) 471, 564
Bst1107I GTATAC 1 cut(s) 373
Bst2UI CCWGG 4 cut(s) 54, 464, 621, 673
Bst4CI ACNGT 2 cut(s) 17, 521
Bst6I CTCTTC 2 cut(s) 185, 809
BstAPI GCANNNNNTGC 1 cut(s) 665
BstAUI TGTACA 2 cut(s) 256, 1030
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 3 cut(s) 382, 546, 1008
BstDEI CTNAG 3 cut(s) 228, 966, 1044
BstDSI CCRYGG 4 cut(s) 25, 471, 564, 892
BstENI CCTNNNNNAGG 1 cut(s) 990
BstF5I GGATG 4 cut(s) 126, 394, 428, 645
BstH2I RGCGCY 2 cut(s) 87, 1082
BstHHI GCGC 4 cut(s) 86, 126, 616, 1081
BstKTI GATC 6 cut(s) 335, 348, 359, 572, 880, 964
BstMAI GTCTC 2 cut(s) 6, 300
BstMBI GATC 6 cut(s) 332, 345, 356, 569, 877, 961
BstMWI GCNNNNNNNGC 8 cut(s) 130, 665, 692, 1007, 1016, 1019, 1087, 1096
BstNI CCWGG 4 cut(s) 54, 464, 621, 673
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 4 cut(s) 52, 462, 619, 671
BstSFI CTRYAG 1 cut(s) 826
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 7 cut(s) 278, 495, 655, 680, 718, 1022, 1031
BstV2I GAAGAC 2 cut(s) 323, 731
BstX2I RGATCY 3 cut(s) 332, 569, 961
BstYI RGATCY 3 cut(s) 332, 569, 961
BstZ17I GTATAC 1 cut(s) 373
BsuRI GGCC 1 cut(s) 1054
BtgI CCRYGG 4 cut(s) 25, 471, 564, 892
BtsCI GGATG 4 cut(s) 126, 394, 428, 645
BveI ACCTGC 2 cut(s) 117, 1111
Cac8I GCNNGC 3 cut(s) 382, 546, 1008
CaiI CAGNNNCTG 1 cut(s) 15
CfoI GCGC 4 cut(s) 86, 126, 616, 1081
Cfr13I GGNCC 1 cut(s) 623
CsiI ACCWGGT 1 cut(s) 619
Csp6I GTAC 2 cut(s) 257, 1031
CviAII CATG 8 cut(s) 41, 173, 385, 472, 565, 578, 590, 776
CviQI GTAC 2 cut(s) 257, 1031
DdeI CTNAG 3 cut(s) 228, 966, 1044
DpnI GATC 6 cut(s) 334, 347, 358, 571, 879, 963
DpnII GATC 6 cut(s) 332, 345, 356, 569, 877, 961
DrdI GACNNNNNNGTC 1 cut(s) 903
DseDI GACNNNNNNGTC 1 cut(s) 903
EaeI YGGCCR 1 cut(s) 1052
Eam1104I CTCTTC 2 cut(s) 185, 809
EarI CTCTTC 2 cut(s) 185, 809
Eco130I CCWWGG 2 cut(s) 471, 564
Eco24I GRGCYC 2 cut(s) 197, 438
Eco47I GGWCC 1 cut(s) 623
Eco47III AGCGCT 1 cut(s) 85
Eco57I CTGAAG 3 cut(s) 209, 506, 992
Eco72I CACGTG 1 cut(s) 151
Eco88I CYCGRG 2 cut(s) 437, 750
EcoNI CCTNNNNNAGG 1 cut(s) 990
EcoRII CCWGG 4 cut(s) 52, 462, 619, 671
EcoT14I CCWWGG 2 cut(s) 471, 564
EcoT38I GRGCYC 2 cut(s) 197, 438
ErhI CCWWGG 2 cut(s) 471, 564
FaeI CATG 8 cut(s) 44, 176, 388, 475, 568, 581, 593, 779
FaqI GGGAC 1 cut(s) 269
FatI CATG 8 cut(s) 40, 172, 384, 471, 564, 577, 589, 775
FauNDI CATATG 1 cut(s) 361
FblI GTMKAC 2 cut(s) 372, 825
Fnu4HI GCNGC 7 cut(s) 267, 509, 644, 669, 732, 1011, 1020
FokI GGATG 4 cut(s) 133, 401, 415, 652
FriOI GRGCYC 2 cut(s) 197, 438
Fsp4HI GCNGC 7 cut(s) 267, 509, 644, 669, 732, 1011, 1020
FspBI CTAG 3 cut(s) 480, 848, 1007
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 4 cut(s) 85, 125, 615, 1080
GluI GCNGC 7 cut(s) 267, 509, 644, 669, 732, 1011, 1020
GsuI CTGGAG 3 cut(s) 320, 765, 1098
HaeII RGCGCY 2 cut(s) 87, 1082
HaeIII GGCC 1 cut(s) 1054
HapII CCGG 1 cut(s) 1051
HhaI GCGC 4 cut(s) 86, 126, 616, 1081
Hin1II CATG 8 cut(s) 44, 176, 388, 475, 568, 581, 593, 779
Hin6I GCGC 4 cut(s) 84, 124, 614, 1079
HinP1I GCGC 4 cut(s) 84, 124, 614, 1079
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 5 cut(s) 158, 440, 904, 996, 1118
HpaII CCGG 1 cut(s) 1051
Hpy166II GTNNAC 5 cut(s) 237, 373, 826, 896, 1031
Hpy188I TCNGA 5 cut(s) 253, 433, 459, 858, 990
Hpy188III TCNNGA 9 cut(s) 118, 299, 412, 480, 722, 782, 848, 1115, 1122
Hpy8I GTNNAC 5 cut(s) 237, 373, 826, 896, 1031
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 347, 521, 967
HpyCH4III ACNGT 2 cut(s) 17, 521
HpyCH4IV ACGT 2 cut(s) 150, 423
HpyCH4V TGCA 9 cut(s) 380, 428, 577, 589, 643, 659, 668, 791, 1106
HpyF10VI GCNNNNNNNGC 8 cut(s) 130, 665, 692, 1007, 1016, 1019, 1087, 1096
HpyF3I CTNAG 3 cut(s) 228, 966, 1044
HpySE526I ACGT 2 cut(s) 150, 423
Hsp92II CATG 8 cut(s) 44, 176, 388, 475, 568, 581, 593, 779
HspAI GCGC 4 cut(s) 84, 124, 614, 1079
Kzo9I GATC 6 cut(s) 332, 345, 356, 569, 877, 961
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 4 cut(s) 304, 724, 784, 1117
Lsp1109I GCAGC 7 cut(s) 278, 495, 655, 680, 718, 1022, 1031
LweI GCATC 4 cut(s) 111, 437, 630, 655
MabI ACCWGGT 1 cut(s) 619
MaeI CTAG 3 cut(s) 480, 848, 1007
MaeII ACGT 2 cut(s) 150, 423
MaeIII GTNAC 4 cut(s) 56, 146, 515, 910
MalI GATC 6 cut(s) 334, 347, 358, 571, 879, 963
MboI GATC 6 cut(s) 332, 345, 356, 569, 877, 961
MboII GAAGA 7 cut(s) 121, 202, 328, 731, 826, 836, 950
MfeI CAATTG 1 cut(s) 803
MflI RGATCY 3 cut(s) 332, 569, 961
MhlI GDGCHC 3 cut(s) 197, 227, 438
MluCI AATT 3 cut(s) 325, 654, 803
MlyI GAGTC 4 cut(s) 167, 449, 913, 1005
MmeI TCCRAC 1 cut(s) 650
MnlI CCTC 7 cut(s) 57, 99, 148, 295, 297, 858, 996
MseI TTAA 3 cut(s) 702, 948, 1074
MslI CAYNNNNRTG 2 cut(s) 177, 230
MspA1I CMGCKG 1 cut(s) 1013
MspI CCGG 1 cut(s) 1051
MspR9I CCNGG 4 cut(s) 54, 464, 621, 673
MunI CAATTG 1 cut(s) 803
MvaI CCWGG 4 cut(s) 54, 464, 621, 673
MwoI GCNNNNNNNGC 8 cut(s) 130, 665, 692, 1007, 1016, 1019, 1087, 1096
NcoI CCATGG 2 cut(s) 471, 564
NdeI CATATG 1 cut(s) 361
NdeII GATC 6 cut(s) 332, 345, 356, 569, 877, 961
NheI GCTAGC 1 cut(s) 1006
NlaIII CATG 8 cut(s) 44, 176, 388, 475, 568, 581, 593, 779
NlaIV GGNNCC 1 cut(s) 720
NmuCI GTSAC 2 cut(s) 146, 910
NsbI TGCGCA 1 cut(s) 125
NspI RCATGY 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 230
PaeR7I CTCGAG 1 cut(s) 750
PaqCI CACCTGC 2 cut(s) 117, 1111
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PkrI GCNGC 7 cut(s) 268, 510, 645, 670, 733, 1012, 1021
PleI GAGTC 4 cut(s) 166, 448, 912, 1004
PmaCI CACGTG 1 cut(s) 151
PmlI CACGTG 1 cut(s) 151
PpsI GAGTC 4 cut(s) 166, 448, 912, 1004
Ppu21I YACGTR 1 cut(s) 151
Psp6I CCWGG 4 cut(s) 52, 462, 619, 671
PspCI CACGTG 1 cut(s) 151
PspGI CCWGG 4 cut(s) 52, 462, 619, 671
PspN4I GGNNCC 1 cut(s) 720
PspPI GGNCC 1 cut(s) 623
PspXI VCTCGAGB 1 cut(s) 750
PstNI CAGNNNCTG 1 cut(s) 15
PsuI RGATCY 3 cut(s) 332, 569, 961
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 2 cut(s) 258, 1032
RsaNI GTAC 2 cut(s) 257, 1031
RseI CAYNNNNRTG 2 cut(s) 177, 230
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 702, 948, 1074
SatI GCNGC 7 cut(s) 267, 509, 644, 669, 732, 1011, 1020
Sau3AI GATC 6 cut(s) 332, 345, 356, 569, 877, 961
Sau96I GGNCC 1 cut(s) 623
SchI GAGTC 4 cut(s) 167, 449, 913, 1005
ScrFI CCNGG 4 cut(s) 54, 464, 621, 673
SduI GDGCHC 3 cut(s) 197, 227, 438
SexAI ACCWGGT 1 cut(s) 619
SfaNI GCATC 4 cut(s) 111, 437, 630, 655
SfcI CTRYAG 1 cut(s) 826
Sfr274I CTCGAG 1 cut(s) 750
SinI GGWCC 1 cut(s) 623
SlaI CTCGAG 1 cut(s) 750
SmiMI CAYNNNNRTG 2 cut(s) 177, 230
SmlI CTYRAG 2 cut(s) 71, 750
SmoI CTYRAG 2 cut(s) 71, 750
Sse9I AATT 3 cut(s) 325, 654, 803
SsiI CCGC 1 cut(s) 1088
SspMI CTAG 3 cut(s) 480, 848, 1007
StyD4I CCNGG 4 cut(s) 52, 462, 619, 671
StyI CCWWGG 2 cut(s) 471, 564
TaaI ACNGT 2 cut(s) 17, 521
TaiI ACGT 2 cut(s) 153, 426
TaqI TCGA 2 cut(s) 751, 876
TasI AATT 3 cut(s) 325, 654, 803
TatI WGTACW 2 cut(s) 256, 1030
Tru1I TTAA 3 cut(s) 702, 948, 1074
Tru9I TTAA 3 cut(s) 702, 948, 1074
TseFI GTSAC 2 cut(s) 146, 910
TseI GCWGC 7 cut(s) 266, 508, 643, 668, 731, 1010, 1019
Tsp45I GTSAC 2 cut(s) 146, 910
TspDTI ATGAA 4 cut(s) 189, 195, 731, 1053
VpaK11BI GGWCC 1 cut(s) 623
XagI CCTNNNNNAGG 1 cut(s) 990
XbaI TCTAGA 2 cut(s) 479, 847
XceI RCATGY 1 cut(s) 44
XcmI CCANNNNNNNNNTGG 2 cut(s) 633, 754
XhoI CTCGAG 1 cut(s) 750
XmiI GTMKAC 2 cut(s) 372, 825
XspI CTAG 3 cut(s) 480, 848, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.