Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Reverse (-)

22123982 .. 22126630

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCGGCGAATGGGCTAATGGCGGCATCTAGTGTGTTTCTCCACCGTCCTGTACATCCCCATTTCTCGTTCTCTTCTAGAACGAATCAAATGGTTCCACTCGGCTTCAAAGGCCGTGTTAGTTTCATCGGCAATGTGAAACGCTGTTTTCCGGTGGTATTGTCAATGGGAAAGTCGGAGACTTTCGAGGAAGCTGGAAATTCCGTTGCGCCTGGTAACGGCATATCGATCATGGTGAATGGATGCAGTGGTAAAATGGGGAAAGCTGTCATCAAAGCGGCAGATTCTGCTGGAGTGAATATTGTTCCTACATCATTTGGGTCTGTTGAAGAGGCTGGCCAGACTGTTGAGGTCTGTGGAAAGGAGATTCTTGTGCATGGTCCTACTGAAAGAGAAAAGGTGCTGTCTTCAGTGTTTGAGAAGTATCCTGAACTAATTGTTGTGGACTACACAATTCCCTCTGCAGTAAATGATAATGCAGAGCTGTATGGCAAAGTAGGAGTTCCGTTCGTAATGGGAACAACTGGAGGAGACAGGACAAGATTGTATAAAACTGTCGAGGAATCAAAGATTTATGCTGTGATTTCTCCACAGATGGGTAAACAGGTTGTTGCGTTTCTTGCAGCAATGGAGATCATGTCTGAGCAGTTTCCTGGTGCATTTGCTGGTTATTCCTTAGAGGTGATGGAGTCTCATCAAGCTAGCAAATTGGATGCATCTGGTACTGCAAAAGCTGTTATTTCTTGCTTTCAGAAATTAGGCGTGTCTTACGACATGGACCAGATACAATTAATTCGAGATCCTAAGCAGCAGATTGAGGTGGTGGGTGTTCCAGAGGAGCATGTCTCGGGTCATGCTTTCCATCTTTATCACTTGACATCACCAGATAAAACTGTGTCCTTTGAGTTCCAGCACAATGTTTGCGGAAGATCAATATATGCTGAGGGTACTGTTGATGCAGTGCTATTCCTTGCCAAAAAGATCCGGTCTAAAGCAGAGAAGAGGATCTATAACATGATTGATGTCTTGAGAGAGGGAAACATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

349

Amino Acids

37.87

Weight (kDa)

6.8

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	75 - 199	2.8e-18	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	203 - 343	3.2e-16	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 23, 278, 924
AclWI	GGATC	3 cut(s)	794, 976, 1013
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	3 cut(s)	54, 724, 949
AfiI	CCNNNNNNNGG	2 cut(s)	218, 596
AgsI	TTSAA	2 cut(s)	109, 329
AjnI	CCWGG	2 cut(s)	211, 652
AluBI	AGCT	5 cut(s)	194, 266, 484, 701, 734
AluI	AGCT	5 cut(s)	194, 266, 484, 701, 734
Alw26I	GTCTC	4 cut(s)	173, 525, 696, 850
AlwI	GGATC	3 cut(s)	794, 976, 1013
AlwNI	CAGNNNCTG	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	847
AoxI	GGCC	2 cut(s)	112, 337
ApeKI	GCWGC	2 cut(s)	623, 808
ApoI	RAATTY	1 cut(s)	199
AseI	ATTAAT	1 cut(s)	791
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	380, 778
AsuHPI	GGTGA	3 cut(s)	247, 694, 873
AsuNHI	GCTAGC	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	847
AvaII	GGWCC	2 cut(s)	380, 778
BalI	TGGCCA	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	2 cut(s)	635, 820
BccI	CCATC	3 cut(s)	589, 679, 870
BceAI	ACGGC	2 cut(s)	99, 235
BciT130I	CCWGG	2 cut(s)	213, 654
BciVI	GTATCC	1 cut(s)	435
BcoDI	GTCTC	4 cut(s)	173, 525, 696, 850
BfaI	CTAG	3 cut(s)	30, 78, 702
BfmI	CTRYAG	1 cut(s)	462
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	5 cut(s)	6, 24, 279, 624, 809
BlsI	GCNGC	5 cut(s)	7, 25, 280, 625, 810
Bme1390I	CCNGG	2 cut(s)	213, 654
Bme18I	GGWCC	2 cut(s)	380, 778
BmeT110I	CYCGRG	1 cut(s)	847
BmgT120I	GGNCC	2 cut(s)	380, 778
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	213, 654
BmsI	GCATC	5 cut(s)	35, 233, 703, 725, 946
BmtI	GCTAGC	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	830, 862
BpmI	CTGGAG	2 cut(s)	312, 546
Bpu10I	CCTNAGC	2 cut(s)	804, 942
BpuEI	CTTGAG	1 cut(s)	1048
Bsa29I	ATCGAT	1 cut(s)	227
BsaWI	WCCGGW	2 cut(s)	151, 984
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 596
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	2 cut(s)	139, 633
BseBI	CCWGG	2 cut(s)	213, 654
BseCI	ATCGAT	1 cut(s)	227
BseGI	GGATG	3 cut(s)	55, 248, 718
BseLI	CCNNNNNNNGG	2 cut(s)	218, 596
BseMI	GCAATG	2 cut(s)	139, 633
BseMII	CTCAG	2 cut(s)	633, 933
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	2 cut(s)	543, 851
BseXI	GCAGC	2 cut(s)	635, 820
BshFI	GGCC	2 cut(s)	114, 339
BshVI	ATCGAT	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	847
BsiSI	CCGG	2 cut(s)	152, 985
BslI	CCNNNNNNNGG	2 cut(s)	218, 596
BsmAI	GTCTC	4 cut(s)	173, 525, 696, 850
BsnI	GGCC	2 cut(s)	114, 339
BsoBI	CYCGRG	1 cut(s)	847
Bsp1407I	TGTACA	1 cut(s)	52
Bsp143I	GATC	6 cut(s)	228, 633, 799, 929, 981, 1005
BspACI	CCGC	4 cut(s)	5, 23, 278, 924
BspANI	GGCC	2 cut(s)	114, 339
BspCNI	CTCAG	2 cut(s)	634, 934
BspDI	ATCGAT	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	705
BspPI	GGATC	3 cut(s)	794, 976, 1013
BsrDI	GCAATG	2 cut(s)	139, 633
BsrGI	TGTACA	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	529
BssMI	GATC	6 cut(s)	228, 633, 799, 929, 981, 1005
Bst2UI	CCWGG	2 cut(s)	213, 654
Bst4CI	ACNGT	5 cut(s)	47, 346, 556, 895, 952
Bst6I	CTCTTC	3 cut(s)	79, 324, 995
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	337, 703
BstDEI	CTNAG	4 cut(s)	642, 676, 804, 942
BstF5I	GGATG	3 cut(s)	55, 248, 718
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	6 cut(s)	231, 636, 802, 932, 984, 1008
BstMAI	GTCTC	4 cut(s)	173, 525, 696, 850
BstMBI	GATC	6 cut(s)	228, 633, 799, 929, 981, 1005
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 287, 620
BstNI	CCWGG	2 cut(s)	213, 654
BstNSI	RCATGY	2 cut(s)	845, 1045
BstSCI	CCNGG	2 cut(s)	211, 652
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	635, 820
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	3 cut(s)	799, 981, 1005
BstYI	RGATCY	3 cut(s)	799, 981, 1005
Bsu15I	ATCGAT	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	114, 339
BsuTUI	ATCGAT	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	55, 248, 718
BtsI	GCAGTG	2 cut(s)	253, 966
BtsIMutI	CAGTG	3 cut(s)	253, 417, 966
Cac8I	GCNNGC	2 cut(s)	337, 703
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	380, 778
ClaI	ATCGAT	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	53, 723, 948
CviAII	CATG	8 cut(s)	232, 377, 637, 775, 842, 854, 1015, 1042
CviQI	GTAC	3 cut(s)	53, 723, 948
DdeI	CTNAG	4 cut(s)	642, 676, 804, 942
DpnI	GATC	6 cut(s)	230, 635, 801, 931, 983, 1007
DpnII	GATC	6 cut(s)	228, 633, 799, 929, 981, 1005
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	3 cut(s)	79, 324, 995
EarI	CTCTTC	3 cut(s)	79, 324, 995
Eco47I	GGWCC	2 cut(s)	380, 778
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	211, 652
EcoT22I	ATGCAT	1 cut(s)	718
FaeI	CATG	8 cut(s)	235, 380, 640, 778, 845, 857, 1018, 1045
FatI	CATG	8 cut(s)	231, 376, 636, 774, 841, 853, 1014, 1041
Fnu4HI	GCNGC	5 cut(s)	6, 24, 279, 624, 809
FokI	GGATG	3 cut(s)	42, 255, 725
Fsp4HI	GCNGC	5 cut(s)	6, 24, 279, 624, 809
FspBI	CTAG	3 cut(s)	30, 78, 702
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	5 cut(s)	6, 24, 279, 624, 809
GsuI	CTGGAG	2 cut(s)	312, 546
HaeIII	GGCC	2 cut(s)	114, 339
HapII	CCGG	2 cut(s)	152, 985
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	8 cut(s)	235, 380, 640, 778, 845, 857, 1018, 1045
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	5 cut(s)	85, 284, 367, 563, 689
HpaII	CCGG	2 cut(s)	152, 985
HphI	GGTGA	3 cut(s)	247, 694, 873
Hpy166II	GTNNAC	2 cut(s)	445, 602
Hpy188I	TCNGA	3 cut(s)	178, 643, 753
Hpy188III	TCNNGA	5 cut(s)	78, 428, 797, 833, 1027
Hpy8I	GTNNAC	2 cut(s)	445, 602
HpyCH4III	ACNGT	5 cut(s)	47, 346, 556, 895, 952
HpyCH4V	TGCA	9 cut(s)	246, 376, 464, 479, 623, 659, 716, 728, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 287, 620
HpyF3I	CTNAG	4 cut(s)	642, 676, 804, 942
Hsp92II	CATG	8 cut(s)	235, 380, 640, 778, 845, 857, 1018, 1045
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	6 cut(s)	228, 633, 799, 929, 981, 1005
LmnI	GCTCC	1 cut(s)	838
Lsp1109I	GCAGC	2 cut(s)	635, 820
LweI	GCATC	5 cut(s)	35, 233, 703, 725, 946
MaeI	CTAG	3 cut(s)	30, 78, 702
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	6 cut(s)	230, 635, 801, 931, 983, 1007
MboI	GATC	6 cut(s)	228, 633, 799, 929, 981, 1005
MboII	GAAGA	5 cut(s)	66, 341, 399, 939, 1012
MflI	RGATCY	3 cut(s)	799, 981, 1005
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	7 cut(s)	199, 435, 453, 707, 755, 788, 792
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	156
Mox20I	TGGCCA	1 cut(s)	339
Mph1103I	ATGCAT	1 cut(s)	718
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	1 cut(s)	791
Msp20I	TGGCCA	1 cut(s)	339
MspI	CCGG	2 cut(s)	152, 985
MspR9I	CCNGG	2 cut(s)	213, 654
MvaI	CCWGG	2 cut(s)	213, 654
MwoI	GCNNNNNNNGC	3 cut(s)	111, 287, 620
NdeII	GATC	6 cut(s)	228, 633, 799, 929, 981, 1005
NheI	GCTAGC	1 cut(s)	701
NlaIII	CATG	8 cut(s)	235, 380, 640, 778, 845, 857, 1018, 1045
NlaIV	GGNNCC	1 cut(s)	96
NmeAIII	GCCGAG	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	718
NspI	RCATGY	2 cut(s)	845, 1045
PfeI	GAWTC	4 cut(s)	85, 284, 367, 563
PkrI	GCNGC	5 cut(s)	7, 25, 280, 625, 810
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PshBI	ATTAAT	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	211, 652
PspGI	CCWGG	2 cut(s)	211, 652
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	380, 778
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	3 cut(s)	799, 981, 1005
RsaI	GTAC	3 cut(s)	54, 724, 949
RsaNI	GTAC	3 cut(s)	53, 723, 948
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	5 cut(s)	6, 24, 279, 624, 809
Sau3AI	GATC	6 cut(s)	228, 633, 799, 929, 981, 1005
Sau96I	GGNCC	2 cut(s)	380, 778
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	2 cut(s)	213, 654
SfaNI	GCATC	5 cut(s)	35, 233, 703, 725, 946
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	2 cut(s)	380, 778
SmlI	CTYRAG	1 cut(s)	1027
SmoI	CTYRAG	1 cut(s)	1027
Sse9I	AATT	7 cut(s)	199, 435, 453, 707, 755, 788, 792
SsiI	CCGC	4 cut(s)	5, 23, 278, 924
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	3 cut(s)	30, 78, 702
StyD4I	CCNGG	2 cut(s)	211, 652
TaaI	ACNGT	5 cut(s)	47, 346, 556, 895, 952
TaqI	TCGA	4 cut(s)	186, 227, 558, 796
TasI	AATT	7 cut(s)	199, 435, 453, 707, 755, 788, 792
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	3 cut(s)	8, 26, 281
TfiI	GAWTC	4 cut(s)	85, 284, 367, 563
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TscAI	CASTG	3 cut(s)	253, 417, 966
TseI	GCWGC	2 cut(s)	623, 808
TspDTI	ATGAA	1 cut(s)	115
TspGWI	ACGGA	2 cut(s)	193, 495
TspRI	CASTG	3 cut(s)	253, 417, 966
VpaK11BI	GGWCC	2 cut(s)	380, 778
VspI	ATTAAT	1 cut(s)	791
XapI	RAATTY	1 cut(s)	199
XbaI	TCTAGA	1 cut(s)	77
XceI	RCATGY	2 cut(s)	845, 1045
XspI	CTAG	3 cut(s)	30, 78, 702
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.