Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Forward (+)

54814087 .. 54815253

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0453400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGGGACGAAGAAGCTCGCCGGAAGAGAACCAGGTGCCTGGCATGCATAGCTTTCGGGGTGATAGCGCAGACGATAATCATCGTCCTCTTTGTGGTGATAGTCATGCGCGTCAAGACCCCGAAAGTCCGTTTAGAATCCGTCGGCGTCACCACTCTCACCACAGGCAACGCCTCCTTCAAAGCCGATCTCAACGCGCTTGTCACAGTCAAGAACAAGAACTTTGGCCACTACAAGTTCGACAGCGCCAAGGCGACTTTCAGCTACAAAGGCACTGATATAGGAGAGGGCACCATATCCAAGGACAAAGCCAAGGCGAAGAAGACCAAGAAGATCAATGTGACGGTGTCGTTGAACTCGAACAAGATCACAACGAGTGATATTAGCTCCGGGAGTGTGACGTTGACGGCGTACGCTAAGTTGGATGGTAAGGTTCATCTTCTGAACATTATCAAGAAGAAGAAATCTTCCGAGTTGAACTGCACCATACATGTGGATACCAAGGCCAAAGCGGTACAAGTTTTGAGTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

178

Amino Acids

19.41

Weight (kDa)

10.05

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	68 - 162	4e-09	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	36, 290
AccII	CGCG	2 cut(s)	111, 197
AciI	CCGC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	413, 516
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	181, 355, 478
AjnI	CCWGG	2 cut(s)	32, 39
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	4 cut(s)	17, 53, 264, 387
AluI	AGCT	4 cut(s)	17, 53, 264, 387
AoxI	GGCC	2 cut(s)	226, 504
AspLEI	GCGC	4 cut(s)	70, 111, 199, 248
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	4 cut(s)	73, 109, 142, 151
BaeGI	GKGCMC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	228
BanI	GGYRCC	2 cut(s)	36, 290
BbsI	GAAGAC	1 cut(s)	329
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	1 cut(s)	423
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	2 cut(s)	34, 41
BciVI	GTATCC	1 cut(s)	490
BcnI	CCSGG	1 cut(s)	391
BfoI	RGCGCY	1 cut(s)	249
BfuI	GTATCC	1 cut(s)	490
Bme1390I	CCNGG	3 cut(s)	34, 41, 391
BmiI	GGNNCC	2 cut(s)	38, 292
BmrFI	CCNGG	3 cut(s)	34, 41, 391
BpiI	GAAGAC	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	4 cut(s)	249, 300, 312, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	2 cut(s)	34, 41
BseDI	CCNNGG	4 cut(s)	249, 300, 312, 501
BseGI	GGATG	1 cut(s)	430
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	466
Bsh1236I	CGCG	2 cut(s)	111, 197
BshFI	GGCC	2 cut(s)	228, 506
BshNI	GGYRCC	2 cut(s)	36, 290
BsiSI	CCGG	2 cut(s)	22, 390
BsiWI	CGTACG	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	228, 506
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	3 cut(s)	187, 333, 366
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	2 cut(s)	228, 506
BspFNI	CGCG	2 cut(s)	111, 197
BspLI	GGNNCC	2 cut(s)	38, 292
BspT107I	GGYRCC	2 cut(s)	36, 290
BssECI	CCNNGG	4 cut(s)	249, 300, 312, 501
BssMI	GATC	3 cut(s)	187, 333, 366
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	4 cut(s)	249, 300, 312, 501
Bst2UI	CCWGG	2 cut(s)	34, 41
Bst4CI	ACNGT	2 cut(s)	208, 346
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	19, 46
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	2 cut(s)	111, 197
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	4 cut(s)	70, 111, 199, 248
BstKTI	GATC	3 cut(s)	190, 336, 369
BstMBI	GATC	3 cut(s)	187, 333, 366
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 50, 270
BstNI	CCWGG	2 cut(s)	34, 41
BstNSI	RCATGY	2 cut(s)	48, 494
BstSCI	CCNGG	3 cut(s)	32, 39, 389
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	2 cut(s)	111, 197
BstV2I	GAAGAC	1 cut(s)	329
BstXI	CCANNNNNNTGG	2 cut(s)	40, 493
BsuI	GTATCC	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	228, 506
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	19, 46
CfoI	GCGC	4 cut(s)	70, 111, 199, 248
CseI	GACGC	2 cut(s)	100, 136
CsiI	ACCWGGT	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	412, 515
CviAII	CATG	3 cut(s)	45, 106, 491
CviJI	RGCY	8 cut(s)	17, 53, 185, 228, 264, 311, 387, 506
CviKI_1	RGCY	8 cut(s)	17, 53, 185, 228, 264, 311, 387, 506
CviQI	GTAC	2 cut(s)	412, 515
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	3 cut(s)	189, 335, 368
DpnII	GATC	3 cut(s)	187, 333, 366
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	4 cut(s)	249, 300, 312, 501
EcoRII	CCWGG	2 cut(s)	32, 39
EcoT14I	CCWWGG	4 cut(s)	249, 300, 312, 501
EcoT22I	ATGCAT	1 cut(s)	50
ErhI	CCWWGG	4 cut(s)	249, 300, 312, 501
FaeI	CATG	3 cut(s)	48, 109, 494
FaiI	YATR	7 cut(s)	46, 50, 107, 281, 296, 488, 492
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	3 cut(s)	44, 105, 490
FokI	GGATG	1 cut(s)	437
GlaI	GCGC	4 cut(s)	69, 110, 198, 247
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	228, 506
HapII	CCGG	2 cut(s)	22, 390
HgaI	GACGC	2 cut(s)	100, 136
HhaI	GCGC	4 cut(s)	70, 111, 199, 248
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	48, 109, 494
Hin6I	GCGC	4 cut(s)	68, 109, 197, 246
HinP1I	GCGC	4 cut(s)	68, 109, 197, 246
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	2 cut(s)	22, 390
HphI	GGTGA	4 cut(s)	73, 109, 142, 151
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	2 cut(s)	444, 472
Hpy188III	TCNNGA	3 cut(s)	115, 211, 454
Hpy8I	GTNNAC	1 cut(s)	405
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	2 cut(s)	208, 346
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	3 cut(s)	48, 483, 531
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 50, 270
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	401
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	48, 109, 494
HspAI	GCGC	4 cut(s)	68, 109, 197, 246
Kzo9I	GATC	3 cut(s)	187, 333, 366
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	7 cut(s)	19, 26, 35, 46, 53, 150, 403
MabI	ACCWGGT	1 cut(s)	32
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	4 cut(s)	148, 202, 340, 397
MalI	GATC	3 cut(s)	189, 335, 368
MboI	GATC	3 cut(s)	187, 333, 366
MboII	GAAGA	9 cut(s)	23, 37, 331, 334, 343, 431, 459, 469, 472
MhlI	GDGCHC	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	228
MluNI	TGGCCA	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	3 cut(s)	98, 184, 280
Mox20I	TGGCCA	1 cut(s)	228
Mph1103I	ATGCAT	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	228
MspI	CCGG	2 cut(s)	22, 390
MspR9I	CCNGG	3 cut(s)	34, 41, 391
MvaI	CCWGG	2 cut(s)	34, 41
MvnI	CGCG	2 cut(s)	111, 197
MwoI	GCNNNNNNNGC	3 cut(s)	45, 50, 270
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	3 cut(s)	187, 333, 366
NlaIII	CATG	3 cut(s)	48, 109, 494
NlaIV	GGNNCC	2 cut(s)	38, 292
NmuCI	GTSAC	4 cut(s)	148, 202, 340, 397
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	2 cut(s)	48, 494
PaeI	GCATGC	1 cut(s)	48
PciI	ACATGT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	2 cut(s)	356, 407
PfeI	GAWTC	1 cut(s)	137
Pfl23II	CGTACG	1 cut(s)	411
PflFI	GACNNNGTC	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	389
PscI	ACATGT	1 cut(s)	490
Psp6I	CCWGG	2 cut(s)	32, 39
PspGI	CCWGG	2 cut(s)	32, 39
PspLI	CGTACG	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	38, 292
PsyI	GACNNNGTC	1 cut(s)	346
RsaI	GTAC	2 cut(s)	413, 516
RsaNI	GTAC	2 cut(s)	412, 515
RseI	CAYNNNNRTG	1 cut(s)	491
Sau3AI	GATC	3 cut(s)	187, 333, 366
ScrFI	CCNGG	3 cut(s)	34, 41, 391
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	7 cut(s)	19, 38, 55, 266, 389, 404, 435
SexAI	ACCWGGT	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	491
SphI	GCATGC	1 cut(s)	48
SsiI	CCGC	1 cut(s)	512
StyD4I	CCNGG	3 cut(s)	32, 39, 389
StyI	CCWWGG	4 cut(s)	249, 300, 312, 501
TaaI	ACNGT	2 cut(s)	208, 346
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	2 cut(s)	240, 359
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	4 cut(s)	148, 202, 340, 397
Tsp45I	GTSAC	4 cut(s)	148, 202, 340, 397
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	2 cut(s)	119, 130
TspRI	CASTG	1 cut(s)	280
Tth111I	GACNNNGTC	1 cut(s)	346
XceI	RCATGY	2 cut(s)	48, 494
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.