Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Reverse (-)

43280479 .. 43281771

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG329900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCGTCCATGCTGAATGCCCCACCCAATTGTATCTCTGTGAAGCCACAAAAGCCGACACTGCTGGCTGGAACTGCAACCAGTAGAGGATTGGGTGCTACTCGGAGTATCAATCTAAAGCAAAGACTTCCATCACCAGCGATGATGATGATCCCAAAGATGTCAATTTCAGCCCTACCCCTTGACAACCCTACTAAGTCCAACAACAAGTTTGACATTCCTATCATGGTAAACGGTTGTAATGGTAAAATGGGGAAGGCCATTATCAGTGCAGCGGAGTCTGCTGGACTCGATGTGGTTCCCGTCTCCTTTGGATCTGCTCAAGAGTCTGGCCAAGCCATCCAAGTCGGCACAAAGGAGATTCTAGTCCATGGTCCTTCTGAAAGAGAAAGCATACTTGAATCTCTTCTTGTCAAATATCCCAATTTGATTGTGGTCGACTTCACTGTCCCTTCTGCAGTGAACGATAATGCAGAGCTATATTGCAGAGTCGGAGTGCCCTTTGTGATGGGAACAACCGGCAGAGATAGGGATCAGTTGTATAAGACTGTAGAAGACTCAAAAATCTATGCAGTAATTTCCCCTCAAATGGGGAAACAGGTCTTTGCATTTCTTGCAACCATGGAAATTATGGCTGAGCAATTTCCTGGAGCTTTCTTTGGGTATTCCTTGCAGGTTATGGAATCTCATCAAGCAAGTAAACTTGACACATCTGGAACTGCTAAGGCTGTTATCTCTTGCTTCCAGAAGTTGGGAGTGTCTTTTGATATGGATCAGATCCAATTGATAAGGGATCCCCAGAAACAGCTAGAGATGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTATCATCTGACTTCACCCGATCAAACAGTTTCTTTTCAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAGTTGATTTTGTAATTTTCCTTGCTAAGAAGGTTCATTCAAAGGCAGACAAGCGGATATACGATATGAGGGATGTCCTGCGAGAGGGTAACATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

347

Amino Acids

37.97

Weight (kDa)

7.66

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	73 - 197	1.8e-19	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	203 - 341	2.5e-13	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	664
AccB7I	CCANNNNNTGG	1 cut(s)	751
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	2 cut(s)	275, 997
AclWI	GGATC	7 cut(s)	145, 322, 540, 772, 780, 788, 801
AcoI	YGGCCR	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	943
AfiI	CCNNNNNNNGG	4 cut(s)	589, 590, 751, 1027
AgsI	TTSAA	2 cut(s)	401, 984
AjnI	CCWGG	1 cut(s)	646
AluBI	AGCT	3 cut(s)	478, 653, 808
AluI	AGCT	3 cut(s)	478, 653, 808
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	7 cut(s)	145, 322, 540, 772, 780, 788, 801
AoxI	GGCC	2 cut(s)	258, 331
ApeKI	GCWGC	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	126, 867
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	501
BalI	TGGCCA	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	793
BbsI	GAAGAC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	4 cut(s)	139, 347, 502, 808
BciT130I	CCWGG	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	2 cut(s)	365, 809
BfmI	CTRYAG	2 cut(s)	456, 549
BfuAI	ACCTGC	1 cut(s)	664
BisI	GCNGC	1 cut(s)	273
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	648
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	300, 795
BmrFI	CCNGG	1 cut(s)	648
BpiI	GAAGAC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	669
Bpu10I	CCTNAGC	1 cut(s)	723
Bpu1102I	GCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	306
BsaBI	GATNNNNATC	3 cut(s)	149, 531, 771
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	370, 621
BsaXI	ACNNNNNCTCC	2 cut(s)	824, 854
Bsc4I	CCNNNNNNNGG	4 cut(s)	589, 590, 751, 1027
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	81
Bse8I	GATNNNNATC	3 cut(s)	149, 531, 771
BseBI	CCWGG	1 cut(s)	648
BseDI	CCNNGG	2 cut(s)	370, 621
BseGI	GGATG	2 cut(s)	339, 1021
BseJI	GATNNNNATC	3 cut(s)	149, 531, 771
BseLI	CCNNNNNNNGG	4 cut(s)	589, 590, 751, 1027
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	845
BseSI	GKGCMC	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	260, 333
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	4 cut(s)	589, 590, 751, 1027
BsmAI	GTCTC	1 cut(s)	310
BsmBI	CGTCTC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	260, 333
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	8 cut(s)	150, 314, 532, 772, 777, 793, 880, 923
Bsp1720I	GCTNAGC	1 cut(s)	636
Bsp19I	CCATGG	2 cut(s)	370, 621
BspACI	CCGC	2 cut(s)	275, 997
BspANI	GGCC	2 cut(s)	260, 333
BspCNI	CTCAG	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	300, 795
BspMAI	CTGCAG	1 cut(s)	460
BspMI	ACCTGC	1 cut(s)	664
BspPI	GGATC	7 cut(s)	145, 322, 540, 772, 780, 788, 801
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	370, 621
BssMI	GATC	8 cut(s)	150, 314, 532, 772, 777, 793, 880, 923
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	370, 621
Bst2UI	CCWGG	1 cut(s)	648
Bst4CI	ACNGT	5 cut(s)	236, 448, 550, 889, 946
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	4 cut(s)	195, 636, 723, 969
BstDSI	CCRYGG	2 cut(s)	370, 621
BstENI	CCTNNNNNAGG	1 cut(s)	1025
BstF5I	GGATG	2 cut(s)	339, 1021
BstKTI	GATC	8 cut(s)	153, 317, 535, 775, 780, 796, 883, 926
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	8 cut(s)	150, 314, 532, 772, 777, 793, 880, 923
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 61, 74, 281, 614
BstNI	CCWGG	1 cut(s)	648
BstNSI	RCATGY	1 cut(s)	1039
BstSCI	CCNGG	1 cut(s)	646
BstSFI	CTRYAG	2 cut(s)	456, 549
BstSLI	GKGCMC	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	284
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	3 cut(s)	314, 777, 793
BstYI	RGATCY	3 cut(s)	314, 777, 793
BsuRI	GGCC	2 cut(s)	260, 333
BtgI	CCRYGG	2 cut(s)	370, 621
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	339, 1021
BtsI	GCAGTG	2 cut(s)	59, 465
BtsIMutI	CAGTG	4 cut(s)	59, 274, 444, 465
BveI	ACCTGC	1 cut(s)	664
Cac8I	GCNNGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	942
CviAII	CATG	6 cut(s)	10, 226, 371, 622, 848, 1036
CviQI	GTAC	1 cut(s)	942
DdeI	CTNAG	4 cut(s)	195, 636, 723, 969
DpnI	GATC	8 cut(s)	152, 316, 534, 774, 779, 795, 882, 925
DpnII	GATC	8 cut(s)	150, 314, 532, 772, 777, 793, 880, 923
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	2 cut(s)	370, 621
Eco47I	GGWCC	1 cut(s)	374
EcoNI	CCTNNNNNAGG	1 cut(s)	1025
EcoRII	CCWGG	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	370, 621
EcoT22I	ATGCAT	1 cut(s)	853
ErhI	CCWWGG	2 cut(s)	370, 621
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	6 cut(s)	13, 229, 374, 625, 851, 1039
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	6 cut(s)	9, 225, 370, 621, 847, 1035
FauNDI	CATATG	1 cut(s)	858
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	2 cut(s)	326, 1028
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	365, 809
GluI	GCNGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	2 cut(s)	260, 333
HapII	CCGG	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	13, 229, 374, 625, 851, 1039
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	8 cut(s)	278, 288, 326, 361, 401, 489, 557, 683
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	2 cut(s)	126, 867
Hpy166II	GTNNAC	4 cut(s)	232, 439, 463, 701
Hpy188I	TCNGA	5 cut(s)	105, 382, 494, 777, 870
Hpy188III	TCNNGA	4 cut(s)	323, 714, 745, 827
Hpy8I	GTNNAC	4 cut(s)	232, 439, 463, 701
HpyAV	CCTTC	4 cut(s)	250, 387, 462, 967
HpyCH4III	ACNGT	5 cut(s)	236, 448, 550, 889, 946
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 61, 74, 281, 614
HpyF3I	CTNAG	4 cut(s)	195, 636, 723, 969
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	13, 229, 374, 625, 851, 1039
Kzo9I	GATC	8 cut(s)	150, 314, 532, 772, 777, 793, 880, 923
LmnI	GCTCC	2 cut(s)	650, 832
Lsp1109I	GCAGC	1 cut(s)	284
MaeI	CTAG	2 cut(s)	365, 809
MaeIII	GTNAC	1 cut(s)	1031
MalI	GATC	8 cut(s)	152, 316, 534, 774, 779, 795, 882, 925
MboI	GATC	8 cut(s)	150, 314, 532, 772, 777, 793, 880, 923
MboII	GAAGA	2 cut(s)	398, 566
MfeI	CAATTG	2 cut(s)	28, 782
MflI	RGATCY	3 cut(s)	314, 777, 793
MhlI	GDGCHC	1 cut(s)	501
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	8 cut(s)	28, 165, 424, 576, 627, 641, 782, 957
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	5 cut(s)	282, 287, 335, 498, 551
MmeI	TCCRAC	2 cut(s)	225, 472
MnlI	CCTC	6 cut(s)	80, 594, 823, 931, 1005, 1021
Mox20I	TGGCCA	1 cut(s)	333
Mph1103I	ATGCAT	1 cut(s)	853
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	648
MunI	CAATTG	2 cut(s)	28, 782
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	648
MwoI	GCNNNNNNNGC	5 cut(s)	52, 61, 74, 281, 614
NcoI	CCATGG	2 cut(s)	370, 621
NdeI	CATATG	1 cut(s)	858
NdeII	GATC	8 cut(s)	150, 314, 532, 772, 777, 793, 880, 923
NlaIII	CATG	6 cut(s)	13, 229, 374, 625, 851, 1039
NlaIV	GGNNCC	2 cut(s)	300, 795
NsiI	ATGCAT	1 cut(s)	853
NspI	RCATGY	1 cut(s)	1039
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	361, 401, 683
PflMI	CCANNNNNTGG	1 cut(s)	751
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	5 cut(s)	282, 286, 334, 497, 551
PpsI	GAGTC	5 cut(s)	282, 286, 334, 497, 551
Psp6I	CCWGG	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	2 cut(s)	300, 795
PspPI	GGNCC	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	460
PsuI	RGATCY	3 cut(s)	314, 777, 793
RsaI	GTAC	1 cut(s)	943
RsaNI	GTAC	1 cut(s)	942
SalI	GTCGAC	1 cut(s)	437
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	8 cut(s)	150, 314, 532, 772, 777, 793, 880, 923
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	5 cut(s)	282, 287, 335, 498, 551
ScrFI	CCNGG	1 cut(s)	648
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	6 cut(s)	480, 603, 655, 678, 810, 978
SfcI	CTRYAG	2 cut(s)	456, 549
SinI	GGWCC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	8 cut(s)	28, 165, 424, 576, 627, 641, 782, 957
SsiI	CCGC	2 cut(s)	275, 997
SspMI	CTAG	2 cut(s)	365, 809
StyD4I	CCNGG	1 cut(s)	646
StyI	CCWWGG	2 cut(s)	370, 621
TaaI	ACNGT	5 cut(s)	236, 448, 550, 889, 946
TaqI	TCGA	2 cut(s)	291, 438
TasI	AATT	8 cut(s)	28, 165, 424, 576, 627, 641, 782, 957
TfiI	GAWTC	3 cut(s)	361, 401, 683
TscAI	CASTG	4 cut(s)	66, 274, 451, 465
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	845, 968
TspRI	CASTG	4 cut(s)	66, 274, 451, 465
Van91I	CCANNNNNTGG	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	1025
XceI	RCATGY	1 cut(s)	1039
XcmI	CCANNNNNNNNNTGG	3 cut(s)	88, 430, 628
XmiI	GTMKAC	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	2 cut(s)	365, 809
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.