Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Forward (+)

209197 .. 212176

Gene Structure 2980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCGTCCATGCTGAATGCCCCACCCAATTGTATCTCTGTTCAGCCACAAAAGCTGCCTGGAACTGCGACCAGTAGAGGATTGGGTGCTACTCGGAGTATCAATCTGAAGCAAAGACTTCCATCACCAGCTGTGAAGAATAAGAAGAAGATGATGATGATGATGATCCCAAAGATGTCAATTTCAGCCCTACCCCTTGACAACCCTACTAAGTCCAACAACAAGTTTGACATTCCTATCATGGTAAACGGTTGTAATGGTAAAATGGGGAAGGCCATTATCAGTGCAGCAGAGTCTGCTGGACTCGATGTGGTTCCCGTCTCCTTTGGATCTGCTCAAGAGTCTGGCCAAACCGTCCAAGTCGGCACAAAGGAGATTCTAGTGCATGGTCCTTCTGAAAGAGAAAGCATACTTGAATCTCTTCTTGTCAAATATCCCAATTTGATTGTGGTCGACTTCACTATCCCTTCTGCAGTAAACGATAATGCAGAGCTATATTGCAGAGTCGGAGTGCCCTTTGTGATGGGAACAACCGGCGGAGATAGGGATCGGTTGTATAAGACTGTAGAAGACTCAAAAGTCTATGCAGTAATTTCCCCTCAAATGGGGAAACAGGTCGTTGCATTTCTTGCAACCATGGAAATTATGGCTGAGCAATTTCCTGGAGCTTTCTCTGGGTATTCCTTGCAGGTGATGGAATCTCATCAAGCAAGTAAACTTGACACATCTGGAACTGCTAAGGCTGTTATTTCTTGCTTCCAGAAGTTGGGAGTGTCTTTTGATATGGATCAGATCCAATTGATAAGGGATCCCCAGCAACAGCTAGAGATGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTATCATCTGACTTCACCTGATCAAACAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAGTTGATGCTGTAATTTTCCTTGCTAAGAAGGTTCATTCAAAGGCAGACAAGTGGATATACGATATGAGGGATGTCCTACGAGAGGGTAACATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

353

Amino Acids

38.46

Weight (kDa)

7.66

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	78 - 202	1.1e-18	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	206 - 346	7e-15	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	679
AasI	GACNNNNNNGTC	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	679
AccB7I	CCANNNNNTGG	1 cut(s)	766
AccI	GTMKAC	1 cut(s)	453
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	7 cut(s)	160, 337, 555, 787, 795, 803, 816
AcoI	YGGCCR	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	958
AfiI	CCNNNNNNNGG	4 cut(s)	604, 605, 766, 1042
AgsI	TTSAA	2 cut(s)	416, 999
AjnI	CCWGG	2 cut(s)	58, 661
AluBI	AGCT	5 cut(s)	55, 131, 493, 668, 823
AluI	AGCT	5 cut(s)	55, 131, 493, 668, 823
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	7 cut(s)	160, 337, 555, 787, 795, 803, 816
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	2 cut(s)	273, 346
ApeKI	GCWGC	2 cut(s)	55, 287
Asp700I	GAANNNNTTC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	117, 703, 882
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	808
BbsI	GAAGAC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	42, 299
BccI	CCATC	4 cut(s)	130, 517, 688, 823
BciT130I	CCWGG	2 cut(s)	60, 663
BclI	TGATCA	1 cut(s)	895
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	380, 824
BfmI	CTRYAG	2 cut(s)	471, 564
BfuAI	ACCTGC	1 cut(s)	679
BisI	GCNGC	2 cut(s)	56, 288
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	2 cut(s)	57, 289
Bme1390I	CCNGG	2 cut(s)	60, 663
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	2 cut(s)	315, 810
BmrFI	CCNGG	2 cut(s)	60, 663
BmsI	GCATC	1 cut(s)	955
BpiI	GAAGAC	1 cut(s)	576
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	1 cut(s)	738
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	321
BsaBI	GATNNNNATC	3 cut(s)	164, 546, 786
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	636
BsaXI	ACNNNNNCTCC	2 cut(s)	839, 869
Bsc4I	CCNNNNNNNGG	4 cut(s)	604, 605, 766, 1042
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	72
Bse8I	GATNNNNATC	3 cut(s)	164, 546, 786
BseBI	CCWGG	2 cut(s)	60, 663
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	1036
BseJI	GATNNNNATC	3 cut(s)	164, 546, 786
BseLI	CCNNNNNNNGG	4 cut(s)	604, 605, 766, 1042
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	860
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	2 cut(s)	42, 299
BseYI	CCCAGC	1 cut(s)	813
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	275, 348
BsiSI	CCGG	1 cut(s)	534
BslI	CCNNNNNNNGG	4 cut(s)	604, 605, 766, 1042
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	275, 348
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	8 cut(s)	165, 329, 547, 787, 792, 808, 895, 938
Bsp1720I	GCTNAGC	1 cut(s)	651
Bsp19I	CCATGG	1 cut(s)	636
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	2 cut(s)	275, 348
BspCNI	CTCAG	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	315, 810
BspMAI	CTGCAG	1 cut(s)	475
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	7 cut(s)	160, 337, 555, 787, 795, 803, 816
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	8 cut(s)	165, 329, 547, 787, 792, 808, 895, 938
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	636
Bst2UI	CCWGG	2 cut(s)	60, 663
Bst4CI	ACNGT	5 cut(s)	251, 355, 565, 904, 961
Bst6I	CTCTTC	1 cut(s)	426
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	296, 629
BstDEI	CTNAG	4 cut(s)	210, 651, 738, 984
BstDSI	CCRYGG	1 cut(s)	636
BstENI	CCTNNNNNAGG	1 cut(s)	1040
BstF5I	GGATG	1 cut(s)	1036
BstKTI	GATC	8 cut(s)	168, 332, 550, 790, 795, 811, 898, 941
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	8 cut(s)	165, 329, 547, 787, 792, 808, 895, 938
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 296, 629
BstNI	CCWGG	2 cut(s)	60, 663
BstNSI	RCATGY	1 cut(s)	1054
BstSCI	CCNGG	2 cut(s)	58, 661
BstSFI	CTRYAG	2 cut(s)	471, 564
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	42, 299
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	3 cut(s)	329, 792, 808
BstYI	RGATCY	3 cut(s)	329, 792, 808
BsuRI	GGCC	2 cut(s)	275, 348
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	1 cut(s)	1036
BtsIMutI	CAGTG	1 cut(s)	289
BveI	ACCTGC	1 cut(s)	679
CaiI	CAGNNNCTG	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	957
CviAII	CATG	6 cut(s)	10, 241, 386, 637, 863, 1051
CviQI	GTAC	1 cut(s)	957
DdeI	CTNAG	4 cut(s)	210, 651, 738, 984
DpnI	GATC	8 cut(s)	167, 331, 549, 789, 794, 810, 897, 940
DpnII	GATC	8 cut(s)	165, 329, 547, 787, 792, 808, 895, 938
DrdI	GACNNNNNNGTC	1 cut(s)	578
DseDI	GACNNNNNNGTC	1 cut(s)	578
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	1040
EcoRII	CCWGG	2 cut(s)	58, 661
EcoT14I	CCWWGG	1 cut(s)	636
EcoT22I	ATGCAT	1 cut(s)	868
ErhI	CCWWGG	1 cut(s)	636
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	6 cut(s)	13, 244, 389, 640, 866, 1054
FatI	CATG	6 cut(s)	9, 240, 385, 636, 862, 1050
FauNDI	CATATG	1 cut(s)	873
FbaI	TGATCA	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	56, 288
FokI	GGATG	1 cut(s)	1043
Fsp4HI	GCNGC	2 cut(s)	56, 288
FspBI	CTAG	2 cut(s)	380, 824
GluI	GCNGC	2 cut(s)	56, 288
GsaI	CCCAGC	1 cut(s)	817
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	275, 348
HapII	CCGG	1 cut(s)	534
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	13, 244, 389, 640, 866, 1054
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	8 cut(s)	293, 303, 341, 376, 416, 504, 572, 698
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	3 cut(s)	117, 703, 882
Hpy166II	GTNNAC	4 cut(s)	247, 454, 478, 716
Hpy188I	TCNGA	6 cut(s)	96, 108, 397, 509, 792, 885
Hpy188III	TCNNGA	4 cut(s)	338, 729, 760, 842
Hpy8I	GTNNAC	4 cut(s)	247, 454, 478, 716
HpyAV	CCTTC	4 cut(s)	265, 402, 477, 982
HpyCH4III	ACNGT	5 cut(s)	251, 355, 565, 904, 961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 296, 629
HpyF3I	CTNAG	4 cut(s)	210, 651, 738, 984
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	13, 244, 389, 640, 866, 1054
Ksp22I	TGATCA	1 cut(s)	895
Kzo9I	GATC	8 cut(s)	165, 329, 547, 787, 792, 808, 895, 938
LmnI	GCTCC	2 cut(s)	665, 847
Lsp1109I	GCAGC	2 cut(s)	42, 299
LweI	GCATC	1 cut(s)	955
MaeI	CTAG	2 cut(s)	380, 824
MaeIII	GTNAC	1 cut(s)	1046
MalI	GATC	8 cut(s)	167, 331, 549, 789, 794, 810, 897, 940
MboI	GATC	8 cut(s)	165, 329, 547, 787, 792, 808, 895, 938
MboII	GAAGA	5 cut(s)	148, 157, 160, 413, 581
MfeI	CAATTG	2 cut(s)	28, 797
MflI	RGATCY	3 cut(s)	329, 792, 808
MhlI	GDGCHC	1 cut(s)	516
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	8 cut(s)	28, 180, 439, 591, 642, 656, 797, 972
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	5 cut(s)	297, 302, 350, 513, 566
MmeI	TCCRAC	2 cut(s)	240, 487
MnlI	CCTC	6 cut(s)	71, 609, 838, 946, 1020, 1036
Mox20I	TGGCCA	1 cut(s)	348
Mph1103I	ATGCAT	1 cut(s)	868
MroXI	GAANNNNTTC	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	2 cut(s)	60, 663
MunI	CAATTG	2 cut(s)	28, 797
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	60, 663
MwoI	GCNNNNNNNGC	3 cut(s)	52, 296, 629
NcoI	CCATGG	1 cut(s)	636
NdeI	CATATG	1 cut(s)	873
NdeII	GATC	8 cut(s)	165, 329, 547, 787, 792, 808, 895, 938
NlaIII	CATG	6 cut(s)	13, 244, 389, 640, 866, 1054
NlaIV	GGNNCC	2 cut(s)	315, 810
NsiI	ATGCAT	1 cut(s)	868
NspI	RCATGY	1 cut(s)	1054
PaqCI	CACCTGC	1 cut(s)	679
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	376, 416, 698
PflMI	CCANNNNNTGG	1 cut(s)	766
PfoI	TCCNGGA	1 cut(s)	661
PkrI	GCNGC	2 cut(s)	57, 289
PleI	GAGTC	5 cut(s)	297, 301, 349, 512, 566
PpsI	GAGTC	5 cut(s)	297, 301, 349, 512, 566
Psp6I	CCWGG	2 cut(s)	58, 661
PspFI	CCCAGC	1 cut(s)	813
PspGI	CCWGG	2 cut(s)	58, 661
PspN4I	GGNNCC	2 cut(s)	315, 810
PspPI	GGNCC	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	3 cut(s)	329, 792, 808
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	958
RsaNI	GTAC	1 cut(s)	957
SalI	GTCGAC	1 cut(s)	452
SatI	GCNGC	2 cut(s)	56, 288
Sau3AI	GATC	8 cut(s)	165, 329, 547, 787, 792, 808, 895, 938
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	5 cut(s)	297, 302, 350, 513, 566
ScrFI	CCNGG	2 cut(s)	60, 663
SduI	GDGCHC	1 cut(s)	516
SetI	ASST	9 cut(s)	57, 133, 495, 618, 670, 693, 825, 895, 993
SfaNI	GCATC	1 cut(s)	955
SfcI	CTRYAG	2 cut(s)	471, 564
SinI	GGWCC	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	8 cut(s)	28, 180, 439, 591, 642, 656, 797, 972
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	2 cut(s)	380, 824
StyD4I	CCNGG	2 cut(s)	58, 661
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	5 cut(s)	251, 355, 565, 904, 961
TaqI	TCGA	2 cut(s)	306, 453
TasI	AATT	8 cut(s)	28, 180, 439, 591, 642, 656, 797, 972
TfiI	GAWTC	3 cut(s)	376, 416, 698
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	2 cut(s)	55, 287
TspDTI	ATGAA	2 cut(s)	860, 983
TspRI	CASTG	1 cut(s)	289
Van91I	CCANNNNNTGG	1 cut(s)	766
VpaK11BI	GGWCC	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	1040
XceI	RCATGY	1 cut(s)	1054
XcmI	CCANNNNNNNNNTGG	3 cut(s)	79, 445, 643
XmiI	GTMKAC	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	2 cut(s)	380, 824
Zsp2I	ATGCAT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.